Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03115

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
3,263,796	+				+1.8
3,263,804	-				-1.3
3,263,812	-				-0.4
3,263,838	+				+0.0
3,263,846	-				-0.8
3,263,846	-				-0.1
3,263,848	+				-1.5
3,263,851	-				-1.5
3,263,856	-		CCNA_03113	0.11	+0.3
3,263,866	-		CCNA_03113	0.12	-0.2
3,263,884	+		CCNA_03113	0.14	-0.5
3,263,892	-		CCNA_03113	0.16	+0.0
3,263,925	+		CCNA_03113	0.20	+1.0
3,263,928	-		CCNA_03113	0.21	+0.9
3,263,955	+		CCNA_03113	0.24	+0.3
3,263,969	+		CCNA_03113	0.26	-1.1
3,264,010	+		CCNA_03113	0.32	-0.1
3,264,011	+		CCNA_03113	0.32	+1.0
3,264,016	+		CCNA_03113	0.33	-0.8
3,264,026	-		CCNA_03113	0.34	+1.5
3,264,068	-		CCNA_03113	0.40	-0.4
3,264,097	+		CCNA_03113	0.44	-0.6
3,264,101	-		CCNA_03113	0.45	-0.4
3,264,113	+		CCNA_03113	0.46	-0.8
3,264,142	+		CCNA_03113	0.50	-1.2
3,264,144	-		CCNA_03113	0.51	+0.9
3,264,144	-				+1.0
3,264,150	-		CCNA_03113	0.51	+0.2
3,264,150	-				+3.6
3,264,179	+		CCNA_03113	0.55	-0.7
3,264,186	+		CCNA_03113	0.56	+0.0
3,264,209	-		CCNA_03113	0.60	+0.6
3,264,244	-		CCNA_03113	0.64	+0.9
3,264,244	-		CCNA_03113	0.64	-1.2
3,264,244	-		CCNA_03113	0.64	+0.7
3,264,254	+		CCNA_03113	0.66	-0.8
3,264,254	+		CCNA_03113	0.66	+0.3
3,264,254	+		CCNA_03113	0.66	+0.9
3,264,262	-		CCNA_03113	0.67	+0.6
3,264,266	+		CCNA_03113	0.68	+0.6
3,264,297	+		CCNA_03113	0.72	+0.3
3,264,300	-		CCNA_03113	0.72	+1.6
3,264,300	-		CCNA_03113	0.72	+0.2
3,264,303	+		CCNA_03113	0.73	-2.7
3,264,305	-		CCNA_03113	0.73	-0.6
3,264,336	+		CCNA_03113	0.77	+0.5
3,264,344	-		CCNA_03113	0.78	-0.1
3,264,344	-				+3.6
3,264,347	+		CCNA_03113	0.79	-3.1
3,264,353	+		CCNA_03113	0.80	+1.0
3,264,360	-		CCNA_03113	0.81	+1.8
3,264,360	-		CCNA_03113	0.81	-0.1
3,264,360	-		CCNA_03113	0.81	+0.3
3,264,361	-		CCNA_03113	0.81	-0.2
3,264,361	-		CCNA_03113	0.81	+0.5
3,264,361	-		CCNA_03113	0.81	+1.2
3,264,361	-		CCNA_03113	0.81	+0.6
3,264,366	-		CCNA_03113	0.81	+0.4
3,264,412	-		CCNA_03113	0.88	+1.0
3,264,428	+				-0.7
3,264,428	+				-0.2
3,264,465	+				+1.3
3,264,493	-				+1.8
3,264,536	+				-1.0
3,264,540	+				-0.3
3,264,554	-				-0.2
3,264,623	-		CCNA_03114	0.25	-0.5
3,264,625	-		CCNA_03114	0.27	+2.5
3,264,648	-		CCNA_03114	0.40	+1.0
3,264,648	-		CCNA_03114	0.40	-1.5
3,264,657	+		CCNA_03114	0.45	+1.7
3,264,657	+		CCNA_03114	0.45	+0.3
3,264,662	+		CCNA_03114	0.47	-0.5
3,264,665	+		CCNA_03114	0.49	+1.0
3,264,670	-		CCNA_03114	0.52	-0.5
3,264,771	-				-0.6
3,264,778	+				-1.5
3,264,786	-				-0.7
3,264,920	+		CCNA_03115	0.13	+1.4
3,265,011	+		CCNA_03115	0.22	+1.1
3,265,012	+		CCNA_03115	0.22	+0.6
3,265,046	+		CCNA_03115	0.26	-1.6
3,265,066	+		CCNA_03115	0.28	-0.5
3,265,066	+		CCNA_03115	0.28	-0.9
3,265,115	+		CCNA_03115	0.32	-0.2
3,265,181	-		CCNA_03115	0.39	+1.0
3,265,191	+		CCNA_03115	0.40	-0.2
3,265,191	+		CCNA_03115	0.40	+0.6
