Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03382

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
3,552,826	-		CCNA_03381	0.16	+0.8
3,552,844	+		CCNA_03381	0.17	+1.4
3,552,852	-		CCNA_03381	0.18	-0.4
3,553,007	-		CCNA_03381	0.32	-1.5
3,553,007	-		CCNA_03381	0.32	-1.9
3,553,007	-		CCNA_03381	0.32	-0.6
3,553,007	-		CCNA_03381	0.32	-0.2
3,553,008	-		CCNA_03381	0.33	+0.2
3,553,023	-		CCNA_03381	0.34	-1.0
3,553,023	-		CCNA_03381	0.34	-1.1
3,553,052	-		CCNA_03381	0.37	+0.9
3,553,080	+		CCNA_03381	0.39	+1.0
3,553,087	-		CCNA_03381	0.40	-0.8
3,553,088	-		CCNA_03381	0.40	+0.4
3,553,088	-		CCNA_03381	0.40	-2.2
3,553,098	-		CCNA_03381	0.41	-2.0
3,553,099	-		CCNA_03381	0.41	+0.2
3,553,134	-		CCNA_03381	0.44	-0.2
3,553,167	-		CCNA_03381	0.47	-2.9
3,553,241	-		CCNA_03381	0.54	+0.7
3,553,265	+		CCNA_03381	0.57	+0.2
3,553,265	+		CCNA_03381	0.57	-1.3
3,553,284	+		CCNA_03381	0.58	-0.0
3,553,292	-		CCNA_03381	0.59	+1.1
3,553,298	+		CCNA_03381	0.60	-2.5
3,553,298	+		CCNA_03381	0.60	-1.5
3,553,306	-		CCNA_03381	0.60	-1.8
3,553,306	-		CCNA_03381	0.60	+0.6
3,553,306	-		CCNA_03381	0.60	-0.9
3,553,321	+		CCNA_03381	0.62	-0.3
3,553,394	+		CCNA_03381	0.69	+0.6
3,553,394	+		CCNA_03381	0.69	-0.7
3,553,397	-		CCNA_03381	0.69	-2.0
3,553,397	-		CCNA_03381	0.69	-1.6
3,553,402	-		CCNA_03381	0.69	-2.6
3,553,412	+		CCNA_03381	0.70	+0.6
3,553,420	-		CCNA_03381	0.71	-1.0
3,553,443	+		CCNA_03381	0.73	+0.7
3,553,451	-		CCNA_03381	0.74	+0.6
3,553,451	-		CCNA_03381	0.74	-1.0
3,553,452	-		CCNA_03381	0.74	+0.2
3,553,486	+		CCNA_03381	0.77	+1.4
3,553,486	+		CCNA_03381	0.77	-0.2
3,553,505	+		CCNA_03381	0.79	-0.5
3,553,513	-		CCNA_03381	0.80	-2.0
3,553,513	-		CCNA_03381	0.80	-2.2
3,553,538	+		CCNA_03381	0.82	+0.8
3,553,541	+		CCNA_03381	0.82	+0.0
3,553,541	-		CCNA_03381	0.82	-1.1
3,553,546	+		CCNA_03381	0.83	-2.3
3,553,546	+		CCNA_03381	0.83	-0.5
3,553,546	+		CCNA_03381	0.83	+1.7
3,553,546	+		CCNA_03381	0.83	+0.8
3,553,546	+		CCNA_03381	0.83	-1.5
3,553,546	+		CCNA_03381	0.83	+1.3
3,553,546	+		CCNA_03381	0.83	-1.8
3,553,546	+		CCNA_03381	0.83	-0.2
3,553,546	+		CCNA_03381	0.83	-0.2
3,553,546	+		CCNA_03381	0.83	-1.0
3,553,546	+		CCNA_03381	0.83	+0.7
3,553,546	+		CCNA_03381	0.83	-0.0
3,553,546	+		CCNA_03381	0.83	-0.5
3,553,546	+		CCNA_03381	0.83	+1.2
3,553,546	+		CCNA_03381	0.83	+0.1
3,553,546	+		CCNA_03381	0.83	-0.2
3,553,546	+		CCNA_03381	0.83	+1.8
3,553,546	+		CCNA_03381	0.83	+0.4
3,553,546	+		CCNA_03381	0.83	+0.1
