Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2267 and Pf1N1B4_2268 are separated by 133 nucleotides Pf1N1B4_2268 and Pf1N1B4_2269 are separated by 2 nucleotides Pf1N1B4_2269 and Pf1N1B4_2270 are separated by 129 nucleotides Pf1N1B4_2270 and Pf1N1B4_2271 are separated by 135 nucleotides
Pf1N1B4_2267 - FIG00953078: hypothetical protein, at 2,584,895 to 2,585,647
_2267
Pf1N1B4_2268 - oxidoreductase, 2OG-Fe(II) oxygenase family, at 2,585,781 to 2,586,413
_2268
Pf1N1B4_2269 - Purine nucleoside phosphorylase (EC 2.4.2.1), at 2,586,416 to 2,586,901
_2269
Pf1N1B4_2270 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,587,031 to 2,587,618
_2270
Pf1N1B4_2271 - ATPases of the AAA+ class, at 2,587,754 to 2,588,179
_2271
Position (kb)
2586
2587 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2585.708 kb on + strand at 2585.737 kb on - strand at 2585.737 kb on - strand at 2585.737 kb on - strand at 2585.737 kb on - strand at 2585.777 kb on + strand at 2585.777 kb on + strand at 2585.778 kb on - strand at 2585.778 kb on - strand at 2585.778 kb on - strand at 2585.778 kb on - strand at 2585.778 kb on - strand at 2585.778 kb on - strand at 2585.778 kb on - strand at 2585.778 kb on - strand at 2585.778 kb on - strand at 2585.780 kb on + strand at 2585.780 kb on + strand at 2585.780 kb on + strand at 2585.781 kb on - strand at 2585.781 kb on - strand at 2585.781 kb on - strand at 2585.781 kb on - strand at 2585.781 kb on - strand at 2585.781 kb on - strand at 2585.797 kb on + strand at 2585.797 kb on + strand at 2585.797 kb on + strand at 2585.797 kb on + strand at 2585.821 kb on + strand at 2585.821 kb on + strand at 2585.822 kb on - strand at 2585.822 kb on - strand at 2585.822 kb on - strand at 2585.822 kb on - strand at 2585.822 kb on - strand at 2585.825 kb on + strand at 2585.825 kb on + strand at 2585.826 kb on - strand at 2585.826 kb on - strand at 2585.826 kb on - strand at 2585.867 kb on + strand, within Pf1N1B4_2268 at 2585.868 kb on - strand, within Pf1N1B4_2268 at 2585.868 kb on - strand, within Pf1N1B4_2268 at 2586.002 kb on + strand, within Pf1N1B4_2268 at 2586.045 kb on + strand, within Pf1N1B4_2268 at 2586.045 kb on + strand, within Pf1N1B4_2268 at 2586.045 kb on + strand, within Pf1N1B4_2268 at 2586.045 kb on + strand, within Pf1N1B4_2268 at 2586.045 kb on + strand, within Pf1N1B4_2268 at 2586.045 kb on + strand, within Pf1N1B4_2268 at 2586.045 kb on + strand, within Pf1N1B4_2268 at 2586.045 kb on + strand, within Pf1N1B4_2268 at 2586.046 kb on - strand, within Pf1N1B4_2268 at 2586.046 kb on - strand, within Pf1N1B4_2268 at 2586.046 kb on - strand, within Pf1N1B4_2268 at 2586.046 kb on - strand, within Pf1N1B4_2268 at 2586.046 kb on - strand, within Pf1N1B4_2268 at 2586.046 kb on - strand, within Pf1N1B4_2268 at 2586.150 kb on + strand, within Pf1N1B4_2268 at 2586.150 kb on + strand, within Pf1N1B4_2268 at 2586.150 kb on + strand, within Pf1N1B4_2268 at 2586.151 kb on - strand, within Pf1N1B4_2268 at 2586.210 kb on + strand, within Pf1N1B4_2268 at 2586.210 kb on + strand, within Pf1N1B4_2268 at 2586.211 kb