Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03147

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
3,299,895	-		CCNA_03146	0.54	+1.3
3,299,900	-		CCNA_03146	0.54	-0.8
3,299,916	+		CCNA_03146	0.55	+0.0
3,299,916	+		CCNA_03146	0.55	-1.8
3,299,921	+		CCNA_03146	0.55	-0.1
3,299,940	-		CCNA_03146	0.56	-0.3
3,299,943	+		CCNA_03146	0.56	-0.6
3,299,945	-		CCNA_03146	0.56	-0.2
3,299,948	+		CCNA_03146	0.57	+1.1
3,299,948	+		CCNA_03146	0.57	-1.7
3,299,956	+		CCNA_03146	0.57	+0.9
3,299,956	-		CCNA_03146	0.57	-1.0
3,299,994	-		CCNA_03146	0.59	+2.1
3,300,008	+		CCNA_03146	0.60	+1.9
3,300,008	-		CCNA_03146	0.60	-1.5
3,300,016	-		CCNA_03146	0.60	+0.8
3,300,030	+		CCNA_03146	0.61	+0.1
3,300,038	-		CCNA_03146	0.61	-0.7
3,300,038	-		CCNA_03146	0.61	-1.1
3,300,066	+		CCNA_03146	0.63	-0.2
3,300,066	+		CCNA_03146	0.63	+0.2
3,300,066	+		CCNA_03146	0.63	-0.4
3,300,066	+		CCNA_03146	0.63	+0.8
3,300,066	+		CCNA_03146	0.63	+1.3
3,300,066	+		CCNA_03146	0.63	+0.6
3,300,074	-		CCNA_03146	0.63	-1.1
3,300,074	-		CCNA_03146	0.63	-0.7
3,300,074	-		CCNA_03146	0.63	-2.9
3,300,074	-		CCNA_03146	0.63	+0.4
3,300,074	-		CCNA_03146	0.63	+0.6
3,300,074	-		CCNA_03146	0.63	-0.2
3,300,074	-		CCNA_03146	0.63	+0.6
3,300,074	-		CCNA_03146	0.63	+1.3
3,300,074	-		CCNA_03146	0.63	-0.3
3,300,074	-				+0.8
3,300,079	-		CCNA_03146	0.63	+0.8
3,300,113	+		CCNA_03146	0.65	+0.6
3,300,134	-		CCNA_03146	0.66	+1.0
3,300,143	+		CCNA_03146	0.66	-0.3
3,300,144	-		CCNA_03146	0.67	-1.4
3,300,245	-		CCNA_03146	0.72	+1.1
3,300,258	+		CCNA_03146	0.72	+0.1
3,300,265	-		CCNA_03146	0.73	-1.4
3,300,270	-		CCNA_03146	0.73	-1.5
3,300,270	-		CCNA_03146	0.73	-0.2
3,300,278	-		CCNA_03146	0.73	-1.9
3,300,303	+		CCNA_03146	0.75	+2.0
3,300,311	-		CCNA_03146	0.75	-2.4
3,300,311	-		CCNA_03146	0.75	-0.9
3,300,311	-		CCNA_03146	0.75	-0.7
3,300,311	-		CCNA_03146	0.75	-0.2
3,300,311	-		CCNA_03146	0.75	+0.6
3,300,321	+		CCNA_03146	0.76	-0.7
3,300,321	+		CCNA_03146	0.76	+0.4
3,300,329	-		CCNA_03146	0.76	-1.0
3,300,329	-		CCNA_03146	0.76	+0.3
3,300,329	-		CCNA_03146	0.76	-0.5
3,300,341	+		CCNA_03146	0.77	-1.8
3,300,355	+		CCNA_03146	0.77	-0.2
3,300,362	+		CCNA_03146	0.78	+1.0
3,300,362	+		CCNA_03146	0.78	-1.3
3,300,370	-				+3.0
3,300,375	-		CCNA_03146	0.78	-0.3
3,300,375	-		CCNA_03146	0.78	-0.1
3,300,387	+		CCNA_03146	0.79	-0.1
3,300,413	+		CCNA_03146	0.80	-0.8