3,553,546	+		CCNA_03381	0.83	+0.1
3,553,546	+		CCNA_03381	0.83	+1.1
3,553,546	+		CCNA_03381	0.83	-0.6
3,553,546	+		CCNA_03381	0.83	-0.6
3,553,546	+		CCNA_03381	0.83	-1.1
3,553,546	+		CCNA_03381	0.83	-0.4
3,553,546	+		CCNA_03381	0.83	+0.1
3,553,546	+		CCNA_03381	0.83	-1.4
3,553,546	+		CCNA_03381	0.83	-1.1
3,553,546	+		CCNA_03381	0.83	-0.5
3,553,546	+		CCNA_03381	0.83	+0.2
3,553,546	+		CCNA_03381	0.83	-1.1
3,553,546	+		CCNA_03381	0.83	+1.4
3,553,546	+		CCNA_03381	0.83	-1.6
3,553,546	+		CCNA_03381	0.83	-1.8
3,553,546	+		CCNA_03381	0.83	+0.1
3,553,554	-		CCNA_03381	0.84	-1.1
3,553,554	-		CCNA_03381	0.84	-1.4
3,553,554	-		CCNA_03381	0.84	-1.8
3,553,554	-		CCNA_03381	0.84	-0.2
3,553,554	-		CCNA_03381	0.84	-0.6
3,553,554	-		CCNA_03381	0.84	-0.8
3,553,554	-		CCNA_03381	0.84	+0.4
3,553,554	-		CCNA_03381	0.84	-1.7
3,553,554	-		CCNA_03381	0.84	-0.1
3,553,554	-		CCNA_03381	0.84	+0.4
3,553,554	-		CCNA_03381	0.84	-1.4
3,553,554	-		CCNA_03381	0.84	-0.5
3,553,554	-		CCNA_03381	0.84	-0.6
3,553,554	-		CCNA_03381	0.84	-0.6
3,553,554	-		CCNA_03381	0.84	-1.1
3,553,554	-		CCNA_03381	0.84	-0.5
3,553,554	-		CCNA_03381	0.84	-0.3
3,553,554	-		CCNA_03381	0.84	+0.8
3,553,554	-		CCNA_03381	0.84	+0.0
3,553,554	-		CCNA_03381	0.84	-0.9
3,553,554	-		CCNA_03381	0.84	-1.5
3,553,554	-		CCNA_03381	0.84	+0.9
3,553,554	-		CCNA_03381	0.84	-0.1
3,553,554	-		CCNA_03381	0.84	-0.3
3,553,554	-		CCNA_03381	0.84	-2.6
3,553,554	-		CCNA_03381	0.84	-1.4
3,553,554	-		CCNA_03381	0.84	-1.1
3,553,554	-		CCNA_03381	0.84	-0.9
3,553,554	-		CCNA_03381	0.84	-2.0
3,553,554	-		CCNA_03381	0.84	-1.5
3,553,554	-		CCNA_03381	0.84	-0.4
3,553,554	-		CCNA_03381	0.84	-2.7
3,553,554	-		CCNA_03381	0.84	+0.6
3,553,554	-		CCNA_03381	0.84	+1.0
3,553,554	-		CCNA_03381	0.84	-0.9
3,553,554	-		CCNA_03381	0.84	-0.2
3,553,554	-		CCNA_03381	0.84	-0.1
3,553,554	-		CCNA_03381	0.84	-2.9
3,553,554	-		CCNA_03381	0.84	-2.2
3,553,554	-		CCNA_03381	0.84	+0.2
3,553,554	-		CCNA_03381	0.84	-0.1
3,553,554	-		CCNA_03381	0.84	+0.0
3,553,554	-		CCNA_03381	0.84	+0.4
3,553,554	-		CCNA_03381	0.84	-1.7
3,553,554	-		CCNA_03381	0.84	-1.5
3,553,554	-		CCNA_03381	0.84	+0.5
3,553,554	-		CCNA_03381	0.84	-2.0
3,553,554	-		CCNA_03381	0.84	-1.3
3,553,554	-		CCNA_03381	0.84	-1.2
3,553,554	-		CCNA_03381	0.84	+0.2
3,553,554	-		CCNA_03381	0.84	+0.4
3,553,554	-		CCNA_03381	0.84	-1.8
3,553,591	+		CCNA_03381	0.87	-0.1
3,553,591	+		CCNA_03381	0.87	+0.0
3,553,591	+		CCNA_03381	0.87	-0.5
3,553,591	+		CCNA_03381	0.87	-1.1
