Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01950

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01940 and MMP_RS01945 overlap by 26 nucleotidesMMP_RS01945 and MMP_RS01950 overlap by 1 nucleotidesMMP_RS01950 and MMP_RS01955 are separated by 188 nucleotidesMMP_RS01955 and MMP_RS01960 are separated by 12 nucleotides MMP_RS01940: MMP_RS01940 - MoxR family ATPase, at 359,558 to 360,499 _RS01940 MMP_RS01945: MMP_RS01945 - DUF4350 domain-containing protein, at 360,474 to 361,472 _RS01945 MMP_RS01950: MMP_RS01950 - hypothetical protein, at 361,472 to 363,307 _RS01950 MMP_RS01955: MMP_RS01955 - hypothetical protein, at 363,496 to 364,086 _RS01955 MMP_RS01960: MMP_RS01960 - hypothetical protein, at 364,099 to 364,338 _RS01960 Position (kb) 361 362 363 364Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 360.480 kb on + strandat 360.513 kb on - strandat 360.514 kb on + strandat 360.518 kb on - strandat 360.612 kb on + strand, within MMP_RS01945at 360.649 kb on + strand, within MMP_RS01945at 360.743 kb on - strand, within MMP_RS01945at 360.884 kb on - strand, within MMP_RS01945at 360.885 kb on + strand, within MMP_RS01945at 360.901 kb on - strand, within MMP_RS01945at 360.906 kb on - strand, within MMP_RS01945at 360.907 kb on + strand, within MMP_RS01945at 360.992 kb on + strand, within MMP_RS01945at 360.995 kb on - strand, within MMP_RS01945at 360.996 kb on + strand, within MMP_RS01945at 361.013 kb on - strand, within MMP_RS01945at 361.015 kb on - strand, within MMP_RS01945at 361.045 kb on - strand, within MMP_RS01945at 361.274 kb on + strand, within MMP_RS01945at 361.282 kb on - strand, within MMP_RS01945at 361.291 kb on - strand, within MMP_RS01945at 361.292 kb on + strand, within MMP_RS01945at 361.294 kb on + strand, within MMP_RS01945at 361.294 kb on + strand, within MMP_RS01945at 361.548 kb on - strandat 361.595 kb on - strandat 361.601 kb on + strandat 361.683 kb on - strand, within MMP_RS01950at 361.749 kb on + strand, within MMP_RS01950at 361.798 kb on - strand, within MMP_RS01950at 361.803 kb on + strand, within MMP_RS01950at 361.803 kb on + strand, within MMP_RS01950at 361.804 kb on - strand, within MMP_RS01950at 361.812 kb on + strand, within MMP_RS01950at 361.813 kb on - strand, within MMP_RS01950at 361.813 kb on - strand, within MMP_RS01950at 361.825 kb on - strand, within MMP_RS01950at 361.841 kb on - strand, within MMP_RS01950at 361.842 kb on + strand, within MMP_RS01950at 361.842 kb on + strand, within MMP_RS01950at 361.874 kb on + strand, within MMP_RS01950at 361.888 kb on - strand, within MMP_RS01950at 361.888 kb on - strand, within MMP_RS01950at 361.889 kb on + strand, within MMP_RS01950at 361.889 kb on + strand, within MMP_RS01950at 361.891 kb on + strand, within MMP_RS01950at 361.891 kb on + strand, within MMP_RS01950at 361.940 kb on - strand, within MMP_RS01950at 361.946 kb on - strand, within MMP_RS01950at 361.971 kb on - strand, within MMP_RS01950at 361.972 kb on + strand, within MMP_RS01950at 361.972 kb on + strand, within MMP_RS01950at 361.975 kb on + strand, within MMP_RS01950at 362.030 kb on - strand, within MMP_RS01950at 362.299 kb on - strand, within MMP_RS01950at 362.299 kb on - strand, within MMP_RS01950at 362.299 kb on - strand, within MMP_RS01950at 362.299 kb on - strand, within MMP_RS01950at 362.301 kb on - strand, within MMP_RS01950at 362.408 kb on + strand, within MMP_RS01950at 362.437 kb on + strand, within MMP_RS01950at 362.474 kb on + strand, within MMP_RS01950at 362.477 kb on - strand, within MMP_RS01950at 363.101 kb on + strand, within MMP_RS01950at 363.114 kb on - strand, within MMP_RS01950at 363.115 kb on + strand, within MMP_RS01950at 363.115 kb on + strand, within MMP_RS01950at 363.122 kb on + strand, within MMP_RS01950at 363.125 kb on + strandat 363.263 kb on - strandat 363.269 kb on + strandat 363.272 kb on - strandat 363.272 kb on - strandat 363.273 kb on + strandat 363.273 kb on + strandat 363.282 kb on + strandat 363.284 kb on - strandat 363.380 kb on - strandat 363.394 kb on + strandat 363.404 kb on + strandat 363.415 kb on + strandat 363.423 kb on - strandat 363.423 kb on - strandat 363.423 kb on - strandat 363.423 kb on - strandat 363.424 kb on + strandat 363.426 kb on + strandat 363.592 kb on - strand, within MMP_RS01955at 363.593 kb on + strand, within MMP_RS01955at 363.593 kb on + strand, within MMP_RS01955at 363.827 kb on - strand, within MMP_RS01955at 363.830 kb on - strand, within MMP_RS01955at 364.269 kb on - strand, within MMP_RS01960at 364.276 kb on - strand, within MMP_RS01960