3,300,413	+		CCNA_03146	0.80	-0.9
3,300,413	+		CCNA_03146	0.80	-0.7
3,300,413	+		CCNA_03146	0.80	-1.1
3,300,413	+		CCNA_03146	0.80	-1.6
3,300,413	+		CCNA_03146	0.80	-0.1
3,300,413	+		CCNA_03146	0.80	+0.9
3,300,413	+		CCNA_03146	0.80	+0.5
3,300,413	+		CCNA_03146	0.80	-0.9
3,300,413	+		CCNA_03146	0.80	-0.6
3,300,413	+		CCNA_03146	0.80	-2.1
3,300,413	+		CCNA_03146	0.80	+0.7
3,300,421	-		CCNA_03146	0.81	+0.9
3,300,421	-		CCNA_03146	0.81	+0.5
3,300,421	-		CCNA_03146	0.81	-0.6
3,300,421	-		CCNA_03146	0.81	+0.8
3,300,421	-		CCNA_03146	0.81	+0.0
3,300,425	+		CCNA_03146	0.81	+1.2
3,300,440	+		CCNA_03146	0.82	-0.7
3,300,450	+		CCNA_03146	0.82	+0.3
3,300,458	-		CCNA_03146	0.83	-0.9
3,300,474	+		CCNA_03146	0.83	-0.1
3,300,474	+		CCNA_03146	0.83	+0.2
3,300,474	+		CCNA_03146	0.83	+1.2
3,300,474	+		CCNA_03146	0.83	+0.3
3,300,474	+		CCNA_03146	0.83	+0.1
3,300,474	+		CCNA_03146	0.83	+1.0
3,300,474	+		CCNA_03146	0.83	+0.6
3,300,474	+		CCNA_03146	0.83	+1.2
3,300,477	-		CCNA_03146	0.83	+0.1
3,300,479	+		CCNA_03146	0.84	+1.4
3,300,482	-		CCNA_03146	0.84	-0.3
3,300,482	-		CCNA_03146	0.84	-0.5
3,300,482	-		CCNA_03146	0.84	-3.4
3,300,482	-		CCNA_03146	0.84	-1.0
3,300,482	-		CCNA_03146	0.84	-0.2
3,300,482	-		CCNA_03146	0.84	-2.0
3,300,512	-		CCNA_03146	0.85	+2.6
3,300,513	-		CCNA_03146	0.85	-2.5
3,300,548	+		CCNA_03146	0.87	+0.4
3,300,556	-		CCNA_03146	0.88	+0.6
3,300,559	+		CCNA_03146	0.88	-0.3
3,300,577	+		CCNA_03146	0.89	-0.2
3,300,600	+		CCNA_03146	0.90	+0.2
3,300,600	+		CCNA_03146	0.90	-0.5
3,300,600	+		CCNA_03146	0.90	-0.5
3,300,608	-				-1.4
3,300,608	-				-1.9
3,300,608	-				-1.7
3,300,610	-				+0.8
3,300,625	-				-1.1
3,300,625	-				-1.7
3,300,674	+				+0.1
3,300,701	+				-0.6
3,300,706	+				+1.2
3,300,728	+				+0.8
3,300,789	-				-0.0
3,300,796	+				+0.9
3,300,804	-				-0.7
3,300,804	-				-1.1
3,300,839	+				+0.2
3,300,859	-				-0.9
3,300,861	-				+1.6
3,300,884	-				-0.4
3,300,886	+				+0.9
3,300,888	+				+0.2
3,300,903	+				+1.1
3,300,908	+				+0.2
3,300,911	-				-1.5
3,300,927	-				-1.3
3,300,928	+				-0.9
3,300,928	+				-0.6
3,300,936	-				-2.4
3,300,938	-				+0.6
3,300,987	+		CCNA_03147	0.16	-0.4
3,300,991	+		CCNA_03147	0.16	+0.1
3,300,992	+		CCNA_03147	0.16	-2.4
3,300,995	-		CCNA_03147	0.17	-2.3
3,301,000	-		CCNA_03147	0.18	+0.1
3,301,000	-		CCNA_03147	0.18	+0.6
3,301,000	-		CCNA_03147	0.18	-2.0
