Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03134

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
3,280,770	-		CCNA_03131	0.88	-0.0
3,280,841	-				-0.4
3,280,844	+				-1.2
3,280,852	-				-0.2
3,280,875	-				+0.3
3,280,882	-				-0.2
3,280,913	-				+1.3
3,280,914	-				+0.5
3,280,947	-		CCNA_03132	0.12	+0.8
3,280,950	-		CCNA_03132	0.13	+1.2
3,280,957	+		CCNA_03132	0.15	-0.1
3,280,970	-		CCNA_03132	0.19	+1.5
3,280,994	-		CCNA_03132	0.26	+2.5
3,280,995	-		CCNA_03132	0.27	+2.1
3,281,044	+		CCNA_03132	0.42	-2.1
3,281,061	+		CCNA_03132	0.47	+1.1
3,281,061	+		CCNA_03132	0.47	+0.6
3,281,069	-		CCNA_03132	0.49	+2.4
3,281,069	-		CCNA_03132	0.49	+2.3
3,281,087	+		CCNA_03132	0.55	-0.1
3,281,095	+		CCNA_03132	0.57	+0.8
3,281,103	-		CCNA_03132	0.60	+1.7
3,281,103	-		CCNA_03132	0.60	+1.6
3,281,103	-		CCNA_03132	0.60	+1.8
3,281,122	-		CCNA_03132	0.65	+1.3
3,281,199	+		CCNA_03132	0.89	-0.2
3,281,241	-				+0.5
3,281,248	+				-0.8
3,281,251	-				-0.3
3,281,253	+				-1.7
3,281,286	-		CCNA_03133	0.20	-0.1
3,281,288	+		CCNA_03133	0.20	-0.1
3,281,303	+		CCNA_03133	0.25	-0.7
3,281,303	+		CCNA_03133	0.25	-0.7
3,281,311	-		CCNA_03133	0.28	-1.4
3,281,315	+		CCNA_03133	0.29	-2.1
3,281,323	-		CCNA_03133	0.32	-0.6
3,281,328	-		CCNA_03133	0.34	+0.4
3,281,385	+		CCNA_03133	0.53	-1.4
3,281,385	+		CCNA_03133	0.53	+0.3
3,281,387	+		CCNA_03133	0.54	-0.8
3,281,394	+		CCNA_03133	0.56	-1.1
3,281,427	+		CCNA_03133	0.67	-0.3
3,281,432	+		CCNA_03133	0.69	+0.8
3,281,437	+		CCNA_03133	0.70	+0.0
3,281,462	-		CCNA_03133	0.79	-0.1
3,281,477	-		CCNA_03133	0.84	+2.0
3,281,490	+		CCNA_03133	0.88	-0.8
3,281,490	+		CCNA_03133	0.88	+1.3
3,281,490	+		CCNA_03133	0.88	-1.7
3,281,491	+		CCNA_03133	0.89	-0.5
3,281,498	-				-0.6
3,281,498	-				+0.0
3,281,567	+				-0.4
3,281,567	+				-0.7
3,281,622	+				+0.0
3,281,622	+				-1.1
3,281,622	+				-0.1
3,281,622	+				-0.9
3,281,630	-				-0.3
3,281,630	-				-0.7
3,281,630	-				-1.9
3,281,630	-				-1.4
3,281,630	-				-0.5
3,281,635	-				-1.0
3,281,649	+				-0.7
3,281,727	-				-0.4
3,281,742	+				-0.4
3,281,831	+				+2.0
3,281,842	+				-0.3
3,281,899	+		CCNA_03134	0.15	-1.3
3,281,946	+		CCNA_03134	0.20	-1.6
3,282,013	-		CCNA_03134	0.27	-1.5
3,282,019	+		CCNA_03134	0.27	-1.3
3,282,029	+		CCNA_03134	0.28	-0.6
3,282,029	+		CCNA_03134	0.28	+0.4
3,282,029	+		CCNA_03134	0.28	-1.9
