Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2453

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2451 and Pf1N1B4_2452 are separated by 131 nucleotidesPf1N1B4_2452 and Pf1N1B4_2453 overlap by 11 nucleotidesPf1N1B4_2453 and Pf1N1B4_2454 are separated by 192 nucleotides Pf1N1B4_2451 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 2,781,464 to 2,782,504 _2451 Pf1N1B4_2452 - Membrane protein, putative, at 2,782,636 to 2,783,352 _2452 Pf1N1B4_2453 - hypothetical protein, at 2,783,342 to 2,783,473 _2453 Pf1N1B4_2454 - Serine hydroxymethyltransferase (EC 2.1.2.1) (from data), at 2,783,666 to 2,784,919 _2454 Position (kb) 2783 2784Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2782.401 kb on + strandat 2782.460 kb on - strandat 2782.467 kb on + strandat 2782.467 kb on + strandat 2782.468 kb on - strandat 2782.468 kb on - strandat 2782.468 kb on - strandat 2782.530 kb on + strandat 2782.530 kb on + strandat 2782.530 kb on + strandat 2782.530 kb on + strandat 2782.531 kb on - strandat 2782.531 kb on - strandat 2782.616 kb on + strandat 2782.635 kb on + strandat 2782.635 kb on + strandat 2782.635 kb on + strandat 2782.635 kb on + strandat 2782.635 kb on + strandat 2782.635 kb on + strandat 2782.636 kb on - strandat 2782.636 kb on - strandat 2782.636 kb on - strandat 2782.636 kb on - strandat 2782.636 kb on - strandat 2782.717 kb on + strand, within Pf1N1B4_2452at 2782.717 kb on + strand, within Pf1N1B4_2452at 2782.718 kb on - strand, within Pf1N1B4_2452at 2782.744 kb on + strand, within Pf1N1B4_2452at 2782.744 kb on + strand, within Pf1N1B4_2452at 2782.744 kb on + strand, within Pf1N1B4_2452at 2782.744 kb on + strand, within Pf1N1B4_2452at 2782.744 kb on + strand, within Pf1N1B4_2452at 2782.745 kb on - strand, within Pf1N1B4_2452at 2782.745 kb on - strand, within Pf1N1B4_2452at 2782.745 kb on - strand, within Pf1N1B4_2452at 2782.745 kb on - strand, within Pf1N1B4_2452at 2782.863 kb on + strand, within Pf1N1B4_2452at 2782.894 kb on + strand, within Pf1N1B4_2452at 2782.894 kb on + strand, within Pf1N1B4_2452at 2782.894 kb on + strand, within Pf1N1B4_2452at 2782.894 kb on + strand, within Pf1N1B4_2452at 2782.894 kb on + strand, within Pf1N1B4_2452at 2782.894 kb on + strand, within Pf1N1B4_2452at 2782.894 kb on + strand, within Pf1N1B4_2452at 2782.894 kb on + strand, within Pf1N1B4_2452at 2782.894 kb on + strand, within Pf1N1B4_2452at 2782.895 kb on - strand, within Pf1N1B4_2452at 2782.895 kb on - strand, within Pf1N1B4_2452at 2782.895 kb on - strand, within Pf1N1B4_2452at 2782.916 kb on + strand, within Pf1N1B4_2452at 2782.916 kb on + strand, within Pf1N1B4_2452at 2782.917 kb on - strand, within Pf1N1B4_2452at 2782.917 kb on - strand, within Pf1N1B4_2452at 2783.091 kb on + strand, within Pf1N1B4_2452at 2783.104 kb on + strand, within Pf1N1B4_2452at 2783.162 kb on - strand, within Pf1N1B4_2452at 2783.162 kb on - strand, within Pf1N1B4_2452at 2783.164 kb on + strand, within Pf1N1B4_2452at 2783.164 kb on + strand, within Pf1N1B4_2452at 2783.164 kb on + strand, within Pf1N1B4_2452at 2783.164 kb on + strand, within Pf1N1B4_2452at 2783.293 kb on + strandat 2783.293 kb on + strandat 2783.302 kb on + strandat 2783.365 kb on + strand, within Pf1N1B4_2453at 2783.365 kb on + strand, within Pf1N1B4_2453at 2783.366 kb on - strand, within Pf1N1B4_2453at 2783.583 kb on + strandat 2783.583 kb on + strandat 2783.584 kb on - strandat 2783.643 kb on + strandat 2783.643 kb on + strandat 2783.643 kb on + strandat 2783.644 kb on - strandat 2783.644 kb on - strandat 2783.644 kb on - strandat 2783.644 kb on - strandat 2783.644 kb on - strandat 2783.644 kb on - strandat 2783.644 kb on - strandat 2783.644 kb on - strandat 2783.777 kb on + strandat 2783.777 kb on + strandat 2783.777 kb on + strandat 2783.777 kb on + strandat 2783.777 kb on + strandat 2783.778 kb on - strandat 2783.778 kb on - strandat 2783.778 kb on - strandat 2783.778 kb on - strandat 2783.778 kb on - strandat 2783.828 kb on + strand, within Pf1N1B4_2454at 2783.829 kb on - strand, within Pf1N1B4_2454at 2783.858 kb on + strandat 2783.859 kb on - strand, within Pf1N1B4_2454at 2783.934 kb on - strand, within Pf1N1B4_2454at 2783.981 kb on + strand, within Pf1N1B4_2454at 2783.982 kb on - strand, within Pf1N1B4_2454at 2784.083 kb on + strand, within Pf1N1B4_2454at 2784.083 kb on + strand, within Pf1N1B4_2454at 2784.084 kb on - strand, within Pf1N1B4_2454at 2784.084 kb on - strand, within Pf1N1B4_2454at 2784.084 kb on - strand, within Pf1N1B4_2454at 2784.099 kb on - strand, within Pf1N1B4_2454at 2784.324 kb on - strand, within Pf1N1B4_2454

