Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03155

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
3,310,340	+		CCNA_03154	0.45	-1.4
3,310,348	-		CCNA_03154	0.46	+0.8
3,310,348	-		CCNA_03154	0.46	-1.6
3,310,355	+		CCNA_03154	0.46	-0.8
3,310,383	-		CCNA_03154	0.48	-1.7
3,310,421	+		CCNA_03154	0.51	+0.5
3,310,421	+		CCNA_03154	0.51	-0.2
3,310,434	-		CCNA_03154	0.52	-0.4
3,310,452	+		CCNA_03154	0.53	+0.2
3,310,455	-		CCNA_03154	0.53	-1.7
3,310,460	-		CCNA_03154	0.54	-0.0
3,310,469	+		CCNA_03154	0.54	-0.2
3,310,469	+		CCNA_03154	0.54	+1.6
3,310,469	+		CCNA_03154	0.54	-0.6
3,310,497	+		CCNA_03154	0.56	-2.3
3,310,572	+		CCNA_03154	0.61	-0.6
3,310,607	+		CCNA_03154	0.63	+0.4
3,310,628	+		CCNA_03154	0.65	+0.4
3,310,630	-		CCNA_03154	0.65	-1.0
3,310,630	-		CCNA_03154	0.65	-2.0
3,310,630	-		CCNA_03154	0.65	+0.4
3,310,630	-		CCNA_03154	0.65	+0.1
3,310,680	+		CCNA_03154	0.68	-0.6
3,310,688	-		CCNA_03154	0.69	-0.7
3,310,688	-		CCNA_03154	0.69	+0.1
3,310,688	-		CCNA_03154	0.69	-1.1
3,310,697	+		CCNA_03154	0.70	-0.4
3,310,734	+		CCNA_03154	0.72	-1.5
3,310,742	-		CCNA_03154	0.73	-0.7
3,310,766	+		CCNA_03154	0.74	-0.4
3,310,766	+		CCNA_03154	0.74	-0.3
3,310,771	+		CCNA_03154	0.74	+0.0
3,310,771	+		CCNA_03154	0.74	-0.3
3,310,774	-		CCNA_03154	0.75	-0.8
3,310,774	-		CCNA_03154	0.75	-2.0
3,310,774	-		CCNA_03154	0.75	-1.7
3,310,774	-		CCNA_03154	0.75	+0.1
3,310,774	-		CCNA_03154	0.75	+2.0
3,310,774	-		CCNA_03154	0.75	-1.2
3,310,804	-		CCNA_03154	0.77	-0.8
3,310,827	+		CCNA_03154	0.78	-0.7
3,310,852	-		CCNA_03154	0.80	-0.6
3,310,857	-		CCNA_03154	0.80	-1.1
3,310,859	-		CCNA_03154	0.80	+3.7
3,310,915	+		CCNA_03154	0.84	-1.5
3,310,934	-		CCNA_03154	0.85	-1.5
3,310,962	-		CCNA_03154	0.87	+0.5
3,310,990	+		CCNA_03154	0.89	-1.4
3,311,005	-				-1.6
3,311,040	-				-0.6
3,311,042	+				-1.9
3,311,050	-				-1.6
3,311,077	-				+1.5
3,311,077	-				+2.0
3,311,093	+				-0.7
3,311,106	+				-1.1
3,311,109	-				-1.2
3,311,168	+				-2.6
3,311,176	-				-0.9
3,311,176	-				-0.1
3,311,176	-				-1.8
3,311,176	-				-0.6
3,311,212	-				-1.0
3,311,274	+				-0.3
3,311,274	+				+0.5
3,311,287	-				+0.9
3,311,357	+				+1.1
3,311,373	+		CCNA_03155	0.12	+1.7
3,311,418	+		CCNA_03155	0.19	-0.5
3,311,418	+		CCNA_03155	0.19	+1.2
3,311,419	+		CCNA_03155	0.19	+1.5
3,311,426	-		CCNA_03155	0.20	-0.1
3,311,426	-		CCNA_03155	0.20	-0.8
3,311,431	-		CCNA_03155	0.21	+0.4
3,311,438	+		CCNA_03155	0.22	+1.9
3,311,438	+		CCNA_03155	0.22	+0.3
3,311,438	+		CCNA_03155	0.22	+1.1
3,311,446	-		CCNA_03155	0.23	+0.8
3,311,450	+		CCNA_03155	0.24	+1.6
3,311,457	+		CCNA_03155	0.25	+1.4
3,311,457	-		CCNA_03155	0.25	-0.2
3,311,482	+		CCNA_03155	0.29	+1.7
3,311,489	+		CCNA_03155	0.30	+0.8
3,311,512	+		CCNA_03155	0.34	+1.9
3,311,512	-		CCNA_03155	0.34	-0.8
3,311,512	-		CCNA_03155	0.34	-1.1
3,311,519	-		CCNA_03155	0.35	+1.2
3,311,520	-		CCNA_03155	0.35	+0.5
3,311,520	-		CCNA_03155	0.35	+0.1
3,311,522	+		CCNA_03155	0.36	+1.3
3,311,554	-		CCNA_03155	0.41	+2.0
3,311,568	+		CCNA_03155	0.43	+2.2
3,311,571	+		CCNA_03155	0.43	+1.5
3,311,618	+		CCNA_03155	0.51	+1.3
3,311,618	+		CCNA_03155	0.51	+1.0
