Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3802

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3800 and Pf1N1B4_5229 are separated by 308 nucleotidesPf1N1B4_5229 and Pf1N1B4_3801 are separated by 321 nucleotidesPf1N1B4_3801 and Pf1N1B4_3802 are separated by 68 nucleotidesPf1N1B4_3802 and Pf1N1B4_3803 are separated by 734 nucleotides Pf1N1B4_3800 - Enoyl-CoA hydratase/isomerase family protein, at 4,209,183 to 4,209,872 _3800 Pf1N1B4_5229 - tRNA-Ser-GGA, at 4,210,181 to 4,210,267 _5229 Pf1N1B4_3801 - hypothetical protein, at 4,210,589 to 4,210,786 _3801 Pf1N1B4_3802 - PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene, at 4,210,855 to 4,211,175 _3802 Pf1N1B4_3803 - hypothetical protein, at 4,211,910 to 4,212,221 _3803 Position (kb) 4210 4211 4212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4209.888 kb on - strandat 4209.888 kb on - strandat 4209.890 kb on + strandat 4209.891 kb on - strandat 4209.891 kb on - strandat 4209.928 kb on + strandat 4209.928 kb on + strandat 4210.010 kb on + strandat 4210.010 kb on + strandat 4210.010 kb on + strandat 4210.011 kb on - strandat 4210.011 kb on - strandat 4210.011 kb on - strandat 4210.011 kb on - strandat 4210.011 kb on - strandat 4210.011 kb on - strandat 4210.013 kb on - strandat 4210.014 kb on + strandat 4210.014 kb on + strandat 4210.014 kb on + strandat 4210.014 kb on + strandat 4210.014 kb on + strandat 4210.014 kb on + strandat 4210.014 kb on + strandat 4210.015 kb on - strandat 4210.015 kb on - strandat 4210.015 kb on - strandat 4210.015 kb on - strandat 4210.015 kb on - strandat 4210.015 kb on - strandat 4210.015 kb on - strandat 4210.015 kb on - strandat 4210.015 kb on - strandat 4210.015 kb on - strandat 4210.370 kb on + strandat 4210.370 kb on + strandat 4210.370 kb on + strandat 4210.370 kb on + strandat 4210.371 kb on - strandat 4210.371 kb on - strandat 4210.371 kb on - strandat 4210.371 kb on - strandat 4210.371 kb on - strandat 4210.399 kb on + strandat 4210.399 kb on + strandat 4210.399 kb on + strandat 4210.399 kb on + strandat 4210.399 kb on + strandat 4210.399 kb on + strandat 4210.400 kb on - strandat 4210.400 kb on - strandat 4210.426 kb on + strandat 4210.426 kb on + strandat 4210.426 kb on + strandat 4210.427 kb on - strandat 4210.427 kb on - strandat 4210.499 kb on + strandat 4210.499 kb on + strandat 4210.500 kb on - strandat 4210.588 kb on + strandat 4210.729 kb on + strand, within Pf1N1B4_3801at 4210.730 kb on - strand, within Pf1N1B4_3801at 4210.744 kb on + strand, within Pf1N1B4_3801at 4210.745 kb on - strand, within Pf1N1B4_3801at 4210.784 kb on + strandat 4210.785 kb on - strandat 4210.838 kb on - strandat 4210.903 kb on + strand, within Pf1N1B4_3802at 4210.904 kb on - strand, within Pf1N1B4_3802at 4210.904 kb on - strandat 4210.958 kb on + strand, within Pf1N1B4_3802at 4210.958 kb on + strand, within Pf1N1B4_3802at 4210.958 kb on + strandat 4210.959 kb on - strand, within Pf1N1B4_3802at 4211.098 kb on + strand, within Pf1N1B4_3802at 4211.173 kb on + strandat 4211.173 kb on + strandat 4211.173 kb on + strandat 4211.174 kb on - strandat 4211.205 kb on + strandat 4211.205 kb on + strandat 4211.205 kb on + strandat 4211.205 kb on + strandat 4211.280 kb on + strandat 4211.280 kb on + strandat 4211.281 kb on - strandat 4211.321 kb on + strandat 4211.335 kb on - strandat 4211.369 kb