on - strand, within Pf1N1B4_2268 at 2586.211 kb on - strand, within Pf1N1B4_2268 at 2586.211 kb on - strand, within Pf1N1B4_2268 at 2586.211 kb on - strand, within Pf1N1B4_2268 at 2586.258 kb on + strand, within Pf1N1B4_2268 at 2586.258 kb on + strand, within Pf1N1B4_2268 at 2586.258 kb on + strand, within Pf1N1B4_2268 at 2586.258 kb on + strand, within Pf1N1B4_2268 at 2586.258 kb on + strand at 2586.258 kb on + strand, within Pf1N1B4_2268 at 2586.258 kb on + strand, within Pf1N1B4_2268 at 2586.258 kb on + strand, within Pf1N1B4_2268 at 2586.259 kb on - strand, within Pf1N1B4_2268 at 2586.259 kb on - strand, within Pf1N1B4_2268 at 2586.259 kb on - strand, within Pf1N1B4_2268 at 2586.259 kb on - strand, within Pf1N1B4_2268 at 2586.259 kb on - strand, within Pf1N1B4_2268 at 2586.259 kb on - strand, within Pf1N1B4_2268 at 2586.259 kb on - strand, within Pf1N1B4_2268 at 2586.259 kb on - strand, within Pf1N1B4_2268 at 2586.259 kb on - strand, within Pf1N1B4_2268 at 2586.767 kb on + strand, within Pf1N1B4_2269 at 2586.767 kb on + strand, within Pf1N1B4_2269 at 2586.768 kb on - strand, within Pf1N1B4_2269 at 2586.768 kb on - strand, within Pf1N1B4_2269 at 2586.768 kb on - strand, within Pf1N1B4_2269 at 2586.768 kb on - strand, within Pf1N1B4_2269 at 2586.768 kb on - strand, within Pf1N1B4_2269 at 2586.970 kb on - strand at 2586.977 kb on + strand at 2587.015 kb on - strand at 2587.284 kb on + strand, within Pf1N1B4_2270 at 2587.284 kb on + strand, within Pf1N1B4_2270 at 2587.284 kb on + strand, within Pf1N1B4_2270 at 2587.285 kb on - strand, within Pf1N1B4_2270 at 2587.285 kb on - strand, within Pf1N1B4_2270 at 2587.332 kb on - strand, within Pf1N1B4_2270 at 2587.353 kb on + strand, within Pf1N1B4_2270 at 2587.354 kb on - strand, within Pf1N1B4_2270 at 2587.354 kb on - strand, within Pf1N1B4_2270 at 2587.501 kb on + strand, within Pf1N1B4_2270 at 2587.501 kb on + strand, within Pf1N1B4_2270 at 2587.501 kb on + strand, within Pf1N1B4_2270 at 2587.501 kb on + strand, within Pf1N1B4_2270 at 2587.501 kb on + strand, within Pf1N1B4_2270 at 2587.501 kb on + strand, within Pf1N1B4_2270 at 2587.502 kb on - strand, within Pf1N1B4_2270 at 2587.542 kb on - strand, within Pf1N1B4_2270 at 2587.542 kb on - strand, within Pf1N1B4_2270 at 2587.640 kb on + strand at 2587.640 kb on + strand at 2587.766 kb on - strand at 2587.825 kb on + strand, within Pf1N1B4_2271 at 2587.826 kb on - strand, within Pf1N1B4_2271 at 2587.826 kb on - strand, within Pf1N1B4_2271 at 2587.826 kb on - strand, within Pf1N1B4_2271 at 2587.826 kb on - strand, within Pf1N1B4_2271 at 2587.826 kb on - strand, within Pf1N1B4_2271
