Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2755 and Pf1N1B4_2756 are separated by 227 nucleotides Pf1N1B4_2756 and Pf1N1B4_2757 are separated by 67 nucleotides Pf1N1B4_2757 and Pf1N1B4_2758 are separated by 6 nucleotides Pf1N1B4_2758 and Pf1N1B4_2759 are separated by 79 nucleotides
Pf1N1B4_2755 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 3,093,711 to 3,095,006
_2755
Pf1N1B4_2756 - FIG00960037: hypothetical protein, at 3,095,234 to 3,095,689
_2756
Pf1N1B4_2757 - DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31, at 3,095,757 to 3,096,308
_2757
Pf1N1B4_2758 - HigA protein (antitoxin to HigB), at 3,096,315 to 3,096,602
_2758
Pf1N1B4_2759 - MFS general substrate transporter, at 3,096,682 to 3,097,920
_2759
Position (kb)
3095
3096
3097 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3094.915 kb on + strand at 3094.915 kb on + strand at 3094.915 kb on + strand at 3094.915 kb on + strand at 3094.915 kb on + strand at 3094.916 kb on - strand at 3094.916 kb on - strand at 3094.916 kb on - strand at 3094.916 kb on - strand at 3094.916 kb on - strand at 3094.916 kb on - strand at 3094.916 kb on - strand at 3094.916 kb on - strand at 3095.042 kb on + strand at 3095.120 kb on + strand at 3095.120 kb on + strand at 3095.120 kb on + strand at 3095.147 kb on + strand at 3095.148 kb on - strand at 3095.148 kb on - strand at 3095.148 kb on - strand at 3095.177 kb on + strand at 3095.178 kb on - strand at 3095.178 kb on - strand at 3095.230 kb on - strand at 3095.230 kb on - strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.234 kb on - strand at 3095.234 kb on - strand at 3095.234 kb on - strand at 3095.234 kb on - strand at 3095.234 kb on - strand at 3095.234 kb on - strand at 3095.234 kb on - strand at 3095.234 kb on - strand at 3095.234 kb on - strand at 3095.234 kb on - strand at 3095.237 kb on + strand at 3095.237 kb on + strand at 3095.237 kb on + strand at 3095.237 kb on + strand at 3095.237 kb on + strand at 3095.237 kb on + strand at 3095.237 kb on + strand at 3095.237 kb on + strand at 3095.237 kb on + strand at 3095.238 kb on - strand at 3095.238 kb on - strand at 3095.238 kb on - strand at 3095.238 kb on - strand at 3095.245 kb on + strand at 3095.248 kb on + strand at 3095.249 kb on - strand at 3095.383 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.441 kb on + strand, within Pf1N1B4_2756 at 3095.442 kb on - strand, within Pf1N1B4_2756 at 3095.442 kb on - strand at 3095.442 kb on - strand, within Pf1N1B4_2756 at 3095.442 kb on - strand