Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1921

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1920 and Pf1N1B4_1921 are separated by 10 nucleotidesPf1N1B4_1921 and Pf1N1B4_1922 are separated by 81 nucleotides Pf1N1B4_1920 - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14), at 2,194,032 to 2,196,086 _1920 Pf1N1B4_1921 - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15), at 2,196,097 to 2,196,630 _1921 Pf1N1B4_1922 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 2,196,712 to 2,197,491 _1922 Position (kb) 2196 2197Strain fitness (log2 ratio) -1 0 1at 2197.563 kb on + strandat 2197.582 kb on + strandat 2197.603 kb on + strandat 2197.603 kb on + strandat 2197.603 kb on + strandat 2197.604 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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2,197,563 + -0.8
2,197,582 + -0.2
2,197,603 + +1.2
2,197,603 + -0.3
2,197,603 + +0.2
2,197,604 - +0.2

Or see this region's nucleotide sequence