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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2,782,401 + +0.4
2,782,460 - -1.4
2,782,467 + +2.4
2,782,467 + -0.3
2,782,468 - +0.2
2,782,468 - +0.4
2,782,468 - +0.1
2,782,530 + -1.1
2,782,530 + -0.9
2,782,530 + +1.4
2,782,530 + -1.8
2,782,531 - +3.2
2,782,531 - -0.9
2,782,616 + -2.1
2,782,635 + -1.4
2,782,635 + +0.3
2,782,635 + +0.4
2,782,635 + -0.2
2,782,635 + -0.6
2,782,635 + -1.4
2,782,636 - +0.6
2,782,636 - -0.7
2,782,636 - +0.2
2,782,636 - +1.2
2,782,636 - -0.4
2,782,717 + Pf1N1B4_2452 0.11 -0.3
2,782,717 + Pf1N1B4_2452 0.11 +0.3
2,782,718 - Pf1N1B4_2452 0.11 -1.5
2,782,744 + Pf1N1B4_2452 0.15 -0.2
2,782,744 + Pf1N1B4_2452 0.15 -0.9
2,782,744 + Pf1N1B4_2452 0.15 -0.7
2,782,744 + Pf1N1B4_2452 0.15 +1.6
2,782,744 + Pf1N1B4_2452 0.15 +1.4
2,782,745 - Pf1N1B4_2452 0.15 +0.4
2,782,745 - Pf1N1B4_2452 0.15 -0.6
2,782,745 - Pf1N1B4_2452 0.15 +0.8
2,782,745 - Pf1N1B4_2452 0.15 +0.1
2,782,863 + Pf1N1B4_2452 0.32 -0.8
2,782,894 + Pf1N1B4_2452 0.36 -1.6
2,782,894 + Pf1N1B4_2452 0.36 +0.4
2,782,894 + Pf1N1B4_2452 0.36 +1.4
2,782,894 + Pf1N1B4_2452 0.36 -0.3
2,782,894 + Pf1N1B4_2452 0.36 +0.8
2,782,894 + Pf1N1B4_2452 0.36 -0.6
2,782,894 + Pf1N1B4_2452 0.36 -1.9
2,782,894 + Pf1N1B4_2452 0.36 +1.1
2,782,894 + Pf1N1B4_2452 0.36 -2.2
2,782,895 - Pf1N1B4_2452 0.36 +1.8
2,782,895 - Pf1N1B4_2452 0.36 -0.9
2,782,895 - Pf1N1B4_2452 0.36 -1.1
2,782,916 + Pf1N1B4_2452 0.39 -0.6
2,782,916 + Pf1N1B4_2452 0.39 -1.4
2,782,917 - Pf1N1B4_2452 0.39 +0.5
2,782,917 - Pf1N1B4_2452 0.39 +2.0
2,783,091 + Pf1N1B4_2452 0.63 -2.5
2,783,104 + Pf1N1B4_2452 0.65 -0.2
2,783,162 - Pf1N1B4_2452 0.73 +2.4
2,783,162 - Pf1N1B4_2452 0.73 -0.3
2,783,164 + Pf1N1B4_2452 0.74 -0.2
2,783,164 + Pf1N1B4_2452 0.74 +1.0
2,783,164 + Pf1N1B4_2452 0.74 -0.6
2,783,164 + Pf1N1B4_2452 0.74 +1.4
2,783,293 + +1.1
2,783,293 + +0.7
2,783,302 + -0.7
2,783,365 + Pf1N1B4_2453 0.17 +0.4
2,783,365 + Pf1N1B4_2453 0.17 -1.8
2,783,366 - Pf1N1B4_2453 0.18 -3.2
2,783,583 + +1.4
2,783,583 + +1.8
2,783,584 - +0.2
2,783,643 + -0.8
2,783,643 + +1.8
2,783,643 + -1.6
2,783,644 - +2.0
2,783,644 - -0.6
2,783,644 - +1.0
2,783,644 - -1.2
2,783,644 - -1.8
2,783,644 - +0.4
2,783,644 - -0.2
2,783,644 - +1.2
2,783,777 + +1.1
2,783,777 + -0.2
2,783,777 + -0.8
2,783,777 + +1.0
2,783,777 + -0.2
2,783,778 - +0.2
2,783,778 - -1.1
2,783,778 - -2.6
2,783,778 - -0.5
2,783,778 - +1.0
2,783,828 + Pf1N1B4_2454 0.13 +0.4
2,783,829 - Pf1N1B4_2454 0.13 -0.2
2,783,858 + -0.6
2,783,859 - Pf1N1B4_2454 0.15 -0.5
2,783,934 - Pf1N1B4_2454 0.21 +0.5
2,783,981 + Pf1N1B4_2454 0.25 -1.1
2,783,982 - Pf1N1B4_2454 0.25 -1.6
2,784,083 + Pf1N1B4_2454 0.33 -0.7
2,784,083 + Pf1N1B4_2454 0.33 +0.2
2,784,084 - Pf1N1B4_2454 0.33 -0.4
2,784,084 - Pf1N1B4_2454 0.33 -1.0
2,784,084 - Pf1N1B4_2454 0.33 +0.9
2,784,099 - Pf1N1B4_2454 0.35 -1.2
2,784,324 - Pf1N1B4_2454 0.52 -0.0

Or see this region's nucleotide sequence