Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02166

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
2,319,345	-				-1.2
2,319,389	-		CCNA_02165	0.12	-1.3
2,319,390	-		CCNA_02165	0.12	-0.4
2,319,414	-		CCNA_02165	0.14	-1.1
2,319,434	-		CCNA_02165	0.16	-0.4
2,319,455	+		CCNA_02165	0.18	-1.0
2,319,463	+		CCNA_02165	0.19	-1.1
2,319,463	+		CCNA_02165	0.19	-2.4
2,319,471	-		CCNA_02165	0.19	+0.1
2,319,487	+		CCNA_02165	0.21	-1.4
2,319,493	+		CCNA_02165	0.21	-0.8
2,319,552	+		CCNA_02165	0.27	-1.3
2,319,558	+		CCNA_02165	0.28	+0.3
2,319,560	-		CCNA_02165	0.28	-1.3
2,319,560	-		CCNA_02165	0.28	-0.8
2,319,605	+		CCNA_02165	0.32	-0.0
2,319,605	+		CCNA_02165	0.32	+0.1
2,319,620	-		CCNA_02165	0.33	+0.1
2,319,630	-				+0.3
2,319,631	-		CCNA_02165	0.34	-2.0
2,319,635	+		CCNA_02165	0.35	-1.8
2,319,635	+		CCNA_02165	0.35	-1.6
2,319,648	+		CCNA_02165	0.36	-2.0
2,319,656	-		CCNA_02165	0.37	-2.6
2,319,656	-		CCNA_02165	0.37	-1.0
2,319,656	-		CCNA_02165	0.37	-1.7
2,319,711	+		CCNA_02165	0.42	-1.7
2,319,712	-		CCNA_02165	0.42	+1.3
2,319,713	-		CCNA_02165	0.42	-1.4
2,319,714	-		CCNA_02165	0.42	+0.5
2,319,714	-		CCNA_02165	0.42	-1.0
2,319,753	+		CCNA_02165	0.46	-0.9
2,319,812	+		CCNA_02165	0.52	-0.5
2,319,812	+		CCNA_02165	0.52	-0.6
2,319,812	+		CCNA_02165	0.52	+1.4
2,319,812	+		CCNA_02165	0.52	+1.5
2,319,820	-		CCNA_02165	0.52	+0.5
2,319,820	-		CCNA_02165	0.52	+0.3
2,319,820	-		CCNA_02165	0.52	+0.1
2,319,820	-		CCNA_02165	0.52	-0.6
2,319,821	-		CCNA_02165	0.52	-1.3
2,319,835	+		CCNA_02165	0.54	-2.0
2,319,867	-		CCNA_02165	0.57	-1.0
2,319,872	-		CCNA_02165	0.57	-1.2
2,319,889	-		CCNA_02165	0.59	-0.5
2,319,915	+		CCNA_02165	0.61	+0.7
2,319,940	-		CCNA_02165	0.64	-0.1
2,319,951	+		CCNA_02165	0.65	-1.3
2,319,951	+		CCNA_02165	0.65	+1.2
2,319,951	+		CCNA_02165	0.65	-1.2
2,319,951	+		CCNA_02165	0.65	-1.0
2,319,951	+		CCNA_02165	0.65	-0.6
2,319,959	-		CCNA_02165	0.65	+0.6
2,319,959	-		CCNA_02165	0.65	+0.2
2,320,005	-		CCNA_02165	0.70	+0.1
2,320,044	-		CCNA_02165	0.73	-1.2
2,320,049	+		CCNA_02165	0.74	-0.9
2,320,089	+		CCNA_02165	0.78	+0.6
2,320,095	-		CCNA_02165	0.78	+1.2
2,320,107	-		CCNA_02165	0.79	-0.3
2,320,142	-		CCNA_02165	0.83	-0.4
2,320,178	-		CCNA_02165	0.86	+0.5
2,320,272	+				-2.2
2,320,304	+				-0.3
2,320,304	+				-0.5
2,320,312	-				-0.6
2,320,312	-				-0.8
2,320,344	-				+0.9
2,320,354	-				-0.4
2,320,358	-				-0.1
2,320,361	+				-0.0
2,320,361	+				-0.6
2,320,361	+				-1.6
2,320,368	+				+0.7
2,320,369	-				-0.5
2,320,373	+				-1.8
2,320,406	+		CCNA_02166	0.15	-1.2
2,320,406	+		CCNA_02166	0.15	-3.1
2,320,478	+		CCNA_02166	0.27	-1.0
2,320,486	-		CCNA_02166	0.28	+0.5
2,320,486	-		CCNA_02166	0.28	-1.7
2,320,486	-		CCNA_02166	0.28	-0.7
2,320,508	+		CCNA_02166	0.32	-2.1
2,320,509	+		CCNA_02166	0.32	-3.4