3,553,597	+		CCNA_03381	0.88	-2.3
3,553,605	+		CCNA_03381	0.88	-1.0
3,553,628	-				-2.6
3,553,639	+				-3.4
3,553,639	+				-1.9
3,553,639	+				+0.1
3,553,639	+				-0.9
3,553,651	+				-0.9
3,553,659	-				+0.8
3,553,668	-				+0.6
3,553,696	+				-1.6
3,553,706	-				-0.2
3,553,740	+				-0.2
3,553,744	+				-1.7
3,553,752	-				-1.5
3,553,759	-				-1.3
3,553,761	+				+2.4
3,553,774	+				-1.2
3,553,855	+				+2.2
3,553,873	-				-2.0
3,553,880	+				-0.6
3,553,904	+				+0.8
3,553,909	-				-0.8
3,553,989	-		CCNA_03382	0.13	-1.7
3,553,989	-		CCNA_03382	0.13	-1.1
3,554,010	+		CCNA_03382	0.15	-1.9
3,554,013	-		CCNA_03382	0.15	-1.5
3,554,016	+		CCNA_03382	0.15	-0.8
3,554,047	-		CCNA_03382	0.18	-0.1
3,554,055	-		CCNA_03382	0.18	+1.4
3,554,103	+		CCNA_03382	0.22	+0.0
3,554,116	-		CCNA_03382	0.23	-1.5
3,554,138	+		CCNA_03382	0.25	-0.1
3,554,143	+		CCNA_03382	0.25	-1.9
3,554,143	+		CCNA_03382	0.25	-1.2
3,554,151	-		CCNA_03382	0.26	-0.6
3,554,153	+		CCNA_03382	0.26	+0.4
3,554,153	+		CCNA_03382	0.26	-2.2
3,554,153	+		CCNA_03382	0.26	-0.7
3,554,161	-		CCNA_03382	0.26	+0.2
3,554,161	-		CCNA_03382	0.26	+0.8
3,554,188	+		CCNA_03382	0.28	-0.7
3,554,196	-		CCNA_03382	0.29	-2.3
3,554,213	+		CCNA_03382	0.30	-1.9
3,554,214	-		CCNA_03382	0.30	-1.4
3,554,234	+		CCNA_03382	0.32	-1.0
3,554,234	+		CCNA_03382	0.32	-0.7
3,554,242	-		CCNA_03382	0.33	+1.0
3,554,242	-		CCNA_03382	0.33	-2.6
3,554,242	-		CCNA_03382	0.33	-2.2
3,554,262	-		CCNA_03382	0.34	-0.2
3,554,327	+		CCNA_03382	0.39	-3.2
3,554,340	+				+1.4
3,554,359	+		CCNA_03382	0.42	-1.3
3,554,379	-		CCNA_03382	0.43	-1.0
3,554,387	+		CCNA_03382	0.44	-0.3
3,554,398	+		CCNA_03382	0.45	-0.7
3,554,406	-		CCNA_03382	0.45	-1.0
3,554,406	-		CCNA_03382	0.45	-0.1
3,554,422	-		CCNA_03382	0.46	-1.0
3,554,425	+		CCNA_03382	0.47	-0.8
3,554,433	-		CCNA_03382	0.47	+1.6
3,554,448	-		CCNA_03382	0.48	+0.5
3,554,462	+		CCNA_03382	0.50	+0.2
3,554,467	+		CCNA_03382	0.50	-1.2
3,554,475	-		CCNA_03382	0.51	+0.6
3,554,476	-		CCNA_03382	0.51	-0.8
3,554,477	+		CCNA_03382	0.51	-2.0
3,554,485	-		CCNA_03382	0.51	+0.8
3,554,486	-		CCNA_03382	0.51	-1.5
3,554,507	+		CCNA_03382	0.53	-0.4
3,554,516	-		CCNA_03382	0.54	-1.0
3,554,518	+		CCNA_03382	0.54	+0.3
3,554,545	-		CCNA_03382	0.56	-1.7
3,554,561	-		CCNA_03382	0.57	+0.2
3,554,566	-		CCNA_03382	0.58	-1.2
3,554,580	+		CCNA_03382	0.59	-0.4
3,554,613	+		CCNA_03382	0.61	-1.0
3,554,629	+		CCNA_03382	0.62	+0.0
3,554,652	+		CCNA_03382	0.64	+1.0
3,554,654	-		CCNA_03382	0.64	-0.7