at 3095.442 kb on - strand, within Pf1N1B4_2756 at 3095.442 kb on - strand, within Pf1N1B4_2756 at 3095.442 kb on - strand, within Pf1N1B4_2756 at 3095.442 kb on - strand, within Pf1N1B4_2756 at 3095.442 kb on - strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.585 kb on + strand, within Pf1N1B4_2756 at 3095.586 kb on - strand, within Pf1N1B4_2756 at 3095.586 kb on - strand, within Pf1N1B4_2756 at 3095.586 kb on - strand, within Pf1N1B4_2756 at 3095.586 kb on - strand, within Pf1N1B4_2756 at 3095.635 kb on + strand, within Pf1N1B4_2756 at 3095.635 kb on + strand at 3095.636 kb on - strand, within Pf1N1B4_2756 at 3095.636 kb on - strand, within Pf1N1B4_2756 at 3095.678 kb on + strand at 3095.678 kb on + strand at 3095.678 kb on + strand at 3095.678 kb on + strand at 3095.679 kb on - strand at 3095.679 kb on - strand at 3095.679 kb on - strand at 3095.679 kb on - strand at 3095.679 kb on - strand at 3095.679 kb on - strand at 3095.725 kb on - strand at 3095.765 kb on + strand at 3095.879 kb on + strand, within Pf1N1B4_2757 at 3095.879 kb on + strand, within Pf1N1B4_2757 at 3095.879 kb on + strand, within Pf1N1B4_2757 at 3095.879 kb on + strand, within Pf1N1B4_2757 at 3095.879 kb on + strand, within Pf1N1B4_2757 at 3095.880 kb on - strand, within Pf1N1B4_2757 at 3095.880 kb on - strand, within Pf1N1B4_2757 at 3095.880 kb on - strand, within Pf1N1B4_2757 at 3095.880 kb on - strand, within Pf1N1B4_2757 at 3095.936 kb on - strand, within Pf1N1B4_2757 at 3096.379 kb on + strand, within Pf1N1B4_2758 at 3096.379 kb on + strand, within Pf1N1B4_2758 at 3096.380 kb on - strand, within Pf1N1B4_2758 at 3096.380 kb on - strand, within Pf1N1B4_2758 at 3096.438 kb on + strand, within Pf1N1B4_2758 at 3096.439 kb on - strand, within Pf1N1B4_2758 at 3096.552 kb on + strand, within Pf1N1B4_2758 at 3096.552 kb on + strand, within Pf1N1B4_2758 at 3096.552 kb on + strand, within Pf1N1B4_2758 at 3096.552 kb on + strand, within Pf1N1B4_2758 at 3096.552 kb on + strand, within Pf1N1B4_2758 at 3096.552 kb on + strand, within Pf1N1B4_2758 at 3096.552 kb on + strand, within Pf1N1B4_2758 at 3096.552 kb on + strand, within Pf1N1B4_2758 at 3096.552 kb on + strand, within Pf1N1B4_2758 at 3096.553 kb on - strand, within Pf1N1B4_2758 at 3096.553 kb on - strand, within Pf1N1B4_2758 at 3096.553 kb on - strand, within Pf1N1B4_2758 at 3096.553 kb on - strand, within Pf1N1B4_2758 at 3096.553 kb on - strand, within Pf1N1B4_2758 at 3096.553 kb on - strand, within Pf1N1B4_2758 at 3096.625 kb on + strand at 3096.678 