Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01831

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
1,958,652	-		CCNA_01830	0.69	-1.0
1,958,713	+		CCNA_01830	0.71	+0.3
1,958,713	+		CCNA_01830	0.71	-1.5
1,958,718	+		CCNA_01830	0.71	-0.3
1,958,718	+		CCNA_01830	0.71	-0.4
1,958,728	+		CCNA_01830	0.72	-0.7
1,958,785	+		CCNA_01830	0.74	-0.7
1,958,786	-		CCNA_01830	0.74	+1.6
1,958,819	+		CCNA_01830	0.75	-1.7
1,958,893	-		CCNA_01830	0.78	-1.0
1,958,918	-		CCNA_01830	0.78	+0.6
1,959,022	+		CCNA_01830	0.82	+0.3
1,959,022	+		CCNA_01830	0.82	+0.1
1,959,030	-		CCNA_01830	0.82	-1.5
1,959,038	-		CCNA_01830	0.83	+2.9
1,959,084	-		CCNA_01830	0.84	+0.3
1,959,090	-		CCNA_01830	0.84	+0.2
1,959,100	-		CCNA_01830	0.85	+0.4
1,959,105	-		CCNA_01830	0.85	-1.1
1,959,112	+		CCNA_01830	0.85	-1.5
1,959,115	-		CCNA_01830	0.85	-1.7
1,959,117	+		CCNA_01830	0.85	-0.5
1,959,155	-		CCNA_01830	0.87	+1.6
1,959,178	+		CCNA_01830	0.87	+0.2
1,959,188	+		CCNA_01830	0.88	+0.3
1,959,188	+		CCNA_01830	0.88	+1.3
1,959,207	+		CCNA_01830	0.89	+0.2
1,959,244	+		CCNA_01830	0.90	-0.1
1,959,252	-				-1.5
1,959,280	-				-2.1
1,959,283	-				+0.9
1,959,340	+				-1.2
1,959,341	+				-0.7
1,959,368	-				-1.1
1,959,397	+				+0.3
1,959,431	+				-0.3
1,959,434	-				-1.6
1,959,448	+				+0.7
1,959,514	-				-0.1
1,959,529	+				+0.5
1,959,555	+				+0.2
1,959,558	+				+0.1
1,959,558	+				+1.1
1,959,560	+				+1.2
1,959,568	+				+1.3
1,959,581	+				-0.0
1,959,617	+				-0.8
1,959,646	-				-1.2
1,959,717	+				-1.0
1,959,717	+				-1.5
1,959,739	+				-1.1
1,959,744	+				+0.6
1,959,759	+				-0.7
1,959,762	-				-0.3
1,959,778	+				-0.2
1,959,783	+				-0.5
1,959,783	+				-1.0
1,959,783	+				-1.5
1,959,791	-				+0.1
1,959,825	-		CCNA_01831	0.11	+0.1
1,959,825	-		CCNA_01831	0.11	-0.6
1,959,834	+		CCNA_01831	0.12	+0.6
1,959,842	-		CCNA_01831	0.13	+0.6
1,959,842	-		CCNA_01831	0.13	-0.3
1,959,863	+		CCNA_01831	0.14	-0.2
1,959,863	+		CCNA_01831	0.14	+0.6
1,959,873	+		CCNA_01831	0.15	+0.3
1,959,926	+		CCNA_01831	0.18	-1.3
1,959,933	+		CCNA_01831	0.19	-1.8
1,959,941	-		CCNA_01831	0.19	-0.3
1,959,941	-		CCNA_01831	0.19	+0.0
1,959,948	+		CCNA_01831	0.20	-1.2
1,959,948	+		CCNA_01831	0.20	+2.3
1,959,953	+		CCNA_01831	0.20	-1.2
1,959,953	+		CCNA_01831	0.20	-1.3
1,959,956	-		CCNA_01831	0.20	-1.4
1,959,961	-		CCNA_01831	0.20	-1.9
1,959,980	-		CCNA_01831	0.22	+0.2