3,554,665	+		CCNA_03382	0.65	-0.8
3,554,665	+		CCNA_03382	0.65	-1.3
3,554,714	+		CCNA_03382	0.69	-1.5
3,554,722	-		CCNA_03382	0.70	-1.8
3,554,734	+		CCNA_03382	0.70	-0.0
3,554,734	+		CCNA_03382	0.70	+0.3
3,554,742	-		CCNA_03382	0.71	-2.6
3,554,745	+		CCNA_03382	0.71	+0.0
3,554,745	+		CCNA_03382	0.71	-3.3
3,554,753	-		CCNA_03382	0.72	+1.0
3,554,760	+		CCNA_03382	0.72	-1.5
3,554,768	-		CCNA_03382	0.73	-1.1
3,554,791	-		CCNA_03382	0.75	-2.8
3,554,803	-		CCNA_03382	0.76	-0.5
3,554,819	-		CCNA_03382	0.77	-1.1
3,554,821	+		CCNA_03382	0.77	-0.3
3,554,821	+		CCNA_03382	0.77	+0.6
3,554,829	-		CCNA_03382	0.78	-0.4
3,554,829	-		CCNA_03382	0.78	-0.8
3,554,831	+		CCNA_03382	0.78	+0.5
3,554,894	-		CCNA_03382	0.83	-1.6
3,554,898	-		CCNA_03382	0.83	+0.4
3,554,898	-		CCNA_03382	0.83	+1.6
3,554,898	-		CCNA_03382	0.83	+0.4
3,554,920	-		CCNA_03382	0.85	-0.5
3,554,922	+		CCNA_03382	0.85	+1.9
3,554,930	-		CCNA_03382	0.85	-0.2
3,554,970	-		CCNA_03382	0.89	+2.0
3,554,992	+				-1.3
3,555,002	+				-0.4
3,555,007	+				+0.2
3,555,016	-				+1.1
3,555,065	+				+0.7
3,555,099	-				-1.8
3,555,114	+				+0.6
3,555,114	+				+1.8
3,555,124	+				+0.7
3,555,134	-				-0.7
3,555,134	-				-1.4
3,555,134	-				-1.7
3,555,134	-				-2.4
3,555,134	-				-1.5
3,555,134	-				-2.8
3,555,134	-				+0.2
3,555,161	+				-0.6
3,555,235	-				+1.2
3,555,248	+				-0.6
3,555,265	+				+0.6
3,555,307	-				+2.0
3,555,318	+				+1.8
3,555,318	+				+0.2
3,555,326	-				-0.3
3,555,331	+				-0.7
3,555,339	-				+0.6
3,555,345	-				+1.2
3,555,359	+				+0.2
3,555,359	+				-1.0
3,555,359	+				-0.5
3,555,367	-				-0.7
3,555,367	-				-0.8
3,555,367	-				+0.1
3,555,367	-				+0.4
3,555,367	-				-2.4
3,555,367	-				-0.2
3,555,372	-				+0.2
3,555,386	+				+2.0
3,555,387	+				-1.1
3,555,404	-				-0.3
3,555,416	+				-0.5
3,555,490	+		CCNA_03383	0.14	-0.2
3,555,531	-		CCNA_03383	0.16	-1.4
3,555,550	-		CCNA_03383	0.17	-0.5
3,555,554	+		CCNA_03383	0.17	+0.5
3,555,562	-		CCNA_03383	0.18	-2.9
3,555,562	-		CCNA_03383	0.18	-1.2
3,555,588	-		CCNA_03383	0.19	-1.0
3,555,588	-		CCNA_03383	0.19	+0.3
3,555,595	-		CCNA_03383	0.19	-0.2
3,555,616	+		CCNA_03383	0.21	-2.0
3,555,616	+		CCNA_03383	0.21	+1.0
3,555,651	+		CCNA_03383	0.22	-1.2
3,555,693	-		CCNA_03383	0.25	-1.5
3,555,715	+		CCNA_03383	0.26	+0.4
3,555,723	-		CCNA_03383	0.26	-1.2
3,555,771	+		CCNA_03383	0.29	-0.2
3,555,779	-		CCNA_03383	0.29	+1.8
3,555,779	-		CCNA_03383	0.29	+1.1
3,555,779	-		CCNA_03383	0.29	+0.6