3,301,000	-		CCNA_03147	0.18	+1.4
3,301,000	-		CCNA_03147	0.18	-0.0
3,301,005	-		CCNA_03147	0.18	-0.6
3,301,033	-		CCNA_03147	0.23	-0.2
3,301,063	+		CCNA_03147	0.28	-0.7
3,301,063	+		CCNA_03147	0.28	-1.3
3,301,063	+		CCNA_03147	0.28	-2.8
3,301,063	+		CCNA_03147	0.28	-2.0
3,301,144	-		CCNA_03147	0.40	-1.1
3,301,144	-		CCNA_03147	0.40	-0.8
3,301,168	+		CCNA_03147	0.44	-0.1
3,301,191	-		CCNA_03147	0.48	-0.1
3,301,209	+		CCNA_03147	0.51	-1.5
3,301,212	-		CCNA_03147	0.51	+0.4
3,301,242	-		CCNA_03147	0.56	-0.5
3,301,248	+		CCNA_03147	0.57	+0.3
3,301,309	-		CCNA_03147	0.67	+0.1
3,301,325	+		CCNA_03147	0.69	-1.1
3,301,330	+		CCNA_03147	0.70	-0.1
3,301,346	+		CCNA_03147	0.73	-0.6
3,301,348	+		CCNA_03147	0.73	-0.6
3,301,348	+		CCNA_03147	0.73	-0.4
3,301,348	+		CCNA_03147	0.73	-0.3
3,301,348	+		CCNA_03147	0.73	+0.1
3,301,348	+		CCNA_03147	0.73	-2.5
3,301,351	-		CCNA_03147	0.73	+0.3
3,301,351	-		CCNA_03147	0.73	-1.1
3,301,356	-		CCNA_03147	0.74	-2.8
3,301,356	-		CCNA_03147	0.74	-1.1
3,301,356	-		CCNA_03147	0.74	-0.3
3,301,385	-		CCNA_03147	0.79	-3.0
3,301,401	+		CCNA_03147	0.81	-1.9
3,301,422	+		CCNA_03147	0.85	-0.2
3,301,429	+		CCNA_03147	0.86	-0.7
3,301,449	+		CCNA_03147	0.89	-0.4
3,301,449	+		CCNA_03147	0.89	-1.9
3,301,449	+		CCNA_03147	0.89	-0.9
3,301,457	-				-0.5
3,301,457	-				+2.0
3,301,457	-				-2.6
3,301,457	-				-0.2
3,301,457	-				-0.6
3,301,457	-				-1.0
3,301,457	-				-1.7
3,301,462	-				+0.3
3,301,507	+				-1.7
3,301,507	+				-1.0
3,301,507	+				-2.3
3,301,507	+				-0.5
3,301,507	+				-0.3
3,301,507	+				-1.1
3,301,507	+				-0.0
3,301,507	+				-1.1
3,301,507	+				-1.6
3,301,507	+				-1.1
3,301,507	+				+0.8
3,301,507	+				-1.0
3,301,512	+				-1.8
3,301,515	-				+0.6
3,301,515	-				-0.5
3,301,515	-				-0.6
3,301,515	-				-0.2
3,301,515	-				-0.2
3,301,515	-				-0.4
3,301,515	-				-1.6
3,301,515	-				+0.8
3,301,515	-				-1.7
3,301,517	+				+0.1
3,301,520	-				-0.9
3,301,525	-				-1.8
3,301,540	+				-0.7
3,301,541	+				-1.6
3,301,541	+				-1.7
3,301,541	+				-0.8
3,301,546	+				-0.9
3,301,548	-				-1.3
3,301,554	-				+0.3
3,301,606	+				+0.8
3,301,619	+				+0.8
3,301,623	+				-0.6
3,301,647	+				-1.1
3,301,664	+				-2.1
3,301,672	-				-0.6
3,301,716	+				-0.1
3,301,730	-				-0.2
3,301,730	-				-2.6
3,301,730	-				-1.5
3,301,734	+				-0.7
3,301,756	+				+0.1
3,301,769	+				-0.6
