Experiment: PYE with nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03193 and CCNA_03194 are separated by 13 nucleotides CCNA_03194 and CCNA_03987 are separated by 84 nucleotides CCNA_03987 and CCNA_03195 overlap by 4 nucleotides
CCNA_03193: CCNA_03193 - lactoylglutathione lyase, at 3,354,463 to 3,355,041
_03193
CCNA_03194: CCNA_03194 - conserved inner membrane protein, at 3,355,055 to 3,355,417
_03194
CCNA_03987: CCNA_03987 - hypothetical protein, at 3,355,502 to 3,355,606
_03987
CCNA_03195: CCNA_03195 - RNA polymerase sigma factor RpoH, at 3,355,603 to 3,356,499
_03195
Position (kb)
3355
3356 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3354.561 kb on - strand, within CCNA_03193 at 3354.565 kb on + strand, within CCNA_03193 at 3354.565 kb on + strand, within CCNA_03193 at 3354.569 kb on - strand, within CCNA_03193 at 3354.573 kb on - strand, within CCNA_03193 at 3354.677 kb on + strand, within CCNA_03193 at 3354.690 kb on + strand, within CCNA_03193 at 3354.720 kb on - strand, within CCNA_03193 at 3354.725 kb on - strand, within CCNA_03193 at 3354.746 kb on + strand, within CCNA_03193 at 3354.746 kb on + strand, within CCNA_03193 at 3354.746 kb on + strand, within CCNA_03193 at 3354.746 kb on + strand, within CCNA_03193 at 3354.754 kb on - strand, within CCNA_03193 at 3354.766 kb on - strand, within CCNA_03193 at 3354.766 kb on - strand, within CCNA_03193 at 3354.774 kb on - strand, within CCNA_03193 at 3354.775 kb on - strand, within CCNA_03193 at 3354.775 kb on - strand, within CCNA_03193 at 3354.775 kb on - strand, within CCNA_03193 at 3354.817 kb on + strand, within CCNA_03193 at 3354.823 kb on + strand, within CCNA_03193 at 3354.830 kb on - strand, within CCNA_03193 at 3354.836 kb on - strand, within CCNA_03193 at 3354.867 kb on - strand, within CCNA_03193 at 3354.869 kb on + strand at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.909 kb on + strand, within CCNA_03193 at 3354.915 kb on + strand, within CCNA_03193 at 3354.917 kb on + strand, within CCNA_03193 at 3354.917 kb on + strand, within CCNA_03193 at 3354.925 kb on - strand, within CCNA_03193 at 3354.925 kb on - strand, within CCNA_03193 at 3354.932 kb on + strand, within CCNA_03193 at 3354.950 kb on - strand, within CCNA_03193 at 3354.960 kb on - strand, within CCNA_03193 at 3354.963 kb on + strand, within CCNA_03193 at 3355.090 kb on - strand at 3355.122 kb on - strand, within CCNA_03194 at 3355.122 kb on - strand, within CCNA_03194 at 3355.159 kb on + strand, within CCNA_03194 at 3355.159 kb on + strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.169 kb on + strand, within CCNA_03194 at 3355.177 kb on - strand, within CCNA_03194 at 3355.228 kb on - strand, within CCNA_03194 at 3355.233 kb on - strand, within CCNA_03194 at 3355.241 kb on + strand, within CCNA_03194 at 3355.249 kb on - strand, within CCNA_03194 at 3355.249 kb on - strand, within CCNA_03194 at 3355.270 kb on - strand, within CCNA_03194 at 3355.314 kb on - strand, within CCNA_03194 at 3355.319 kb on - strand, within CCNA_03194 at 3355.319 kb on - strand, within CCNA_03194 at 3355.332 kb on - strand, within CCNA_03194 at 3355.332 kb on - strand, within CCNA_03194 at 3355.341 kb on + strand, within CCNA_03194 at 3355.355 kb on + strand, within CCNA_03194 at 3355.412 kb on + strand at 3355.412 kb on + strand at 3355.412 kb on + strand at 3355.420 kb on + strand at 3355.420 kb on - strand at 3355.420 kb on - strand at 3355.445 kb on + strand at 3355.446 kb on + strand at 3355.515 kb on + strand, within CCNA_03987 at 3355.523 kb on - strand, within CCNA_03987 at 3355.523 kb on - strand, within CCNA_03987 at 3355.523 kb on - strand, within CCNA_03987 at 3355.545 kb on - strand, within CCNA_03987 at 3356.448 kb on + strand at 3356.544 kb on - strand at 3356.