kb on + strand at 3096.678 kb on + strand at 3096.679 kb on - strand at 3096.679 kb on - strand at 3096.973 kb on + strand, within Pf1N1B4_2759 at 3097.042 kb on + strand, within Pf1N1B4_2759 at 3097.043 kb on - strand, within Pf1N1B4_2759 at 3097.043 kb on - strand, within Pf1N1B4_2759 at 3097.179 kb on + strand, within Pf1N1B4_2759 at 3097.180 kb on - strand, within Pf1N1B4_2759 at 3097.180 kb on - strand, within Pf1N1B4_2759 at 3097.180 kb on - strand, within Pf1N1B4_2759 at 3097.180 kb on - strand, within Pf1N1B4_2759
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 3,094,915 + -1.3 3,094,915 + +0.1 3,094,915 + -0.7 3,094,915 + +0.5 3,094,915 + +1.3 3,094,916 - -0.5 3,094,916 - -0.0 3,094,916 - +2.0 3,094,916 - +1.9 3,094,916 - -0.6 3,094,916 - -1.3 3,094,916 - -0.0 3,094,916 - -0.9 3,095,042 + +1.7 3,095,120 + -1.3 3,095,120 + -1.7 3,095,120 + +0.1 3,095,147 + -1.9 3,095,148 - -0.8 3,095,148 - +1.3 3,095,148 - +2.0 3,095,177 + -0.9 3,095,178 - +1.7 3,095,178 - -0.3 3,095,230 - +1.5 3,095,230 - +0.4 3,095,233 + +1.0 3,095,233 + +1.9 3,095,233 + +0.9 3,095,233 + +1.5 3,095,233 + +1.7 3,095,233 + +0.4 3,095,233 + -0.3 3,095,233 + -0.6 3,095,233 + -1.9 3,095,233 + +0.1 3,095,233 + -0.7 3,095,233 + -1.0 3,095,233 + +1.3 3,095,233 + -0.1 3,095,233 + +1.3 3,095,233 + +1.5 3,095,233 + +0.1 3,095,234 - -2.2 3,095,234 - +0.8 3,095,234 - -0.7 3,095,234 - +1.6 3,095,234 - -0.2 3,095,234 - +1.0 3,095,234 - -0.3 3,095,234 - -1.2 3,095,234 - -0.7 3,095,234 - +1.1 3,095,237 + -1.3 3,095,237 + +2.3 3,095,237 + -2.2 3,095,237 + -0.3 3,095,237 + -0.6 3,095,237 + -0.7 3,095,237 + +0.3 3,095,237 + +0.3 3,095,237 + -0.2 3,095,238 - +0.4 3,095,238 - -0.3 3,095,238 - -0.0 3,095,238 - +0.7 3,095,245 + -0.0 3,095,248 + -0.7 3,095,249 - -0.7 3,095,383 + Pf1N1B4_2756 0.33 -0.7 3,095,441 + Pf1N1B4_2756 0.45 -0.4 3,095,441 + Pf1N1B4_2756 0.45 +0.5 3,095,441 + Pf1N1B4_2756 0.45 +0.5 3,095,441 + Pf1N1B4_2756 0.45 -0.3 3,095,441 + Pf1N1B4_2756 0.45 +1.9 3,095,441 + Pf1N1B4_2756 0.45 -0.7 3,095,441 + Pf1N1B4_2756 0.45 -1.0 3,095,441 + Pf1N1B4_2756 0.45 +1.9 3,095,441 + Pf1N1B4_2756 0.45 +0.4 3,095,441 + Pf1N1B4_2756 0.45 -0.8 3,095,441 + Pf1N1B4_2756 0.45 -0.1 3,095,441 + Pf1N1B4_2756 0.45 +1.3 3,095,441 + Pf1N1B4_2756 0.45 +1.3 3,095,442 - Pf1N1B4_2756 0.46 +0.7 3,095,442 - +0.3 3,095,442 - Pf1N1B4_2756 0.46 -2.0 3,095,442 - +2.3 3,095,442 - Pf1N1B4_2756 0.46 +0.3 3,095,442 - Pf1N1B4_2756 0.46 +0.3 3,095,442 - Pf1N1B4_2756 0.46 -1.0 3,095,442 - Pf1N1B4_2756 0.46 -0.2 3,095,442 - Pf1N1B4_2756 0.46 +0.3 3,095,585 + Pf1N1B4_2756 0.77 -0.0 3,095,585 + Pf1N1B4_2756 0.77 -0.7 3,095,585 + Pf1N1B4_2756 0.77 -0.7 3,095,585 + Pf1N1B4_2756 0.77 -1.3 3,095,585 + Pf1N1B4_2756 0.77 -0.7 3,095,585 + Pf1N1B4_2756 0.77 +0.6 3,095,585 + Pf1N1B4_2756 0.77 +0.2 3,095,585 + Pf1N1B4_2756 0.77 +0.5 3,095,585 + Pf1N1B4_2756 0.77 -1.5 3,095,585 + Pf1N1B4_2756 0.77 -0.3 3,095,585 + Pf1N1B4_2756 0.77 -1.3 3,095,585 + Pf1N1B4_2756 0.77 +1.6 3,095,585 + Pf1N1B4_2756 0.77 -0.4 3,095,585 + Pf1N1B4_2756 0.77 -0.9 3,095,585 + Pf1N1B4_2756 0.77 +1.1 3,095,586 - Pf1N1B4_2756 0.77 +1.3 3,095,586 - Pf1N1B4_2756 0.77 -0.0 3,095,586 - Pf1N1B4_2756 0.77 +0.3 3,095,586 - Pf1N1B4_2756 0.77 -0.1 3,095,635 + Pf1N1B4_2756 0.88 -0.9 3,095,635 + +0.3 3,095,636 - Pf1N1B4_2756 0.88 -0.3 3,095,636 - Pf1N1B4_2756 0.88 -1.3 3,095,678 + +0.3 3,095,678 + -1.7 3,095,678 + -1.2 3,095,678 + +0.6 3,095,679 - +0.4 3,095,679 - +0.4 3,095,679 - -0.3 3,095,679 - -0.7 3,095,679 - +0.9 3,095,679 - -1.0 3,095,725 - -0.7 3,095,765 + +1.3 3,095,879 + Pf1N1B4_2757 0.22 -1.5 3,095,879 + Pf1N1B4_2757 0.22 -1.3 3,095,879 + Pf1N1B4_2757 0.22 -0.4 3,095,879 + Pf1N1B4_2757 0.22 -1.0 3,095,879 + Pf1N1B4_2757 0.22 -1.0 3,095,880 - Pf1N1B4_2757 0.22 -0.2 3,095,880 - Pf1N1B4_2757 0.22 -0.2 3,095,880 - Pf1N1B4_2757 0.22 -0.7 3,095,880 - Pf1N1B4_2757 0.22 -0.5 3,095,936 - Pf1N1B4_2757 0.32 -1.5 3,096,379 + Pf1N1B4_2758 0.22 +0.7 3,096,379 + Pf1N1B4_2758 0.22 +0.0 3,096,380 - Pf1N1B4_2758 0.23 +3.9 3,096,380 - Pf1N1B4_2758 0.23 +1.0 3,096,438 + Pf1N1B4_2758 0.43 -2.2 3,096,439 - Pf1N1B4_2758 0.43 +0.4 3,096,552 + Pf1N1B4_2758 0.82 +2.5 3,096,552 + Pf1N1B4_2758 0.82 -0.0 3,096,552 + Pf1N1B4_2758 0.82 -2.2 3,096,552 + Pf1N1B4_2758 0.82 -0.3 3,096,552 + Pf1N1B4_2758 0.82 -0.2 3,096,552 + Pf1N1B4_2758 0.82 -1.0 3,096,552 + Pf1N1B4_2758 0.82 -1.2 3,096,552 + Pf1N1B4_2758 0.82 -0.9 3,096,552 + Pf1N1B4_2758 0.82 +0.3 3,096,553 - Pf1N1B4_2758 0.83 +0.7 3,096,553 - Pf1N1B4_2758 0.83 +1.3 3,096,553 - Pf1N1B4_2758 0.83 -0.3 3,096,553 - Pf1N1B4_2758 0.83 -1.4 3,096,553 - Pf1N1B4_2758 0.83 +0.3 3,096,553 - Pf1N1B4_2758 0.83 -1.0 3,096,625 + -0.7 3,096,678 + +2.6 3,096,678 + +0.8 3,096,679 - -1.3 3,096,679 - -0.3 3,096,973 + Pf1N1B4_2759 0.23 +0.3 3,097,042 + Pf1N1B4_2759 0.29 -1.3 3,097,043 - Pf1N1B4_2759 0.29 +1.1 3,097,043 - Pf1N1B4_2759 0.29 -0.0 3,097,179 + Pf1N1B4_2759 0.40 +0.1 3,097,180 - Pf1N1B4_2759 0.40 -0.2 3,097,180 - Pf1N1B4_2759 0.40 +0.1 3,097,180 - Pf1N1B4_2759 0.40 +0.7 3,097,180 - Pf1N1B4_2759 0.40 +1.3
Or see this region's nucleotide sequence