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 2,585,708 + +1.4 2,585,737 - -0.7 2,585,737 - -2.6 2,585,737 - -1.1 2,585,737 - -0.5 2,585,777 + +1.4 2,585,777 + -1.2 2,585,778 - -0.1 2,585,778 - -0.6 2,585,778 - -0.2 2,585,778 - +0.8 2,585,778 - +1.4 2,585,778 - -0.6 2,585,778 - -0.3 2,585,778 - +1.1 2,585,778 - +0.6 2,585,780 + -0.2 2,585,780 + +1.0 2,585,780 + -0.6 2,585,781 - +1.1 2,585,781 - +0.0 2,585,781 - -0.5 2,585,781 - -0.9 2,585,781 - -0.2 2,585,781 - -1.2 2,585,797 + -1.4 2,585,797 + -1.2 2,585,797 + +1.0 2,585,797 + -1.2 2,585,821 + +0.6 2,585,821 + -1.6 2,585,822 - +0.4 2,585,822 - -1.9 2,585,822 - -0.6 2,585,822 - -1.0 2,585,822 - -1.3 2,585,825 + -1.2 2,585,825 + -1.4 2,585,826 - +0.9 2,585,826 - +0.2 2,585,826 - +1.0 2,585,867 + Pf1N1B4_2268 0.14 -0.9 2,585,868 - Pf1N1B4_2268 0.14 -1.0 2,585,868 - Pf1N1B4_2268 0.14 +1.7 2,586,002 + Pf1N1B4_2268 0.35 -0.2 2,586,045 + Pf1N1B4_2268 0.42 +1.4 2,586,045 + Pf1N1B4_2268 0.42 -0.3 2,586,045 + Pf1N1B4_2268 0.42 +0.2 2,586,045 + Pf1N1B4_2268 0.42 -0.0 2,586,045 + Pf1N1B4_2268 0.42 -0.9 2,586,045 + Pf1N1B4_2268 0.42 -0.6 2,586,045 + Pf1N1B4_2268 0.42 -2.0 2,586,045 + Pf1N1B4_2268 0.42 +0.8 2,586,046 - Pf1N1B4_2268 0.42 -1.8 2,586,046 - Pf1N1B4_2268 0.42 +0.6 2,586,046 - Pf1N1B4_2268 0.42 -1.3 2,586,046 - Pf1N1B4_2268 0.42 -1.2 2,586,046 - Pf1N1B4_2268 0.42 -0.3 2,586,046 - Pf1N1B4_2268 0.42 -1.0 2,586,150 + Pf1N1B4_2268 0.58 +0.4 2,586,150 + Pf1N1B4_2268 0.58 +0.1 2,586,150 + Pf1N1B4_2268 0.58 -0.4 2,586,151 - Pf1N1B4_2268 0.58 +0.9 2,586,210 + Pf1N1B4_2268 0.68 -0.6 2,586,210 + Pf1N1B4_2268 0.68 +2.4 2,586,211 - Pf1N1B4_2268 0.68 -1.2 2,586,211 - Pf1N1B4_2268 0.68 -1.6 2,586,211 - Pf1N1B4_2268 0.68 +0.7 2,586,211 - Pf1N1B4_2268 0.68 -1.8 2,586,258 + Pf1N1B4_2268 0.75 -0.2 2,586,258 + Pf1N1B4_2268 0.75 -1.2 2,586,258 + Pf1N1B4_2268 0.75 +3.0 2,586,258 + Pf1N1B4_2268 0.75 +0.7 2,586,258 + +0.4 2,586,258 + Pf1N1B4_2268 0.75 -0.0 2,586,258 + Pf1N1B4_2268 0.75 +0.1 2,586,258 + Pf1N1B4_2268 0.75 -0.6 2,586,259 - Pf1N1B4_2268 0.76 +0.7 2,586,259 - Pf1N1B4_2268 0.76 -0.9 2,586,259 - Pf1N1B4_2268 0.76 -1.3 2,586,259 - Pf1N1B4_2268 0.76 +0.2 2,586,259 - Pf1N1B4_2268 0.76 -1.2 2,586,259 - Pf1N1B4_2268 0.76 -1.3 2,586,259 - Pf1N1B4_2268 0.76 -1.4 2,586,259 - Pf1N1B4_2268 0.76 -1.3 2,586,259 - Pf1N1B4_2268 0.76 +2.0 2,586,767 + Pf1N1B4_2269 0.72 -1.4 2,586,767 + Pf1N1B4_2269 0.72 -1.9 2,586,768 - Pf1N1B4_2269 0.72 -0.3 2,586,768 - Pf1N1B4_2269 0.72 +1.0 2,586,768 - Pf1N1B4_2269 0.72 -0.9 2,586,768 - Pf1N1B4_2269 0.72 -0.3 2,586,768 - Pf1N1B4_2269 0.72 -1.4 2,586,970 - -1.4 2,586,977 + +1.4 2,587,015 - +1.4 2,587,284 + Pf1N1B4_2270 0.43 -0.0 2,587,284 + Pf1N1B4_2270 0.43 -1.0 2,587,284 + Pf1N1B4_2270 0.43 +0.4 2,587,285 - Pf1N1B4_2270 0.43 -1.5 2,587,285 - Pf1N1B4_2270 0.43 +0.6 2,587,332 - Pf1N1B4_2270 0.51 -0.6 2,587,353 + Pf1N1B4_2270 0.55 +1.2 2,587,354 - Pf1N1B4_2270 0.55 -0.2 2,587,354 - Pf1N1B4_2270 0.55 -0.9 2,587,501 + Pf1N1B4_2270 0.80 -0.4 2,587,501 + Pf1N1B4_2270 0.80 +0.6 2,587,501 + Pf1N1B4_2270 0.80 -0.9 2,587,501 + Pf1N1B4_2270 0.80 +0.4 2,587,501 + Pf1N1B4_2270 0.80 -1.2 2,587,501 + Pf1N1B4_2270 0.80 +1.4 2,587,502 - Pf1N1B4_2270 0.80 -0.9 2,587,542 - Pf1N1B4_2270 0.87 +0.4 2,587,542 - Pf1N1B4_2270 0.87 -1.9 2,587,640 + -1.3 2,587,640 + -0.8 2,587,766 - +0.4 2,587,825 + Pf1N1B4_2271 0.17 -0.1 2,587,826 - Pf1N1B4_2271 0.17 -0.8 2,587,826 - Pf1N1B4_2271 0.17 +0.1 2,587,826 - Pf1N1B4_2271 0.17 -0.1 2,587,826 - Pf1N1B4_2271 0.17 +1.2 2,587,826 - Pf1N1B4_2271 0.17 +2.8
Or see this region's nucleotide sequence