Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01866

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
1,999,532	+				-0.9
1,999,540	-				+0.6
1,999,598	-		CCNA_01865	0.15	-3.1
1,999,627	-		CCNA_01865	0.17	+2.8
1,999,651	+		CCNA_01865	0.20	+2.2
1,999,651	+		CCNA_01865	0.20	+0.7
1,999,652	-		CCNA_01865	0.20	+0.6
1,999,659	-		CCNA_01865	0.20	-1.2
1,999,659	-		CCNA_01865	0.20	-0.5
1,999,665	+		CCNA_01865	0.21	+0.2
1,999,670	+		CCNA_01865	0.21	+1.0
1,999,673	-		CCNA_01865	0.22	-0.8
1,999,675	+		CCNA_01865	0.22	+0.3
1,999,683	-		CCNA_01865	0.22	+1.2
1,999,683	-		CCNA_01865	0.22	-0.4
1,999,699	+		CCNA_01865	0.24	+0.3
1,999,744	+		CCNA_01865	0.28	+1.8
1,999,758	+		CCNA_01865	0.29	+0.6
1,999,758	+		CCNA_01865	0.29	-0.7
1,999,773	+		CCNA_01865	0.31	+0.5
1,999,781	-		CCNA_01865	0.31	-2.2
1,999,781	-		CCNA_01865	0.31	+0.7
1,999,783	+		CCNA_01865	0.32	-1.0
1,999,783	+		CCNA_01865	0.32	-0.0
1,999,791	-		CCNA_01865	0.32	+0.8
1,999,850	+		CCNA_01865	0.38	-0.3
1,999,858	-		CCNA_01865	0.39	-1.2
1,999,858	-		CCNA_01865	0.39	+1.1
1,999,858	-		CCNA_01865	0.39	-1.5
1,999,858	-		CCNA_01865	0.39	+0.3
1,999,860	+				+0.5
1,999,860	+		CCNA_01865	0.39	-0.9
1,999,863	-		CCNA_01865	0.39	-1.1
1,999,863	-		CCNA_01865	0.39	-2.2
1,999,868	-		CCNA_01865	0.39	+1.1
1,999,868	-		CCNA_01865	0.39	-1.1
1,999,868	-		CCNA_01865	0.39	-0.6
1,999,868	-		CCNA_01865	0.39	+1.8
1,999,874	-		CCNA_01865	0.40	-1.1
1,999,899	-		CCNA_01865	0.42	+0.1
1,999,926	-		CCNA_01865	0.45	-1.1
1,999,948	+		CCNA_01865	0.47	+0.6
1,999,948	+		CCNA_01865	0.47	-2.9
1,999,956	-		CCNA_01865	0.48	-2.4
1,999,961	-		CCNA_01865	0.48	-0.6
1,999,989	+		CCNA_01865	0.51	+0.5
2,000,034	-		CCNA_01865	0.55	+0.1
2,000,050	-		CCNA_01865	0.56	-1.3
2,000,081	-		CCNA_01865	0.59	-0.2
2,000,087	+		CCNA_01865	0.60	+0.1
2,000,087	+		CCNA_01865	0.60	-1.3
2,000,087	+		CCNA_01865	0.60	-0.1
2,000,087	+		CCNA_01865	0.60	+0.6
2,000,092	+		CCNA_01865	0.60	+0.3
2,000,092	+		CCNA_01865	0.60	+0.4
2,000,092	+		CCNA_01865	0.60	+0.1
2,000,092	+		CCNA_01865	0.60	-0.6
2,000,092	+		CCNA_01865	0.60	-1.8
2,000,092	+		CCNA_01865	0.60	+1.0
2,000,092	+		CCNA_01865	0.60	-2.6
2,000,092	+		CCNA_01865	0.60	+2.0
2,000,095	-		CCNA_01865	0.60	-1.2