3,282,029	+		CCNA_03134	0.28	-0.1
3,282,029	+		CCNA_03134	0.28	+1.3
3,282,029	+		CCNA_03134	0.28	+0.4
3,282,030	+		CCNA_03134	0.28	-0.2
3,282,037	-		CCNA_03134	0.29	-1.1
3,282,037	-		CCNA_03134	0.29	-0.3
3,282,037	-		CCNA_03134	0.29	-0.2
3,282,037	-		CCNA_03134	0.29	-0.3
3,282,037	-		CCNA_03134	0.29	-1.6
3,282,048	-		CCNA_03134	0.30	-0.3
3,282,065	+		CCNA_03134	0.32	+0.3
3,282,066	+		CCNA_03134	0.32	-1.7
3,282,069	+		CCNA_03134	0.32	-0.1
3,282,090	+		CCNA_03134	0.34	-0.6
3,282,095	+		CCNA_03134	0.35	-1.2
3,282,095	+		CCNA_03134	0.35	+1.0
3,282,095	+		CCNA_03134	0.35	-1.5
3,282,095	+		CCNA_03134	0.35	-1.1
3,282,095	+		CCNA_03134	0.35	+0.3
3,282,103	-		CCNA_03134	0.36	-0.2
3,282,103	-		CCNA_03134	0.36	+0.5
3,282,103	-		CCNA_03134	0.36	-0.6
3,282,103	-		CCNA_03134	0.36	-0.5
3,282,103	-		CCNA_03134	0.36	-1.2
3,282,116	-		CCNA_03134	0.37	-1.7
3,282,121	-		CCNA_03134	0.37	-0.7
3,282,181	+		CCNA_03134	0.43	-0.9
3,282,186	+		CCNA_03134	0.44	-0.3
3,282,189	-		CCNA_03134	0.44	-0.7
3,282,194	-		CCNA_03134	0.45	+0.2
3,282,194	-		CCNA_03134	0.45	-1.6
3,282,194	-		CCNA_03134	0.45	-1.5
3,282,204	-		CCNA_03134	0.46	+0.7
3,282,247	-		CCNA_03134	0.50	+0.9
3,282,276	-		CCNA_03134	0.53	-2.6
3,282,279	+		CCNA_03134	0.53	-0.2
3,282,279	+		CCNA_03134	0.53	-0.6
3,282,287	-		CCNA_03134	0.54	-1.9
3,282,291	+		CCNA_03134	0.54	+0.3
3,282,291	+		CCNA_03134	0.54	-2.1
3,282,299	-		CCNA_03134	0.55	-0.7
3,282,299	-		CCNA_03134	0.55	-0.1
3,282,301	-		CCNA_03134	0.55	+0.5
3,282,329	+		CCNA_03134	0.58	-0.3
3,282,352	+		CCNA_03134	0.60	+1.3
3,282,393	-		CCNA_03134	0.64	-1.4
3,282,413	+		CCNA_03134	0.66	-1.7
3,282,419	+		CCNA_03134	0.67	-1.5
3,282,488	+		CCNA_03134	0.74	+0.3
3,282,496	-		CCNA_03134	0.75	-0.1
3,282,497	-		CCNA_03134	0.75	-0.8
3,282,503	+		CCNA_03134	0.75	-0.4
3,282,510	+		CCNA_03134	0.76	+0.3
3,282,516	-		CCNA_03134	0.77	-0.7
3,282,516	-		CCNA_03134	0.77	-2.5
3,282,522	-		CCNA_03134	0.77	-0.2
3,282,543	-		CCNA_03134	0.79	+0.4
3,282,543	-		CCNA_03134	0.79	+0.3
3,282,553	+		CCNA_03134	0.80	-0.6
3,282,556	-		CCNA_03134	0.81	+0.0
3,282,578	-		CCNA_03134	0.83	-1.4
3,282,598	-		CCNA_03134	0.85	-1.4
3,282,600	+		CCNA_03134	0.85	-0.2
3,282,603	+		CCNA_03134	0.85	-1.8
3,282,611	-		CCNA_03134	0.86	-1.5
3,282,611	-		CCNA_03134	0.86	+0.3
3,282,611	-		CCNA_03134	0.86	-1.2
3,282,659	-				+1.9
3,282,685	+				-0.6