3,301,769	+				-0.0
3,301,769	+				+0.6
3,301,769	+				-0.9
3,301,769	+				-0.8
3,301,770	-				-0.1
3,301,777	-				+0.1
3,301,777	-				+1.0
3,301,777	-				-1.0
3,301,777	-				+1.0
3,301,777	-				-2.1
3,301,779	+				-1.6
3,301,789	-				-2.1
3,301,789	-				-1.1
3,301,789	-				-1.6
3,301,792	+				+0.4
3,301,795	-				-0.5
3,301,850	+		CCNA_03148	0.13	-0.1
3,301,850	+		CCNA_03148	0.13	+0.5
3,301,889	+		CCNA_03148	0.15	-0.5
3,301,892	-		CCNA_03148	0.15	-1.1
3,301,907	-		CCNA_03148	0.16	-1.7
3,301,959	+		CCNA_03148	0.19	-1.5
3,301,959	+		CCNA_03148	0.19	-0.8
3,302,005	-		CCNA_03148	0.21	-0.9
3,302,018	+		CCNA_03148	0.22	-0.2
3,302,026	-		CCNA_03148	0.23	+0.6
3,302,034	+		CCNA_03148	0.23	+0.3
3,302,034	+		CCNA_03148	0.23	-1.0
3,302,051	+		CCNA_03148	0.24	-0.8
3,302,056	+		CCNA_03148	0.24	-0.1
3,302,063	+		CCNA_03148	0.25	-0.3
3,302,121	-		CCNA_03148	0.28	-1.4
3,302,124	+		CCNA_03148	0.28	+0.4
3,302,130	+		CCNA_03148	0.28	-0.6
3,302,132	-		CCNA_03148	0.28	+0.1
3,302,133	-		CCNA_03148	0.29	-0.2
3,302,143	+		CCNA_03148	0.29	-0.6
3,302,148	+		CCNA_03148	0.29	-0.8
3,302,181	+		CCNA_03148	0.31	-0.9
3,302,196	-		CCNA_03148	0.32	+0.1
3,302,196	-		CCNA_03148	0.32	+0.2
3,302,201	-		CCNA_03148	0.32	+1.1
3,302,220	+		CCNA_03148	0.33	+0.1
3,302,232	+		CCNA_03148	0.34	-1.6
3,302,249	-		CCNA_03148	0.35	-0.9
3,302,249	-		CCNA_03148	0.35	+3.6
3,302,249	-		CCNA_03148	0.35	-2.1
3,302,265	-		CCNA_03148	0.36	-0.2
3,302,269	+		CCNA_03148	0.36	-1.0
3,302,301	+		CCNA_03148	0.38	-0.0
3,302,309	-		CCNA_03148	0.38	+1.1
3,302,309	-		CCNA_03148	0.38	-1.0
3,302,309	-		CCNA_03148	0.38	+0.2
3,302,321	-		CCNA_03148	0.39	-0.7
3,302,338	-		CCNA_03148	0.40	-1.0
3,302,359	+		CCNA_03148	0.41	-0.7
3,302,359	+		CCNA_03148	0.41	-0.2
3,302,367	-		CCNA_03148	0.42	-0.4
3,302,367	-		CCNA_03148	0.42	-1.3
3,302,367	-		CCNA_03148	0.42	+1.1
3,302,397	+		CCNA_03148	0.43	-0.1
3,302,397	+		CCNA_03148	0.43	-1.0
3,302,397	+		CCNA_03148	0.43	+0.4
3,302,404	+		CCNA_03148	0.44	-1.0
3,302,405	-		CCNA_03148	0.44	-2.0
3,302,427	-		CCNA_03148	0.45	-0.2
3,302,448	+		CCNA_03148	0.46	-1.1
3,302,456	-		CCNA_03148	0.47	-1.5
3,302,463	+		CCNA_03148	0.47	-0.7
3,302,463	+		CCNA_03148	0.47	-0.8
3,302,466	-		CCNA_03148	0.47	-0.8
3,302,471	-		CCNA_03148	0.47	+0.1
3,302,492	+		CCNA_03148	0.49	+1.2
3,302,502	+		CCNA_03148	0.49	-1.1
3,302,510	-		CCNA_03148	0.50	-1.0