2,000,100	-		CCNA_01865	0.61	+1.8
2,000,100	-		CCNA_01865	0.61	+0.5
2,000,100	-		CCNA_01865	0.61	-0.5
2,000,100	-		CCNA_01865	0.61	-0.3
2,000,100	-		CCNA_01865	0.61	-0.5
2,000,100	-		CCNA_01865	0.61	-1.3
2,000,155	+		CCNA_01865	0.66	-2.2
2,000,204	+		CCNA_01865	0.70	-1.5
2,000,212	-		CCNA_01865	0.71	+1.8
2,000,212	-		CCNA_01865	0.71	+1.3
2,000,212	-		CCNA_01865	0.71	+0.1
2,000,236	-		CCNA_01865	0.73	-1.3
2,000,254	+				+1.5
2,000,260	-		CCNA_01865	0.75	-1.2
2,000,261	-		CCNA_01865	0.76	+0.5
2,000,302	+				+1.0
2,000,302	+		CCNA_01865	0.79	-0.1
2,000,325	-		CCNA_01865	0.81	+1.1
2,000,325	-		CCNA_01865	0.81	+0.6
2,000,351	-		CCNA_01865	0.84	+3.3
2,000,351	-		CCNA_01865	0.84	+3.2
2,000,403	+		CCNA_01865	0.89	+0.1
2,000,408	+		CCNA_01865	0.89	-0.5
2,000,437	-				+1.6
2,000,481	-				-0.6
2,000,487	+				+1.2
2,000,502	+				+1.0
2,000,516	-				+0.7
2,000,581	-				-1.7
2,000,586	+				+1.9
2,000,612	-				-0.3
2,000,627	-				-1.1
2,000,637	+				+0.2
2,000,637	-				-0.3
2,000,666	-				-1.7
2,000,670	+				+1.5
2,000,706	-				+0.8
2,000,753	-				+0.6
2,000,772	+				-0.8
2,000,787	+				-1.9
2,000,787	+				+1.0
2,000,793	+				-0.6
2,000,795	-				-0.2
2,000,853	+		CCNA_01866	0.11	-1.0
2,000,856	-		CCNA_01866	0.11	-0.4
2,000,856	-		CCNA_01866	0.11	-1.8
2,000,868	-		CCNA_01866	0.11	+1.2
2,000,882	-		CCNA_01866	0.12	+1.8
2,000,912	-		CCNA_01866	0.13	-0.1
2,000,966	+		CCNA_01866	0.14	+2.2
2,000,974	-		CCNA_01866	0.15	-1.1
2,000,974	-		CCNA_01866	0.15	-0.3
2,000,974	-		CCNA_01866	0.15	+1.0
2,001,002	+		CCNA_01866	0.15	+0.5
2,001,083	-		CCNA_01866	0.18	+0.1
2,001,092	+		CCNA_01866	0.18	+0.6
2,001,115	+		CCNA_01866	0.19	+1.0
2,001,115	+		CCNA_01866	0.19	-0.6
2,001,115	+		CCNA_01866	0.19	+1.8
2,001,115	+		CCNA_01866	0.19	-0.9
2,001,115	+		CCNA_01866	0.19	-0.0
2,001,115	+		CCNA_01866	0.19	-2.0
2,001,115	+		CCNA_01866	0.19	-1.4
2,001,115	+		CCNA_01866	0.19	+0.6
2,001,115	+		CCNA_01866	0.19	+1.0
2,001,123	-		CCNA_01866	0.19	+2.4
2,001,123	-		CCNA_01866	0.19	-0.8
2,001,123	-		CCNA_01866	0.19	-0.0
2,001,123	-		CCNA_01866	0.19	-0.3
2,001,123	-		CCNA_01866	0.19	-0.7
2,001,123	-		CCNA_01866	0.19	-1.5
2,001,123	-		CCNA_01866	0.19	-2.1
2,001,129	-		CCNA_01866	0.20	+1.2
2,001,207	+		CCNA_01866	0.22	-0.5