3,282,687	-				+0.6
3,282,712	+				-2.9
3,282,720	-				-0.7
3,282,737	+				-0.2
3,282,737	+				-1.3
3,282,745	-				-1.7
3,282,752	+				+0.6
3,282,781	+				+1.4
3,282,789	-				-0.8
3,282,804	+				+0.3
3,282,807	+				+0.5
3,282,807	+				+1.0
3,282,815	-				-0.2
3,282,906	+				+0.8
3,282,906	+				+1.2
3,282,914	-				-2.1
3,282,935	+				+0.1
3,282,935	+				+0.5
3,282,943	-				-0.1
3,282,943	-				-0.2
3,282,978	+		CCNA_03135	0.13	+0.3
3,283,007	+		CCNA_03135	0.15	+1.0
3,283,007	+		CCNA_03135	0.15	-0.3
3,283,007	+		CCNA_03135	0.15	+0.8
3,283,007	+		CCNA_03135	0.15	+0.2
3,283,007	+		CCNA_03135	0.15	+1.6
3,283,007	+		CCNA_03135	0.15	+0.2
3,283,015	-		CCNA_03135	0.15	+0.0
3,283,015	-		CCNA_03135	0.15	+0.1
3,283,016	+		CCNA_03135	0.15	+0.1
3,283,052	+		CCNA_03135	0.18	+0.7
3,283,060	-		CCNA_03135	0.19	-0.7
3,283,060	-		CCNA_03135	0.19	-1.1
3,283,111	+		CCNA_03135	0.23	-0.9
3,283,147	+		CCNA_03135	0.25	+1.2
3,283,160	+		CCNA_03135	0.26	+2.4
3,283,160	+		CCNA_03135	0.26	-0.2
3,283,175	-		CCNA_03135	0.27	-0.2
3,283,228	+		CCNA_03135	0.31	-0.4
3,283,236	-		CCNA_03135	0.32	-1.0
3,283,236	-		CCNA_03135	0.32	+0.3
3,283,240	-		CCNA_03135	0.32	+0.1
3,283,291	-		CCNA_03135	0.36	-0.3
3,283,328	+		CCNA_03135	0.39	+0.7
3,283,340	+		CCNA_03135	0.40	-1.3
3,283,340	+		CCNA_03135	0.40	-0.5
3,283,340	+		CCNA_03135	0.40	+0.3
3,283,343	-		CCNA_03135	0.40	+0.0
3,283,348	-		CCNA_03135	0.40	+0.1
3,283,348	-		CCNA_03135	0.40	-1.4
3,283,391	+		CCNA_03135	0.44	-0.9
3,283,427	+		CCNA_03135	0.46	+0.3
3,283,437	+		CCNA_03135	0.47	-0.1
3,283,437	+		CCNA_03135	0.47	-0.6
3,283,440	-		CCNA_03135	0.47	+0.0
3,283,445	-		CCNA_03135	0.48	+0.8
3,283,482	+		CCNA_03135	0.50	+0.9
3,283,482	+		CCNA_03135	0.50	-1.3
3,283,511	-		CCNA_03135	0.53	-0.1
3,283,512	+		CCNA_03135	0.53	+0.1
3,283,544	+		CCNA_03135	0.55	-2.2
3,283,544	+		CCNA_03135	0.55	-0.1
3,283,544	+		CCNA_03135	0.55	+1.3
3,283,562	-		CCNA_03135	0.56	+0.0
3,283,588	+		CCNA_03135	0.58	-0.6
3,283,598	+		CCNA_03135	0.59	+1.0
3,283,640	+		CCNA_03135	0.62	+0.8
3,283,643	+		CCNA_03135	0.62	-1.6
3,283,648	-		CCNA_03135	0.63	-1.1
3,283,670	+		CCNA_03135	0.64	-0.4
3,283,682	+		CCNA_03135	0.65	-0.8
3,283,685	-		CCNA_03135	0.66	-1.5
3,283,740	+		CCNA_03135	0.70	-0.7
3,283,740	+		CCNA_03135	0.70	+0.3
3,283,747	+		CCNA_03135	0.70	-0.6
3,283,750	-		CCNA_03135	0.70	-1.3