Experiment: nitrate (N); low aeration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20250 and HSERO_RS20255 are separated by 13 nucleotides HSERO_RS20255 and HSERO_RS20260 are separated by 43 nucleotides HSERO_RS20260 and HSERO_RS20265 are separated by 18 nucleotides HSERO_RS20265 and HSERO_RS20270 are separated by 33 nucleotides
HSERO_RS20250: HSERO_RS20250 - large conductance mechanosensitive channel protein MscL, at 4,646,736 to 4,647,173
_RS20250
HSERO_RS20255: HSERO_RS20255 - metal-binding protein, at 4,647,187 to 4,647,951
_RS20255
HSERO_RS20260: HSERO_RS20260 - 2-alkenal reductase, at 4,647,995 to 4,649,176
_RS20260
HSERO_RS20265: HSERO_RS20265 - hypothetical protein, at 4,649,195 to 4,649,890
_RS20265
HSERO_RS20270: HSERO_RS20270 - transcription regulator protein, at 4,649,924 to 4,650,634
_RS20270
Position (kb) 4647
4648
4649
4650 Strain fitness (log2 ratio) -2
-1
0
1 at 4647.167 kb on + strand at 4647.174 kb on + strand at 4647.174 kb on + strand at 4647.182 kb on - strand at 4647.182 kb on - strand at 4647.657 kb on - strand, within HSERO_RS20255 at 4647.710 kb on - strand, within HSERO_RS20255 at 4647.788 kb on + strand, within HSERO_RS20255 at 4647.833 kb on - strand, within HSERO_RS20255 at 4647.855 kb on - strand, within HSERO_RS20255 at 4647.917 kb on + strand at 4648.187 kb on + strand, within HSERO_RS20260 at 4648.517 kb on + strand, within HSERO_RS20260 at 4648.622 kb on + strand, within HSERO_RS20260 at 4649.269 kb on - strand, within HSERO_RS20265 at 4649.757 kb on + strand, within HSERO_RS20265 at 4649.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N); low aeration remove 4,647,167 + +0.2 4,647,174 + +0.1 4,647,174 + -0.0 4,647,182 - -1.2 4,647,182 - +0.6 4,647,657 - HSERO_RS20255 0.61 -0.5 4,647,710 - HSERO_RS20255 0.68 +0.2 4,647,788 + HSERO_RS20255 0.79 -0.2 4,647,833 - HSERO_RS20255 0.84 -0.1 4,647,855 - HSERO_RS20255 0.87 +0.4 4,647,917 + -0.6 4,648,187 + HSERO_RS20260 0.16 -1.3 4,648,517 + HSERO_RS20260 0.44 -1.5 4,648,622 + HSERO_RS20260 0.53 -0.4 4,649,269 - HSERO_RS20265 0.11 -0.4 4,649,757 + HSERO_RS20265 0.81 +0.2 4,649,896 + -2.4
Or see this region's nucleotide sequence