2,001,207	+		CCNA_01866	0.22	-0.0
2,001,214	-		CCNA_01866	0.22	-0.5
2,001,214	-		CCNA_01866	0.22	-0.6
2,001,238	+		CCNA_01866	0.23	-0.5
2,001,246	-		CCNA_01866	0.23	-0.5
2,001,248	+		CCNA_01866	0.23	+1.2
2,001,256	-		CCNA_01866	0.24	+0.1
2,001,308	+		CCNA_01866	0.25	-0.0
2,001,308	+		CCNA_01866	0.25	-0.9
2,001,308	+		CCNA_01866	0.25	+0.5
2,001,308	+		CCNA_01866	0.25	-0.4
2,001,308	+		CCNA_01866	0.25	+1.5
2,001,308	+		CCNA_01866	0.25	+1.8
2,001,308	+		CCNA_01866	0.25	+0.6
2,001,316	-		CCNA_01866	0.26	-0.8
2,001,316	-		CCNA_01866	0.26	-0.3
2,001,316	-		CCNA_01866	0.26	-1.0
2,001,316	-		CCNA_01866	0.26	-2.3
2,001,316	-		CCNA_01866	0.26	-0.4
2,001,372	+		CCNA_01866	0.27	+0.8
2,001,406	+		CCNA_01866	0.28	-1.7
2,001,406	+				+1.8
2,001,406	+		CCNA_01866	0.28	-0.8
2,001,414	-		CCNA_01866	0.29	-0.2
2,001,414	-				+2.2
2,001,414	-		CCNA_01866	0.29	-0.5
2,001,419	-		CCNA_01866	0.29	-2.0
2,001,451	-		CCNA_01866	0.30	+1.5
2,001,498	+		CCNA_01866	0.31	-1.2
2,001,506	-		CCNA_01866	0.32	+0.3
2,001,506	-		CCNA_01866	0.32	-1.4
2,001,573	+		CCNA_01866	0.34	-0.9
2,001,582	+		CCNA_01866	0.34	+1.5
2,001,591	-		CCNA_01866	0.34	-1.6
2,001,612	+		CCNA_01866	0.35	-1.3
2,001,619	-		CCNA_01866	0.35	-0.1
2,001,632	-		CCNA_01866	0.36	-0.3
2,001,672	+		CCNA_01866	0.37	+1.0
2,001,690	-		CCNA_01866	0.38	-1.8
2,001,701	+		CCNA_01866	0.38	-0.5
2,001,743	-		CCNA_01866	0.39	-2.0
2,001,798	+		CCNA_01866	0.41	+0.1
2,001,799	+		CCNA_01866	0.41	-0.7
2,001,806	-		CCNA_01866	0.41	-0.5
2,001,806	-		CCNA_01866	0.41	+0.2
2,001,809	+		CCNA_01866	0.41	-1.9
2,001,828	+		CCNA_01866	0.42	-1.3
2,001,836	-		CCNA_01866	0.42	-0.9
2,001,874	+		CCNA_01866	0.44	-1.5
2,001,882	-		CCNA_01866	0.44	-0.0
2,001,887	-		CCNA_01866	0.44	+0.6
2,001,887	-		CCNA_01866	0.44	+0.1
2,001,887	-		CCNA_01866	0.44	-1.2
2,001,887	-		CCNA_01866	0.44	+0.2
2,001,892	-		CCNA_01866	0.44	+1.5
2,001,914	+		CCNA_01866	0.45	+1.2
2,001,922	-		CCNA_01866	0.45	+0.6
2,001,922	-		CCNA_01866	0.45	-0.9
2,001,929	-		CCNA_01866	0.45	-0.8
2,001,974	+		CCNA_01866	0.47	+1.0
2,001,982	-		CCNA_01866	0.47	-0.2
2,001,992	-		CCNA_01866	0.47	-0.0
2,001,995	+		CCNA_01866	0.47	-1.7
2,002,048	+		CCNA_01866	0.49	-1.0
2,002,076	-		CCNA_01866	0.50	-2.0