2,320,513	+		CCNA_02166	0.33	-1.6
2,320,513	+		CCNA_02166	0.33	-2.9
2,320,513	+		CCNA_02166	0.33	-1.9
2,320,521	-		CCNA_02166	0.34	-0.8
2,320,521	-		CCNA_02166	0.34	-0.8
2,320,521	-		CCNA_02166	0.34	-0.8
2,320,521	-		CCNA_02166	0.34	+0.9
2,320,545	+		CCNA_02166	0.38	-1.1
2,320,550	+		CCNA_02166	0.39	+0.1
2,320,558	-		CCNA_02166	0.41	-1.1
2,320,558	-		CCNA_02166	0.41	-0.9
2,320,558	-		CCNA_02166	0.41	+0.4
2,320,587	+		CCNA_02166	0.45	-2.5
2,320,590	-		CCNA_02166	0.46	-1.2
2,320,590	-		CCNA_02166	0.46	-0.7
2,320,590	-		CCNA_02166	0.46	-0.2
2,320,595	-		CCNA_02166	0.47	-2.0
2,320,605	+		CCNA_02166	0.49	-0.9
2,320,707	-		CCNA_02166	0.66	+0.5
2,320,730	+		CCNA_02166	0.70	-0.0
2,320,738	-		CCNA_02166	0.71	-1.0
2,320,752	+		CCNA_02166	0.74	-1.4
2,320,760	-		CCNA_02166	0.75	+0.6
2,320,811	+		CCNA_02166	0.84	-1.9
2,320,830	+		CCNA_02166	0.87	-2.7
2,320,917	+				-0.3
2,320,919	-				-0.2
2,320,955	-				-0.1
2,321,000	-				+0.0
2,321,003	+				-1.2
2,321,011	-				-0.4
2,321,011	-				-0.2
2,321,019	+		CCNA_02167	0.11	-1.5
2,321,025	+		CCNA_02167	0.12	+0.5
2,321,025	+		CCNA_02167	0.12	-0.3
2,321,026	-		CCNA_02167	0.12	-0.6
2,321,027	-		CCNA_02167	0.12	-0.6
2,321,027	-		CCNA_02167	0.12	-1.0
2,321,027	-		CCNA_02167	0.12	-0.3
2,321,033	-		CCNA_02167	0.13	-1.3
2,321,073	-		CCNA_02167	0.20	-1.3
2,321,107	+		CCNA_02167	0.25	-0.7
2,321,107	+		CCNA_02167	0.25	-2.2
2,321,115	-		CCNA_02167	0.26	-1.0
2,321,143	+		CCNA_02167	0.31	-0.1
2,321,157	+		CCNA_02167	0.33	-0.3
2,321,163	-		CCNA_02167	0.34	+0.1
2,321,165	-		CCNA_02167	0.34	-1.6
2,321,245	+		CCNA_02167	0.47	-1.1
2,321,302	+		CCNA_02167	0.56	-2.3
2,321,340	+		CCNA_02167	0.62	-0.2
2,321,356	+		CCNA_02167	0.64	+0.9
2,321,364	-		CCNA_02167	0.66	+0.7
2,321,364	-		CCNA_02167	0.66	+0.8
2,321,369	-		CCNA_02167	0.66	+2.6
2,321,369	-		CCNA_02167	0.66	-0.1
2,321,399	+		CCNA_02167	0.71	-1.2
2,321,456	-		CCNA_02167	0.80	+1.3
2,321,482	-		CCNA_02167	0.84	+0.6
2,321,483	-		CCNA_02167	0.84	+0.6
2,321,487	-		CCNA_02167	0.85	-1.9
2,321,493	+		CCNA_02167	0.86	+1.6
2,321,494	+		CCNA_02167	0.86	-1.5
2,321,494	+		CCNA_02167	0.86	-0.9
2,321,494	+		CCNA_02167	0.86	+0.3
2,321,501	-		CCNA_02167	0.87	-0.0
2,321,501	-		CCNA_02167	0.87	-2.9
2,321,501	-		CCNA_02167	0.87	+1.3
2,321,502	-		CCNA_02167	0.87	-0.8
2,321,509	-		CCNA_02167	0.88	-0.0
2,321,531	+				+0.2
2,321,533	-				-2.6
2,321,539	-				-0.9
2,321,606	+				-2.2
2,321,606	+				-0.0
2,321,606	+				-0.6
2,321,613	-				+1.0
2,321,613	-				+0.7
2,321,614	-				+0.2
2,321,614	-				+0.8
2,321,614	-				+1.0
2,321,665	-				+0.3
2,321,678	+				-1.4
2,321,686	-		CCNA_03897	0.11	+0.4
2,321,808	+		CCNA_03897	0.53	+1.1
2,321,828	-		CCNA_03897	0.60	+1.9
2,321,853	-		CCNA_03897	0.69	-1.2
2,321,887	+		CCNA_03897	0.81	-1.7
2,321,895	-		CCNA_03897	0.83	-1.3