3,311,628	+		CCNA_03155	0.52	+1.0
3,311,633	+		CCNA_03155	0.53	+1.0
3,311,743	-		CCNA_03155	0.71	+0.6
3,311,760	+		CCNA_03155	0.73	+1.7
3,311,760	+		CCNA_03155	0.73	+1.2
3,311,760	+		CCNA_03155	0.73	+1.6
3,311,760	+		CCNA_03155	0.73	+1.3
3,311,760	+		CCNA_03155	0.73	+2.2
3,311,760	+		CCNA_03155	0.73	+1.5
3,311,760	+		CCNA_03155	0.73	+1.5
3,311,768	-		CCNA_03155	0.75	-1.6
3,311,768	-		CCNA_03155	0.75	-1.1
3,311,768	-		CCNA_03155	0.75	-1.2
3,311,775	+		CCNA_03155	0.76	+2.7
3,311,804	-		CCNA_03155	0.80	-0.3
3,311,817	+		CCNA_03155	0.82	+1.7
3,311,817	+		CCNA_03155	0.82	+1.6
3,311,875	+				+1.3
3,311,879	+				+1.1
3,311,883	-				-0.7
3,311,887	-				-0.9
3,311,887	-				-0.0
3,311,908	-				+1.6
3,311,929	-				-1.4
3,311,959	-				-0.5
3,311,964	-				-0.6
3,312,006	+		CCNA_03156	0.13	+1.2
3,312,006	+		CCNA_03156	0.13	+1.0
3,312,013	-		CCNA_03156	0.15	+0.2
3,312,014	-		CCNA_03156	0.15	+0.4
3,312,036	+		CCNA_03156	0.19	+1.8
3,312,126	-		CCNA_03156	0.36	-1.4
3,312,159	-		CCNA_03156	0.43	-2.3
3,312,183	-				+0.8
3,312,186	+		CCNA_03156	0.48	+2.0
3,312,225	+		CCNA_03156	0.56	+1.2
3,312,297	+		CCNA_03156	0.70	+2.3
3,312,297	+		CCNA_03156	0.70	+1.1
3,312,308	+		CCNA_03156	0.72	+2.0
3,312,310	+		CCNA_03156	0.72	+1.3
3,312,318	-		CCNA_03156	0.74	-0.4
3,312,318	-		CCNA_03156	0.74	-0.0
3,312,376	+		CCNA_03156	0.85	+1.7
3,312,381	+		CCNA_03156	0.86	+0.7
3,312,419	-				-0.2
3,312,431	-				-1.1
3,312,439	-				-0.5
3,312,458	+				+0.9
3,312,459	+				+1.0
3,312,466	+				+1.6
3,312,467	-				-1.2
3,312,502	+				+2.3
3,312,507	+				+1.5
3,312,515	-				+1.4
3,312,542	+		CCNA_03157	0.10	+0.8
3,312,550	-		CCNA_03157	0.11	+2.2
3,312,560	-		CCNA_03157	0.12	-0.0
3,312,583	+		CCNA_03157	0.15	+0.4
3,312,623	+		CCNA_03157	0.20	+1.0
3,312,623	+		CCNA_03157	0.20	+1.1
3,312,623	+		CCNA_03157	0.20	+0.6
3,312,623	+		CCNA_03157	0.20	+1.2
3,312,623	+		CCNA_03157	0.20	+0.4
3,312,623	+		CCNA_03157	0.20	+0.9
3,312,623	+		CCNA_03157	0.20	-1.4
3,312,626	-		CCNA_03157	0.20	-0.2
3,312,631	-		CCNA_03157	0.20	-0.6
3,312,631	-		CCNA_03157	0.20	-0.3
3,312,631	-		CCNA_03157	0.20	-0.2
3,312,631	-		CCNA_03157	0.20	-0.0
3,312,631	-		CCNA_03157	0.20	-1.5
3,312,631	-		CCNA_03157	0.20	-1.9
3,312,631	-		CCNA_03157	0.20	-0.4
3,312,666	-		CCNA_03157	0.24	-0.7
3,312,668	-		CCNA_03157	0.25	-2.1
3,312,714	+		CCNA_03157	0.30	+0.8
3,312,714	+		CCNA_03157	0.30	+1.4
3,312,714	+		CCNA_03157	0.30	+2.2
3,312,714	+		CCNA_03157	0.30	+0.8
3,312,714	+		CCNA_03157	0.30	+1.6
3,312,722	-		CCNA_03157	0.31	-0.0
3,312,722	-		CCNA_03157	0.31	-1.5
3,312,722	-		CCNA_03157	0.31	+0.1
3,312,722	-		CCNA_03157	0.31	-1.9
3,312,722	-		CCNA_03157	0.31	-0.6
3,312,722	-		CCNA_03157	0.31	-3.1
3,312,722	-		CCNA_03157	0.31	-0.8
3,312,722	-		CCNA_03157	0.31	-1.8
3,312,722	-		CCNA_03157	0.31	-1.0
3,312,760	+		CCNA_03157	0.35	+1.5
3,312,777	+		CCNA_03157	0.37	+1.1
3,312,804	+		CCNA_03157	0.40	+1.2
3,312,818	+		CCNA_03157	0.42	+1.4
3,312,840	+		CCNA_03157	0.44	+1.3
3,312,840	+		CCNA_03157	0.44	+0.3
3,312,848	-		CCNA_03157	0.45	+0.4
3,312,881	+		CCNA_03157	0.49	+0.8
3,312,881	+		CCNA_03157	0.49	+1.5