2,002,078	+		CCNA_01866	0.50	+1.8
2,002,083	+		CCNA_01866	0.50	+0.6
2,002,083	+		CCNA_01866	0.50	-1.4
2,002,091	-		CCNA_01866	0.51	-1.2
2,002,109	-		CCNA_01866	0.51	+0.8
2,002,116	+		CCNA_01866	0.51	-1.0
2,002,131	-		CCNA_01866	0.52	-2.4
2,002,135	-		CCNA_01866	0.52	+1.2
2,002,135	-		CCNA_01866	0.52	-2.4
2,002,135	-		CCNA_01866	0.52	-0.3
2,002,136	-		CCNA_01866	0.52	+1.0
2,002,166	+		CCNA_01866	0.53	-0.4
2,002,194	-		CCNA_01866	0.54	-1.3
2,002,194	-		CCNA_01866	0.54	-1.3
2,002,229	-		CCNA_01866	0.55	-0.3
2,002,229	-		CCNA_01866	0.55	-1.3
2,002,273	+		CCNA_01866	0.56	-0.9
2,002,314	+		CCNA_01866	0.58	+0.5
2,002,329	+		CCNA_01866	0.58	-0.1
2,002,439	+		CCNA_01866	0.62	+0.2
2,002,485	-		CCNA_01866	0.63	+0.2
2,002,503	+		CCNA_01866	0.64	+0.4
2,002,574	+		CCNA_01866	0.66	-2.0
2,002,582	+		CCNA_01866	0.66	-0.2
2,002,582	+		CCNA_01866	0.66	-1.0
2,002,582	-		CCNA_01866	0.66	-0.7
2,002,582	-		CCNA_01866	0.66	-2.1
2,002,582	-		CCNA_01866	0.66	-0.5
2,002,582	-		CCNA_01866	0.66	-0.5
2,002,582	-		CCNA_01866	0.66	-1.5
2,002,582	-		CCNA_01866	0.66	+0.2
2,002,590	-				+0.8
2,002,590	-		CCNA_01866	0.67	+0.8
2,002,590	-		CCNA_01866	0.67	-0.2
2,002,613	+		CCNA_01866	0.67	-0.1
2,002,613	+		CCNA_01866	0.67	-0.1
2,002,613	+		CCNA_01866	0.67	-1.5
2,002,613	+		CCNA_01866	0.67	-0.7
2,002,621	-		CCNA_01866	0.68	-0.5
2,002,621	-		CCNA_01866	0.68	+0.2
2,002,621	-		CCNA_01866	0.68	+1.2
2,002,621	-		CCNA_01866	0.68	-0.2
2,002,621	-		CCNA_01866	0.68	+0.8
2,002,621	-		CCNA_01866	0.68	-0.4
2,002,621	-		CCNA_01866	0.68	+0.5
2,002,621	-		CCNA_01866	0.68	-1.4
2,002,681	+		CCNA_01866	0.70	-1.1
2,002,681	+		CCNA_01866	0.70	+1.1
2,002,681	+		CCNA_01866	0.70	-0.4
2,002,689	-		CCNA_01866	0.70	-1.2
2,002,689	-		CCNA_01866	0.70	-0.5
2,002,689	-		CCNA_01866	0.70	-0.5
2,002,689	-		CCNA_01866	0.70	-1.3
2,002,707	+		CCNA_01866	0.70	-1.4
2,002,739	+		CCNA_01866	0.72	-0.5
2,002,763	+		CCNA_01866	0.72	+0.6
2,002,771	-		CCNA_01866	0.73	-1.0
2,002,797	+		CCNA_01866	0.73	-1.1
2,002,831	+		CCNA_01866	0.74	+2.6
2,002,831	+		CCNA_01866	0.74	-0.0
2,002,831	-		CCNA_01866	0.74	-2.0
2,002,838	-		CCNA_01866	0.75	-0.1
2,002,895	-		CCNA_01866	0.77	+0.2
2,002,938	-		CCNA_01866	0.78	+0.8
2,003,021	+		CCNA_01866	0.81	-1.2