3,265,191	+		CCNA_03115	0.40	+1.0
3,265,201	+		CCNA_03115	0.41	-1.7
3,265,221	+		CCNA_03115	0.43	+0.6
3,265,307	-		CCNA_03115	0.51	+1.0
3,265,309	+		CCNA_03115	0.52	+0.6
3,265,359	+		CCNA_03115	0.57	-2.1
3,265,367	+		CCNA_03115	0.57	-0.5
3,265,418	+		CCNA_03115	0.62	-1.3
3,265,453	+		CCNA_03115	0.66	+2.0
3,265,458	+		CCNA_03115	0.66	-1.1
3,265,458	+		CCNA_03115	0.66	-1.5
3,265,458	+		CCNA_03115	0.66	+0.3
3,265,762	+				-1.6
3,265,767	+				+2.1
3,265,782	+				+1.7
3,265,782	+				+1.3
3,265,782	+				+2.3
3,265,790	-				-0.7
3,265,790	-				-1.0
3,265,792	+				+2.1
3,265,853	-				+0.0
3,265,879	+				+0.9
3,265,887	-				-0.5
3,265,902	+				+1.7
3,265,902	+				-0.3
3,265,910	-				+0.5
3,265,910	-				-0.3
3,265,924	+				-0.7
3,265,924	+				+0.1
3,265,924	+				+0.4
3,265,924	+				+0.6
3,265,924	+				+0.9
3,265,932	-				+1.1
3,265,932	-				+0.5
3,265,939	+		CCNA_03116	0.12	-0.7
3,265,947	-		CCNA_03116	0.16	-0.7
3,265,947	-		CCNA_03116	0.16	+0.5
3,265,980	-		CCNA_03116	0.31	-0.1
3,265,980	-		CCNA_03116	0.31	+0.0
3,265,980	-		CCNA_03116	0.31	+0.5
3,265,992	-		CCNA_03116	0.36	+0.5
3,265,992	-		CCNA_03116	0.36	+1.6
3,265,992	-		CCNA_03116	0.36	+1.3
3,265,992	-		CCNA_03116	0.36	+1.2
3,265,992	-		CCNA_03116	0.36	+0.4
3,265,992	-		CCNA_03116	0.36	+1.1
3,265,992	-		CCNA_03116	0.36	+0.9
3,265,992	-		CCNA_03116	0.36	+0.2
3,266,117	+				+0.6
3,266,129	+				-0.6
3,266,137	-				+0.5
3,266,147	-				-0.6
3,266,147	-				-0.3
3,266,147	-				-0.7
3,266,179	+				+0.3
3,266,187	-				+1.0
3,266,187	-				+0.7
3,266,195	+				-0.8
3,266,202	+				-0.2
3,266,203	-				-0.1
3,266,203	-				-0.1
3,266,207	+				-1.3
3,266,215	-				-1.7
3,266,321	-				-0.5
3,266,323	+				+0.3
3,266,323	+				-1.7
3,266,374	+		CCNA_03117	0.16	-0.1
3,266,382	-		CCNA_03117	0.17	-1.1
3,266,382	-		CCNA_03117	0.17	+0.4
3,266,388	-		CCNA_03117	0.18	+0.3
3,266,407	+		CCNA_03117	0.22	+0.3
3,266,407	+		CCNA_03117	0.22	-0.7
3,266,407	+		CCNA_03117	0.22	-0.6
3,266,415	-		CCNA_03117	0.23	-0.2
3,266,415	-		CCNA_03117	0.23	-0.8
3,266,430	+		CCNA_03117	0.26	+0.7
3,266,430	+		CCNA_03117	0.26	+0.9
3,266,434	+		CCNA_03117	0.27	+0.6
3,266,434	+		CCNA_03117	0.27	+0.4
3,266,477	+				+2.6
3,266,477	+		CCNA_03117	0.35	+0.5
3,266,477	+		CCNA_03117	0.35	+0.3
3,266,477	+		CCNA_03117	0.35	+0.9
3,266,485	-		CCNA_03117	0.36	-1.0
3,266,485	-		CCNA_03117	0.36	-0.8
3,266,487	+		CCNA_03117	0.37	+2.2
3,266,489	+		CCNA_03117	0.37	-0.2
3,266,502	+		CCNA_03117	0.39	-0.3
3,266,544	-		CCNA_03117	0.47	+0.3
3,266,566	+		CCNA_03117	0.51	+1.1
3,266,566	+		CCNA_03117	0.51	+0.1
3,266,566	+		CCNA_03117	0.51	-0.2
3,266,574	-		CCNA_03117	0.53	+2.9
3,266,607	+		CCNA_03117	0.59	+1.1
3,266,623	+		CCNA_03117	0.62	+1.1
3,266,711	-		CCNA_03117	0.78	+1.1
3,266,740	-		CCNA_03117	0.83	-2.3
3,266,749	-		CCNA_03117	0.85	-0.3
3,266,772	-		CCNA_03117	0.89	+2.0