1,959,993	+		CCNA_01831	0.23	-1.7
1,959,993	+		CCNA_01831	0.23	+0.5
1,960,044	+		CCNA_01831	0.26	-0.9
1,960,112	+		CCNA_01831	0.30	-1.8
1,960,138	+		CCNA_01831	0.32	+1.9
1,960,146	-		CCNA_01831	0.33	-1.7
1,960,146	-		CCNA_01831	0.33	-0.1
1,960,161	-		CCNA_01831	0.34	-1.8
1,960,209	+		CCNA_01831	0.37	+1.9
1,960,209	+				+2.9
1,960,233	+		CCNA_01831	0.38	-0.3
1,960,241	-		CCNA_01831	0.39	+0.3
1,960,241	-		CCNA_01831	0.39	-0.3
1,960,247	+		CCNA_01831	0.39	+1.6
1,960,251	+		CCNA_01831	0.39	-1.3
1,960,260	+		CCNA_01831	0.40	+0.5
1,960,285	+				+1.1
1,960,285	+		CCNA_01831	0.42	+0.4
1,960,296	+		CCNA_01831	0.42	-0.5
1,960,391	-		CCNA_01831	0.49	-1.0
1,960,418	+		CCNA_01831	0.50	+0.3
1,960,457	-		CCNA_01831	0.53	+0.3
1,960,461	-				+0.9
1,960,469	+		CCNA_01831	0.54	+1.9
1,960,508	-		CCNA_01831	0.56	+0.0
1,960,528	+		CCNA_01831	0.58	-2.2
1,960,541	-		CCNA_01831	0.58	-0.5
1,960,624	-		CCNA_01831	0.64	+0.2
1,960,648	+		CCNA_01831	0.65	+0.2
1,960,668	+		CCNA_01831	0.67	+1.9
1,960,683	+		CCNA_01831	0.68	-0.8
1,960,683	+		CCNA_01831	0.68	-0.7
1,960,683	+		CCNA_01831	0.68	-0.4
1,960,683	+		CCNA_01831	0.68	+0.2
1,960,683	+		CCNA_01831	0.68	-0.8
1,960,691	-		CCNA_01831	0.68	+0.5
1,960,691	-		CCNA_01831	0.68	-0.9
1,960,691	-		CCNA_01831	0.68	+0.4
1,960,691	-		CCNA_01831	0.68	+0.9
1,960,691	-		CCNA_01831	0.68	-0.5
1,960,703	+		CCNA_01831	0.69	-0.1
1,960,711	-		CCNA_01831	0.70	-0.3
1,960,763	-		CCNA_01831	0.73	+1.0
1,960,835	-		CCNA_01831	0.78	-0.6
1,960,983	+		CCNA_01831	0.87	-0.2
1,961,010	+		CCNA_01831	0.89	+0.6
1,961,010	+		CCNA_01831	0.89	-1.2
1,961,010	+		CCNA_01831	0.89	-0.6
1,961,010	+		CCNA_01831	0.89	+1.9
1,961,010	+		CCNA_01831	0.89	-2.5
1,961,010	+		CCNA_01831	0.89	-0.8
1,961,010	+		CCNA_01831	0.89	-0.5
1,961,010	+		CCNA_01831	0.89	+0.1
1,961,010	+		CCNA_01831	0.89	+0.3
1,961,010	+		CCNA_01831	0.89	-0.8
1,961,010	+		CCNA_01831	0.89	-1.8
1,961,018	-		CCNA_01831	0.90	+0.9
1,961,018	-		CCNA_01831	0.90	-1.1
1,961,018	-		CCNA_01831	0.90	-0.4
1,961,018	-		CCNA_01831	0.90	+1.3
1,961,018	-		CCNA_01831	0.90	-1.3
1,961,018	-		CCNA_01831	0.90	-0.3
1,961,018	-		CCNA_01831	0.90	-2.7
1,961,029	+				+2.5
1,961,033	-				+0.5
1,961,097	-				+0.4
1,961,139	-				-2.0
1,961,159	+				-0.9
1,961,222	-				-0.8
1,961,238	+				+0.1
1,961,295	+				-0.9
1,961,303	-				-0.6
1,961,304	-				+0.3