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2
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360,480 + -2.6
360,513 - -4.7
360,514 + -2.1
360,518 - -3.1
360,612 + MMP_RS01945 0.14 -3.2
360,649 + MMP_RS01945 0.18 -4.8
360,743 - MMP_RS01945 0.27 -2.8
360,884 - MMP_RS01945 0.41 -2.7
360,885 + MMP_RS01945 0.41 -4.7
360,901 - MMP_RS01945 0.43 -2.5
360,906 - MMP_RS01945 0.43 -3.5
360,907 + MMP_RS01945 0.43 -1.0
360,992 + MMP_RS01945 0.52 +0.5
360,995 - MMP_RS01945 0.52 -3.4
360,996 + MMP_RS01945 0.52 -1.9
361,013 - MMP_RS01945 0.54 -3.6
361,015 - MMP_RS01945 0.54 -3.8
361,045 - MMP_RS01945 0.57 -4.2
361,274 + MMP_RS01945 0.80 -2.9
361,282 - MMP_RS01945 0.81 +1.0
361,291 - MMP_RS01945 0.82 -4.4
361,292 + MMP_RS01945 0.82 -2.3
361,294 + MMP_RS01945 0.82 -1.3
361,294 + MMP_RS01945 0.82 -4.6
361,548 - -2.6
361,595 - +1.3
361,601 + -3.1
361,683 - MMP_RS01950 0.11 +1.2
361,749 + MMP_RS01950 0.15 -1.6
361,798 - MMP_RS01950 0.18 -3.2
361,803 + MMP_RS01950 0.18 -2.3
361,803 + MMP_RS01950 0.18 -1.6
361,804 - MMP_RS01950 0.18 -2.3
361,812 + MMP_RS01950 0.19 -3.7
361,813 - MMP_RS01950 0.19 -4.2
361,813 - MMP_RS01950 0.19 +0.9
361,825 - MMP_RS01950 0.19 -3.5
361,841 - MMP_RS01950 0.20 -4.1
361,842 + MMP_RS01950 0.20 -2.5
361,842 + MMP_RS01950 0.20 -3.8
361,874 + MMP_RS01950 0.22 -1.5
361,888 - MMP_RS01950 0.23 -2.6
361,888 - MMP_RS01950 0.23 -3.6
361,889 + MMP_RS01950 0.23 -2.3
361,889 + MMP_RS01950 0.23 -2.0
361,891 + MMP_RS01950 0.23 +0.8
361,891 + MMP_RS01950 0.23 -3.8
361,940 - MMP_RS01950 0.25 +1.0
361,946 - MMP_RS01950 0.26 -3.7
361,971 - MMP_RS01950 0.27 -3.3
361,972 + MMP_RS01950 0.27 -2.8
361,972 + MMP_RS01950 0.27 -2.3
361,975 + MMP_RS01950 0.27 -2.4
362,030 - MMP_RS01950 0.30 -3.6
362,299 - MMP_RS01950 0.45 -1.9
362,299 - MMP_RS01950 0.45 -0.8
362,299 - MMP_RS01950 0.45 -1.0
362,299 - MMP_RS01950 0.45 -3.0
362,301 - MMP_RS01950 0.45 -3.0
362,408 + MMP_RS01950 0.51 -4.5
362,437 + MMP_RS01950 0.53 -1.8
362,474 + MMP_RS01950 0.55 -3.1
362,477 - MMP_RS01950 0.55 -2.4
363,101 + MMP_RS01950 0.89 -3.5
363,114 - MMP_RS01950 0.89 -2.3
363,115 + MMP_RS01950 0.89 -0.8
363,115 + MMP_RS01950 0.89 -4.3
363,122 + MMP_RS01950 0.90 -3.5
363,125 + -3.8
363,263 - -1.6
363,269 + -3.4
363,272 - -3.7
363,272 - -1.8
363,273 + -3.8
363,273 + -3.4
363,282 + -4.3
363,284 - -2.2
363,380 - -4.6
363,394 + -3.8
363,404 + -2.4
363,415 + -0.3
363,423 - -2.2
363,423 - -2.6
363,423 - -2.8
363,423 - -2.2
363,424 + -3.7
363,426 + -1.5
363,592 - MMP_RS01955 0.16 -3.3
363,593 + MMP_RS01955 0.16 -2.9
363,593 + MMP_RS01955 0.16 -3.7
363,827 - MMP_RS01955 0.56 -2.6
363,830 - MMP_RS01955 0.57 -1.0
364,269 - MMP_RS01960 0.71 -1.3
364,276 - MMP_RS01960 0.74 -1.2

Or see this region's nucleotide sequence