on + strandat 4211.397 kb on + strandat 4211.397 kb on + strandat 4211.397 kb on + strandat 4211.397 kb on + strandat 4211.398 kb on - strandat 4211.423 kb on + strandat 4211.447 kb on + strandat 4211.447 kb on + strandat 4211.448 kb on - strandat 4211.514 kb on + strandat 4211.514 kb on + strandat 4211.514 kb on + strandat 4211.514 kb on + strandat 4211.607 kb on + strandat 4211.608 kb on - strandat 4211.648 kb on + strandat 4211.648 kb on + strandat 4211.649 kb on - strandat 4211.649 kb on - strandat 4211.649 kb on - strandat 4211.652 kb on + strandat 4211.652 kb on + strandat 4211.653 kb on - strandat 4211.653 kb on - strandat 4211.653 kb on - strandat 4211.670 kb on + strandat 4211.722 kb on + strandat 4211.722 kb on + strandat 4211.734 kb on + strandat 4211.736 kb on + strandat 4211.737 kb on - strandat 4211.802 kb on + strandat 4211.802 kb on + strandat 4211.802 kb on + strandat 4211.927 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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4,209,888 - +0.9
4,209,888 - +0.3
4,209,890 + +0.1
4,209,891 - -1.4
4,209,891 - +0.6
4,209,928 + +1.9
4,209,928 + -1.1
4,210,010 + -1.1
4,210,010 + -0.3
4,210,010 + -0.4
4,210,011 - -0.1
4,210,011 - +0.5
4,210,011 - -1.7
4,210,011 - -0.1
4,210,011 - -1.7
4,210,011 - +0.9
4,210,013 - +0.2
4,210,014 + -1.2
4,210,014 + -1.9
4,210,014 + +0.6
4,210,014 + -1.9
4,210,014 + -0.7
4,210,014 + -2.1
4,210,014 + +0.7
4,210,015 - -0.9
4,210,015 - +0.1
4,210,015 - -0.3
4,210,015 - -0.7
4,210,015 - -0.7
4,210,015 - -0.7
4,210,015 - -0.7
4,210,015 - +0.6
4,210,015 - -0.7
4,210,015 - -0.2
4,210,370 + -0.1
4,210,370 + -0.1
4,210,370 + +0.4
4,210,370 + +0.5
4,210,371 - +0.9
4,210,371 - -0.1
4,210,371 - -0.7
4,210,371 - -0.1
4,210,371 - +1.3
4,210,399 + -1.4
4,210,399 + +1.3
4,210,399 + -0.9
4,210,399 + -0.6
4,210,399 + +1.3
4,210,399 + -0.1
4,210,400 - +0.9
4,210,400 - +0.3
4,210,426 + -0.1
4,210,426 + +0.1
4,210,426 + +2.5
4,210,427 - +0.5
4,210,427 - +2.7
4,210,499 + +0.9
4,210,499 + -1.1
4,210,500 - -1.7
4,210,588 + +0.3
4,210,729 + Pf1N1B4_3801 0.71 +1.5
4,210,730 - Pf1N1B4_3801 0.71 -2.7
4,210,744 + Pf1N1B4_3801 0.78 +2.2
4,210,745 - Pf1N1B4_3801 0.79 +0.2
4,210,784 + -0.1
4,210,785 - +0.5
4,210,838 - +1.5
4,210,903 + Pf1N1B4_3802 0.15 -0.7
4,210,904 - Pf1N1B4_3802 0.15 -1.7
4,210,904 - +0.5
4,210,958 + Pf1N1B4_3802 0.32 +1.2
4,210,958 + Pf1N1B4_3802 0.32 -1.2
4,210,958 + +1.2
4,210,959 - Pf1N1B4_3802 0.32 -1.1
4,211,098 + Pf1N1B4_3802 0.76 -2.4
4,211,173 + -0.7
4,211,173 + +0.2
4,211,173 + -0.4
4,211,174 - +0.3
4,211,205 + -2.7
4,211,205 + -0.4
4,211,205 + -0.8
4,211,205 + -0.5
4,211,280 + +0.3
4,211,280 + +1.3
4,211,281 - -2.8
4,211,321 + -0.1
4,211,335 - +1.3
4,211,369 + +0.9
4,211,397 + +0.5
4,211,397 + +1.9
4,211,397 + +1.3
4,211,397 + +1.3
4,211,398 - +0.3
4,211,423 + +0.9
4,211,447 + -0.1
4,211,447 + -1.2
4,211,448 - -1.1
4,211,514 + +1.7
4,211,514 + +2.3
4,211,514 + +0.1
4,211,514 + +0.5
4,211,607 + +0.3
4,211,608 - +0.4
4,211,648 + +2.7
4,211,648 + +1.3
4,211,649 - -0.9
4,211,649 - -0.3
4,211,649 - +0.7
4,211,652 + +0.5
4,211,652 + +1.3
4,211,653 - +0.5
4,211,653 - -1.7
4,211,653 - +0.5
4,211,670 + -0.4
4,211,722 + -0.8
4,211,722 + -0.1
4,211,734 + -2.2
4,211,736 + +1.1
4,211,737 - -0.6
4,211,802 + +0.9
4,211,802 + -0.1
4,211,802 + -2.2
4,211,927 + -0.7

Or see this region's nucleotide sequence