1,961,308	-				-1.9
1,961,319	-				-0.3
1,961,319	-				+0.5
1,961,319	-				-0.7
1,961,319	-				-1.4
1,961,324	-				-0.9
1,961,340	+				-0.3
1,961,353	+				-1.3
1,961,383	-				-0.1
1,961,428	-		CCNA_01832	0.10	-0.2
1,961,432	-		CCNA_01832	0.10	-1.4
1,961,455	+		CCNA_01832	0.11	+1.2
1,961,512	-		CCNA_01832	0.14	+0.5
1,961,512	-		CCNA_01832	0.14	+0.5
1,961,521	+		CCNA_01832	0.14	-0.3
1,961,559	+		CCNA_01832	0.16	-0.9
1,961,559	+		CCNA_01832	0.16	+0.2
1,961,566	+		CCNA_01832	0.16	-0.4
1,961,567	-		CCNA_01832	0.16	-0.1
1,961,612	+		CCNA_01832	0.18	-1.5
1,961,620	-		CCNA_01832	0.18	+0.1
1,961,623	+		CCNA_01832	0.19	+2.2
1,961,631	-		CCNA_01832	0.19	-0.1
1,961,682	-		CCNA_01832	0.21	-0.4
1,961,691	-		CCNA_01832	0.22	-0.3
1,961,769	-		CCNA_01832	0.25	-0.9
1,961,790	+		CCNA_01832	0.26	-0.1
1,961,790	+		CCNA_01832	0.26	+1.9
1,961,790	+		CCNA_01832	0.26	-0.2
1,961,790	+		CCNA_01832	0.26	+0.0
1,961,790	+		CCNA_01832	0.26	+0.2
1,961,790	+		CCNA_01832	0.26	-2.3
1,961,790	+		CCNA_01832	0.26	-1.1
1,961,790	+		CCNA_01832	0.26	-0.3
1,961,790	+		CCNA_01832	0.26	-0.7
1,961,790	+		CCNA_01832	0.26	+1.7
1,961,790	+		CCNA_01832	0.26	-0.3
1,961,790	+		CCNA_01832	0.26	-1.4
1,961,790	+		CCNA_01832	0.26	-0.6
1,961,797	+		CCNA_01832	0.26	-0.7
1,961,798	-		CCNA_01832	0.26	+1.3
1,961,798	-		CCNA_01832	0.26	-1.4
1,961,798	-		CCNA_01832	0.26	+2.3
1,961,798	-		CCNA_01832	0.26	-1.0
1,961,798	-		CCNA_01832	0.26	+0.4
1,961,798	-		CCNA_01832	0.26	+0.5
1,961,798	-		CCNA_01832	0.26	-0.9
1,961,798	-		CCNA_01832	0.26	-1.0
1,961,798	-		CCNA_01832	0.26	-0.2
1,961,798	-		CCNA_01832	0.26	-0.5
1,961,798	-		CCNA_01832	0.26	+1.3
1,961,891	+		CCNA_01832	0.30	+1.1
1,961,899	-		CCNA_01832	0.31	-0.4
1,961,913	+		CCNA_01832	0.31	-0.6
1,961,914	+		CCNA_01832	0.31	+1.1
1,961,914	-		CCNA_01832	0.31	-0.4
1,961,959	+		CCNA_01832	0.33	-1.1
1,961,979	+		CCNA_01832	0.34	-0.3
1,961,979	+		CCNA_01832	0.34	+0.1
1,961,987	-		CCNA_01832	0.35	-0.5
1,962,023	-		CCNA_01832	0.36	+0.2
1,962,027	+		CCNA_01832	0.36	-1.8
1,962,027	+		CCNA_01832	0.36	-1.4
1,962,046	+		CCNA_01832	0.37	+0.9
1,962,062	+		CCNA_01832	0.38	-1.6
1,962,076	+		CCNA_01832	0.38	+0.5
1,962,079	+		CCNA_01832	0.39	-0.8
1,962,087	-		CCNA_01832	0.39	+0.7
1,962,098	-		CCNA_01832	0.39	-0.8
1,962,113	-		CCNA_01832	0.40	+0.7
1,962,147	+		CCNA_01832	0.42	+0.7
1,962,163	+		CCNA_01832	0.42	+0.5