Experiment: nitrate (N); low aeration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03035 and HSERO_RS03040 are separated by 193 nucleotides HSERO_RS03040 and HSERO_RS03045 are separated by 87 nucleotides HSERO_RS03045 and HSERO_RS03050 are separated by 71 nucleotides HSERO_RS03050 and HSERO_RS03055 are separated by 36 nucleotides
HSERO_RS03035: HSERO_RS03035 - small protein A, at 664,144 to 664,689
_RS03035
HSERO_RS03040: HSERO_RS03040 - Fur family transcriptional regulator, at 664,883 to 665,308
_RS03040
HSERO_RS03045: HSERO_RS03045 - HrcA family transcriptional regulator, at 665,396 to 666,424
_RS03045
HSERO_RS03050: HSERO_RS03050 - hydrolase, at 666,496 to 667,230
_RS03050
HSERO_RS03055: HSERO_RS03055 - inorganic polyphosphate/ATP-NAD kinase, at 667,267 to 668,184
_RS03055
Position (kb) 665
666
667 Strain fitness (log2 ratio) -2
-1
0
1 at 665.315 kb on + strand at 665.459 kb on + strand at 665.614 kb on + strand, within HSERO_RS03045 at 665.727 kb on - strand, within HSERO_RS03045 at 665.738 kb on - strand, within HSERO_RS03045 at 665.851 kb on + strand, within HSERO_RS03045 at 665.863 kb on + strand, within HSERO_RS03045 at 665.868 kb on + strand, within HSERO_RS03045 at 665.991 kb on - strand, within HSERO_RS03045 at 666.083 kb on + strand, within HSERO_RS03045 at 666.083 kb on + strand, within HSERO_RS03045 at 666.243 kb on - strand, within HSERO_RS03045 at 666.387 kb on + strand at 666.387 kb on + strand at 666.388 kb on - strand at 666.395 kb on - strand at 666.397 kb on - strand at 666.560 kb on + strand at 666.608 kb on + strand, within HSERO_RS03050 at 666.736 kb on - strand, within HSERO_RS03050 at 666.817 kb on - strand, within HSERO_RS03050 at 666.887 kb on - strand, within HSERO_RS03050 at 666.904 kb on + strand, within HSERO_RS03050 at 666.907 kb on - strand, within HSERO_RS03050 at 666.907 kb on - strand, within HSERO_RS03050 at 666.912 kb on - strand, within HSERO_RS03050 at 667.024 kb on - strand, within HSERO_RS03050 at 667.028 kb on + strand, within HSERO_RS03050 at 667.107 kb on - strand, within HSERO_RS03050 at 667.149 kb on + strand, within HSERO_RS03050 at 667.209 kb on + strand at 667.217 kb on - strand at 667.265 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N); low aeration remove 665,315 + -0.6 665,459 + -0.8 665,614 + HSERO_RS03045 0.21 -1.1 665,727 - HSERO_RS03045 0.32 -0.5 665,738 - HSERO_RS03045 0.33 -0.2 665,851 + HSERO_RS03045 0.44 -0.4 665,863 + HSERO_RS03045 0.45 -0.5 665,868 + HSERO_RS03045 0.46 -0.9 665,991 - HSERO_RS03045 0.58 -0.7 666,083 + HSERO_RS03045 0.67 -0.8 666,083 + HSERO_RS03045 0.67 -0.9 666,243 - HSERO_RS03045 0.82 +0.7 666,387 + -0.7 666,387 + -2.0 666,388 - -0.7 666,395 - -1.3 666,397 - -1.1 666,560 + -0.1 666,608 + HSERO_RS03050 0.15 +0.3 666,736 - HSERO_RS03050 0.33 -0.3 666,817 - HSERO_RS03050 0.44 -0.4 666,887 - HSERO_RS03050 0.53 -0.4 666,904 + HSERO_RS03050 0.56 -1.0 666,907 - HSERO_RS03050 0.56 -0.7 666,907 - HSERO_RS03050 0.56 +0.2 666,912 - HSERO_RS03050 0.57 +0.4 667,024 - HSERO_RS03050 0.72 +0.4 667,028 + HSERO_RS03050 0.72 +0.2 667,107 - HSERO_RS03050 0.83 -0.4 667,149 + HSERO_RS03050 0.89 +0.1 667,209 + +0.4 667,217 - -0.4 667,265 + +0.2
Or see this region's nucleotide sequence