Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3800 and Pf1N1B4_5229 are separated by 308 nucleotides Pf1N1B4_5229 and Pf1N1B4_3801 are separated by 321 nucleotides Pf1N1B4_3801 and Pf1N1B4_3802 are separated by 68 nucleotides Pf1N1B4_3802 and Pf1N1B4_3803 are separated by 734 nucleotides
Pf1N1B4_3800 - Enoyl-CoA hydratase/isomerase family protein, at 4,209,183 to 4,209,872
_3800
Pf1N1B4_5229 - tRNA-Ser-GGA, at 4,210,181 to 4,210,267
_5229
Pf1N1B4_3801 - hypothetical protein, at 4,210,589 to 4,210,786
_3801
Pf1N1B4_3802 - PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene, at 4,210,855 to 4,211,175
_3802
Pf1N1B4_3803 - hypothetical protein, at 4,211,910 to 4,212,221
_3803
Position (kb)
4210
4211
4212 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4209.888 kb on - strand at 4209.888 kb on - strand at 4209.890 kb on + strand at 4209.891 kb on - strand at 4209.891 kb on - strand at 4209.928 kb on + strand at 4209.928 kb on + strand at 4210.010 kb on + strand at 4210.010 kb on + strand at 4210.010 kb on + strand at 4210.011 kb on - strand at 4210.011 kb on - strand at 4210.011 kb on - strand at 4210.011 kb on - strand at 4210.011 kb on - strand at 4210.011 kb on - strand at 4210.013 kb on - strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.370 kb on + strand at 4210.370 kb on + strand at 4210.370 kb on + strand at 4210.370 kb on + strand at 4210.371 kb on - strand at 4210.371 kb on - strand at 4210.371 kb on - strand at 4210.371 kb on - strand at 4210.371 kb on - strand at 4210.399 kb on + strand at 4210.399 kb on + strand at 4210.399 kb on + strand at 4210.399 kb on + strand at 4210.399 kb on + strand at 4210.399 kb on + strand at 4210.400 kb on - strand at 4210.400 kb on - strand at 4210.426 kb on + strand at 4210.426 kb on + strand at 4210.426 kb on + strand at 4210.427 kb on - strand at 4210.427 kb on - strand at 4210.499 kb on + strand at 4210.499 kb on + strand at 4210.500 kb on - strand at 4210.588 kb on + strand at 4210.729 kb on + strand, within Pf1N1B4_3801 at 4210.730 kb on - strand, within Pf1N1B4_3801 at 4210.744 kb on + strand, within Pf1N1B4_3801 at 4210.745 kb on - strand, within Pf1N1B4_3801 at 4210.784 kb on + strand at 4210.785 kb on - strand at 4210.838 kb on - strand at 4210.903 kb on + strand, within Pf1N1B4_3802 at 4210.904 kb on - strand, within Pf1N1B4_3802 at 4210.904 kb on - strand at 4210.958 kb on + strand, within Pf1N1B4_3802 at 4210.958 kb on + strand, within Pf1N1B4_3802 at 4210.958 kb on + strand at 4210.959 kb on - strand, within Pf1N1B4_3802 at 4211.098 kb on + strand, within Pf1N1B4_3802 at 4211.173 kb on + strand at 4211.173 kb on + strand at 4211.173 kb on + strand at 4211.174 kb on - strand at 4211.205 kb on + strand at 4211.205 kb on + strand at 4211.205 kb on + strand at 4211.205 kb on + strand at 4211.280 kb on + strand at 4211.280 kb on + strand at 4211.281 kb on - strand at 4211.321 kb on + strand at 4211.335 kb on - strand at 4211.369 kb on + strand at 4211.397 kb on + strand at 4211.397 kb on + strand at 4211.397 kb on + strand at 4211.397 kb on + strand at 4211.398 kb on - strand at 4211.423 kb on + strand at 