2,003,029	-		CCNA_01866	0.81	-1.5
2,003,084	+		CCNA_01866	0.83	-1.5
2,003,100	+		CCNA_01866	0.83	-0.4
2,003,157	+		CCNA_01866	0.85	+0.2
2,003,196	+		CCNA_01866	0.86	-0.0
2,003,196	+		CCNA_01866	0.86	-0.6
2,003,207	+		CCNA_01866	0.87	-0.9
2,003,241	-		CCNA_01866	0.88	+1.8
2,003,262	+		CCNA_01866	0.88	-1.5
2,003,262	+		CCNA_01866	0.88	-0.9
2,003,277	+		CCNA_01866	0.89	+0.0
2,003,290	-		CCNA_01866	0.89	-0.3
2,003,299	+		CCNA_01866	0.90	-2.1
2,003,305	+		CCNA_01866	0.90	+0.2
2,003,320	+				-2.1
2,003,324	+				-0.9
2,003,335	+				-0.5
2,003,347	+				-1.6
2,003,355	-				+0.6
2,003,375	-				-0.6
2,003,434	+				-0.4
2,003,508	+				-0.0
2,003,508	+				-1.6
2,003,508	+				-0.1
2,003,511	-				+1.8
2,003,516	-				+1.2
2,003,555	+				+1.1
2,003,568	-				+1.5
2,003,570	+				-0.3
2,003,578	-				-0.1
2,003,581	+				+0.3
2,003,591	-				-0.2
2,003,610	-				-0.9
2,003,615	-				+0.8
2,003,672	+				+0.1
2,003,747	+				-0.6
2,003,755	-				-1.3
2,003,830	-				+0.7
2,003,863	-				-1.4
2,003,888	-				-1.1
2,003,890	+				-1.0
2,003,898	-				+1.0
2,003,898	-				+1.6
2,003,991	+		CCNA_03894	0.14	+0.8
2,004,075	+		CCNA_03894	0.21	+0.7
2,004,075	+		CCNA_03894	0.21	+1.7
2,004,075	+		CCNA_03894	0.21	+0.6
2,004,083	-		CCNA_03894	0.22	+1.3
2,004,083	-		CCNA_03894	0.22	-0.9
2,004,085	+		CCNA_03894	0.22	-0.2
2,004,090	+		CCNA_03894	0.22	-1.0
2,004,125	+		CCNA_03894	0.25	+1.2
2,004,156	-		CCNA_03894	0.28	+2.3
2,004,204	+		CCNA_03894	0.31	+0.2
2,004,222	+		CCNA_03894	0.33	+0.1
2,004,232	+		CCNA_03894	0.34	+0.8
2,004,242	+		CCNA_03894	0.35	+1.8
2,004,242	+		CCNA_03894	0.35	-1.5
2,004,243	-		CCNA_03894	0.35	-2.3
2,004,259	+		CCNA_03894	0.36	+0.1
2,004,279	+		CCNA_03894	0.38	-1.6
2,004,320	+		CCNA_03894	0.41	-0.1
2,004,326	-		CCNA_03894	0.41	+0.4
2,004,328	-		CCNA_03894	0.42	-1.4
2,004,328	-		CCNA_03894	0.42	-1.5
2,004,328	-		CCNA_03894	0.42	+0.0
2,004,338	-		CCNA_03894	0.42	-0.9
2,004,439	-		CCNA_03894	0.50	-1.1
2,004,544	-		CCNA_03894	0.59	-0.3
2,004,545	+		CCNA_03894	0.59	-2.3
2,004,556	+		CCNA_03894	0.60	-0.2
2,004,558	-		CCNA_03894	0.60	-0.5
2,004,558	-		CCNA_03894	0.60	-1.6
2,004,559	-		CCNA_03894	0.60	-0.6
2,004,564	-		CCNA_03894	0.61	+0.9
2,004,569	-		CCNA_03894	0.61	-1.5
2,004,621	-		CCNA_03894	0.65	+0.2