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM remove 3,354,561 - CCNA_03193 0.17 -0.4 3,354,565 + CCNA_03193 0.18 +1.7 3,354,565 + CCNA_03193 0.18 -0.4 3,354,569 - CCNA_03193 0.18 -0.1 3,354,573 - CCNA_03193 0.19 -0.8 3,354,677 + CCNA_03193 0.37 -0.2 3,354,690 + CCNA_03193 0.39 -1.0 3,354,720 - CCNA_03193 0.44 +1.0 3,354,725 - CCNA_03193 0.45 -0.1 3,354,746 + CCNA_03193 0.49 -0.2 3,354,746 + CCNA_03193 0.49 +0.4 3,354,746 + CCNA_03193 0.49 +0.1 3,354,746 + CCNA_03193 0.49 +0.8 3,354,754 - CCNA_03193 0.50 -0.8 3,354,766 - CCNA_03193 0.52 -0.1 3,354,766 - CCNA_03193 0.52 -0.8 3,354,774 - CCNA_03193 0.54 +0.6 3,354,775 - CCNA_03193 0.54 +0.8 3,354,775 - CCNA_03193 0.54 +0.7 3,354,775 - CCNA_03193 0.54 +0.3 3,354,817 + CCNA_03193 0.61 -1.2 3,354,823 + CCNA_03193 0.62 -1.5 3,354,830 - CCNA_03193 0.63 +0.2 3,354,836 - CCNA_03193 0.64 +0.6 3,354,867 - CCNA_03193 0.70 -0.6 3,354,869 + +1.3 3,354,887 + CCNA_03193 0.73 -0.7 3,354,887 + CCNA_03193 0.73 -0.2 3,354,887 + CCNA_03193 0.73 -0.4 3,354,887 + CCNA_03193 0.73 -0.4 3,354,887 + CCNA_03193 0.73 +0.0 3,354,887 + CCNA_03193 0.73 -1.4 3,354,887 + CCNA_03193 0.73 -2.0 3,354,895 - CCNA_03193 0.75 +0.6 3,354,895 - CCNA_03193 0.75 +0.6 3,354,895 - CCNA_03193 0.75 +1.2 3,354,895 - CCNA_03193 0.75 -1.8 3,354,895 - CCNA_03193 0.75 -1.4 3,354,895 - CCNA_03193 0.75 +1.3 3,354,895 - CCNA_03193 0.75 +0.0 3,354,895 - CCNA_03193 0.75 -1.6 3,354,909 + CCNA_03193 0.77 +0.1 3,354,915 + CCNA_03193 0.78 -0.8 3,354,917 + CCNA_03193 0.78 -1.9 3,354,917 + CCNA_03193 0.78 +0.6 3,354,925 - CCNA_03193 0.80 +1.0 3,354,925 - CCNA_03193 0.80 +0.4 3,354,932 + CCNA_03193 0.81 +0.0 3,354,950 - CCNA_03193 0.84 +0.3 3,354,960 - CCNA_03193 0.86 -0.5 3,354,963 + CCNA_03193 0.86 -0.7 3,355,090 - +0.3 3,355,122 - CCNA_03194 0.18 +0.4 3,355,122 - CCNA_03194 0.18 -0.7 3,355,159 + CCNA_03194 0.29 -1.8 3,355,159 + CCNA_03194 0.29 -0.9 3,355,167 - CCNA_03194 0.31 +1.6 3,355,167 - CCNA_03194 0.31 +0.4 3,355,167 - CCNA_03194 0.31 +1.6 3,355,167 - CCNA_03194 0.31 +1.2 3,355,167 - CCNA_03194 0.31 +0.9 3,355,167 - CCNA_03194 0.31 +0.9 3,355,169 + CCNA_03194 0.31 +0.3 3,355,177 - CCNA_03194 0.34 -0.6 3,355,228 - CCNA_03194 0.48 -1.2 3,355,233 - CCNA_03194 0.49 -0.0 3,355,241 + CCNA_03194 0.51 -0.7 3,355,249 - CCNA_03194 0.53 -1.5 3,355,249 - CCNA_03194 0.53 +0.2 3,355,270 - CCNA_03194 0.59 +0.6 3,355,314 - CCNA_03194 0.71 +0.4 3,355,319 - CCNA_03194 0.73 +0.4 3,355,319 - CCNA_03194 0.73 +0.8 3,355,332 - CCNA_03194 0.76 +0.4 3,355,332 - CCNA_03194 0.76 +1.1 3,355,341 + CCNA_03194 0.79 -0.4 3,355,355 + CCNA_03194 0.83 +1.1 3,355,412 + -0.1 3,355,412 + +0.3 3,355,412 + +0.6 3,355,420 + +0.8 3,355,420 - -1.7 3,355,420 - +0.4 3,355,445 + +2.0 3,355,446 + -1.5 3,355,515 + CCNA_03987 0.12 -0.2 3,355,523 - CCNA_03987 0.20 -1.1 3,355,523 - CCNA_03987 0.20 -1.5 3,355,523 - CCNA_03987 0.20 -1.3 3,355,545 - CCNA_03987 0.41 +1.0 3,356,448 + +2.3 3,356,544 - -1.2 3,356,579 - +1.4
Or see this region's nucleotide sequence