4211.447 kb on + strand at 4211.447 kb on + strand at 4211.448 kb on - strand at 4211.514 kb on + strand at 4211.514 kb on + strand at 4211.514 kb on + strand at 4211.514 kb on + strand at 4211.607 kb on + strand at 4211.608 kb on - strand at 4211.648 kb on + strand at 4211.648 kb on + strand at 4211.649 kb on - strand at 4211.649 kb on - strand at 4211.649 kb on - strand at 4211.652 kb on + strand at 4211.652 kb on + strand at 4211.653 kb on - strand at 4211.653 kb on - strand at 4211.653 kb on - strand at 4211.670 kb on + strand at 4211.722 kb on + strand at 4211.722 kb on + strand at 4211.734 kb on + strand at 4211.736 kb on + strand at 4211.737 kb on - strand at 4211.802 kb on + strand at 4211.802 kb on + strand at 4211.802 kb on + strand at 4211.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 4,209,888 - +0.9 4,209,888 - +0.3 4,209,890 + +0.1 4,209,891 - -1.4 4,209,891 - +0.6 4,209,928 + +1.9 4,209,928 + -1.1 4,210,010 + -1.1 4,210,010 + -0.3 4,210,010 + -0.4 4,210,011 - -0.1 4,210,011 - +0.5 4,210,011 - -1.7 4,210,011 - -0.1 4,210,011 - -1.7 4,210,011 - +0.9 4,210,013 - +0.2 4,210,014 + -1.2 4,210,014 + -1.9 4,210,014 + +0.6 4,210,014 + -1.9 4,210,014 + -0.7 4,210,014 + -2.1 4,210,014 + +0.7 4,210,015 - -0.9 4,210,015 - +0.1 4,210,015 - -0.3 4,210,015 - -0.7 4,210,015 - -0.7 4,210,015 - -0.7 4,210,015 - -0.7 4,210,015 - +0.6 4,210,015 - -0.7 4,210,015 - -0.2 4,210,370 + -0.1 4,210,370 + -0.1 4,210,370 + +0.4 4,210,370 + +0.5 4,210,371 - +0.9 4,210,371 - -0.1 4,210,371 - -0.7 4,210,371 - -0.1 4,210,371 - +1.3 4,210,399 + -1.4 4,210,399 + +1.3 4,210,399 + -0.9 4,210,399 + -0.6 4,210,399 + +1.3 4,210,399 + -0.1 4,210,400 - +0.9 4,210,400 - +0.3 4,210,426 + -0.1 4,210,426 + +0.1 4,210,426 + +2.5 4,210,427 - +0.5 4,210,427 - +2.7 4,210,499 + +0.9 4,210,499 + -1.1 4,210,500 - -1.7 4,210,588 + +0.3 4,210,729 + Pf1N1B4_3801 0.71 +1.5 4,210,730 - Pf1N1B4_3801 0.71 -2.7 4,210,744 + Pf1N1B4_3801 0.78 +2.2 4,210,745 - Pf1N1B4_3801 0.79 +0.2 4,210,784 + -0.1 4,210,785 - +0.5 4,210,838 - +1.5 4,210,903 + Pf1N1B4_3802 0.15 -0.7 4,210,904 - Pf1N1B4_3802 0.15 -1.7 4,210,904 - +0.5 4,210,958 + Pf1N1B4_3802 0.32 +1.2 4,210,958 + Pf1N1B4_3802 0.32 -1.2 4,210,958 + +1.2 4,210,959 - Pf1N1B4_3802 0.32 -1.1 4,211,098 + Pf1N1B4_3802 0.76 -2.4 4,211,173 + -0.7 4,211,173 + +0.2 4,211,173 + -0.4 4,211,174 - +0.3 4,211,205 + -2.7 4,211,205 + -0.4 4,211,205 + -0.8 4,211,205 + -0.5 4,211,280 + +0.3 4,211,280 + +1.3 4,211,281 - -2.8 4,211,321 + -0.1 4,211,335 - +1.3 4,211,369 + +0.9 4,211,397 + +0.5 4,211,397 + +1.9 4,211,397 + +1.3 4,211,397 + +1.3 4,211,398 - +0.3 4,211,423 + +0.9 4,211,447 + -0.1 4,211,447 + -1.2 4,211,448 - -1.1 4,211,514 + +1.7 4,211,514 + +2.3 4,211,514 + +0.1 4,211,514 + +0.5 4,211,607 + +0.3 4,211,608 - +0.4 4,211,648 + +2.7 4,211,648 + +1.3 4,211,649 - -0.9 4,211,649 - -0.3 4,211,649 - +0.7 4,211,652 + +0.5 4,211,652 + +1.3 4,211,653 - +0.5 4,211,653 - -1.7 4,211,653 - +0.5 4,211,670 + -0.4 4,211,722 + -0.8 4,211,722 + -0.1 4,211,734 + -2.2 4,211,736 + +1.1 4,211,737 - -0.6 4,211,802 + +0.9 4,211,802 + -0.1 4,211,802 + -2.2 4,211,927 + -0.7
Or see this region's nucleotide sequence