3,555,779	-		CCNA_03383	0.29	+1.4
3,555,781	+		CCNA_03383	0.29	+0.2
3,555,781	+		CCNA_03383	0.29	-0.4
3,555,789	-		CCNA_03383	0.30	-0.9
3,555,789	-		CCNA_03383	0.30	+0.8
3,555,789	-		CCNA_03383	0.30	+0.1
3,555,789	-		CCNA_03383	0.30	+1.0
3,555,789	-		CCNA_03383	0.30	-0.1
3,555,789	-		CCNA_03383	0.30	-0.3
3,555,789	-		CCNA_03383	0.30	+1.0
3,555,789	-		CCNA_03383	0.30	+0.6
3,555,789	-		CCNA_03383	0.30	+0.9
3,555,791	-		CCNA_03383	0.30	+0.9
3,555,799	+		CCNA_03383	0.30	-0.2
3,555,804	+		CCNA_03383	0.31	-1.2
3,555,807	-		CCNA_03383	0.31	-2.6
3,555,812	-		CCNA_03383	0.31	+0.0
3,555,847	-		CCNA_03383	0.33	-0.7
3,555,847	-		CCNA_03383	0.33	-1.4
3,555,849	-		CCNA_03383	0.33	-0.4
3,555,849	-		CCNA_03383	0.33	+1.4
3,555,849	-		CCNA_03383	0.33	+1.0
3,555,865	+		CCNA_03383	0.34	-0.8
3,555,865	+		CCNA_03383	0.34	+0.0
3,555,900	+		CCNA_03383	0.36	-1.3
3,555,900	+		CCNA_03383	0.36	-0.7
3,555,900	+		CCNA_03383	0.36	-2.1
3,555,900	+		CCNA_03383	0.36	-1.0
3,555,900	+		CCNA_03383	0.36	+0.5
3,555,908	-		CCNA_03383	0.36	-1.4
3,555,908	-		CCNA_03383	0.36	-1.0
3,555,908	-		CCNA_03383	0.36	-2.0
3,555,908	-		CCNA_03383	0.36	-0.7
3,555,908	-		CCNA_03383	0.36	+0.0
3,555,908	-		CCNA_03383	0.36	-0.6
3,555,910	+		CCNA_03383	0.36	-1.2
3,555,910	+		CCNA_03383	0.36	-0.7
3,555,932	-		CCNA_03383	0.38	-0.0
3,555,943	+		CCNA_03383	0.38	-0.5
3,555,995	+		CCNA_03383	0.41	-0.6
3,555,995	+		CCNA_03383	0.41	-2.1
3,555,995	+		CCNA_03383	0.41	-0.2
3,555,995	+		CCNA_03383	0.41	-0.7
3,555,995	+		CCNA_03383	0.41	-2.6
3,555,995	+		CCNA_03383	0.41	-0.4
3,555,995	+		CCNA_03383	0.41	-0.4
3,555,995	+		CCNA_03383	0.41	+0.7
3,555,995	+		CCNA_03383	0.41	-0.8
3,556,003	-		CCNA_03383	0.41	-1.7
3,556,003	-		CCNA_03383	0.41	-1.5
3,556,003	-		CCNA_03383	0.41	-0.5
3,556,003	-		CCNA_03383	0.41	-0.2
3,556,003	-		CCNA_03383	0.41	-0.9
3,556,003	-		CCNA_03383	0.41	-0.3
3,556,003	-		CCNA_03383	0.41	-0.1
3,556,003	-		CCNA_03383	0.41	-0.2
3,556,003	-		CCNA_03383	0.41	-1.0
3,556,003	-		CCNA_03383	0.41	-1.8
3,556,003	-		CCNA_03383	0.41	-0.6
3,556,016	+		CCNA_03383	0.42	-0.5
3,556,024	-		CCNA_03383	0.43	+0.8
3,556,031	+		CCNA_03383	0.43	-0.4
3,556,049	-		CCNA_03383	0.44	+1.0
3,556,049	-		CCNA_03383	0.44	-0.4
3,556,056	-		CCNA_03383	0.44	-0.5
3,556,063	+		CCNA_03383	0.45	-1.6
3,556,063	+		CCNA_03383	0.45	+0.0
3,556,080	-		CCNA_03383	0.46	-1.5
3,556,080	-		CCNA_03383	0.46	-1.0
3,556,085	+		CCNA_03383	0.46	-2.2
3,556,092	-		CCNA_03383	0.46	-2.4
3,556,093	-		CCNA_03383	0.46	-0.1