Experiment: nitrate (N); low aeration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04255 and HSERO_RS04260 are separated by 105 nucleotides HSERO_RS04260 and HSERO_RS04265 are separated by 9 nucleotides HSERO_RS04265 and HSERO_RS04270 are separated by 78 nucleotides HSERO_RS04270 and HSERO_RS04275 are separated by 31 nucleotides
HSERO_RS04255: HSERO_RS04255 - hypothetical protein, at 935,625 to 936,275
_RS04255
HSERO_RS04260: HSERO_RS04260 - cysteine methyltransferase, at 936,381 to 936,884
_RS04260
HSERO_RS04265: HSERO_RS04265 - tyrosine recombinase XerD, at 936,894 to 937,817
_RS04265
HSERO_RS04270: HSERO_RS04270 - membrane protein, at 937,896 to 938,396
_RS04270
HSERO_RS04275: HSERO_RS04275 - glycerol-3-phosphate acyltransferase, at 938,428 to 939,045
_RS04275
Position (kb) 936
937
938 Strain fitness (log2 ratio) -1
0
1 at 935.896 kb on + strand, within HSERO_RS04255 at 935.909 kb on - strand, within HSERO_RS04255 at 936.035 kb on + strand, within HSERO_RS04255 at 936.074 kb on + strand, within HSERO_RS04255 at 936.097 kb on - strand, within HSERO_RS04255 at 936.196 kb on + strand, within HSERO_RS04255 at 936.196 kb on + strand, within HSERO_RS04255 at 936.204 kb on - strand, within HSERO_RS04255 at 936.271 kb on + strand at 936.346 kb on - strand at 936.476 kb on + strand, within HSERO_RS04260 at 936.546 kb on + strand, within HSERO_RS04260 at 936.571 kb on - strand at 936.677 kb on - strand, within HSERO_RS04260 at 936.751 kb on - strand, within HSERO_RS04260 at 937.055 kb on + strand, within HSERO_RS04265 at 937.847 kb on + strand at 937.851 kb on + strand at 937.851 kb on + strand at 937.936 kb on + strand at 937.965 kb on - strand, within HSERO_RS04270 at 938.029 kb on + strand, within HSERO_RS04270 at 938.257 kb on - strand, within HSERO_RS04270 at 938.390 kb on + strand at 938.390 kb on + strand at 938.395 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N); low aeration remove 935,896 + HSERO_RS04255 0.42 -0.2 935,909 - HSERO_RS04255 0.44 +0.8 936,035 + HSERO_RS04255 0.63 -0.3 936,074 + HSERO_RS04255 0.69 +0.1 936,097 - HSERO_RS04255 0.73 +0.2 936,196 + HSERO_RS04255 0.88 -0.4 936,196 + HSERO_RS04255 0.88 -0.3 936,204 - HSERO_RS04255 0.89 -0.2 936,271 + -0.3 936,346 - -0.0 936,476 + HSERO_RS04260 0.19 +0.1 936,546 + HSERO_RS04260 0.33 -0.4 936,571 - +0.8 936,677 - HSERO_RS04260 0.59 -0.5 936,751 - HSERO_RS04260 0.73 +0.1 937,055 + HSERO_RS04265 0.17 -0.8 937,847 + -0.2 937,851 + -0.3 937,851 + +0.4 937,936 + -0.8 937,965 - HSERO_RS04270 0.14 -1.2 938,029 + HSERO_RS04270 0.27 -0.4 938,257 - HSERO_RS04270 0.72 -0.6 938,390 + -0.1 938,390 + -0.1 938,395 + +0.8
Or see this region's nucleotide sequence