Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01367

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
1,481,404	-		CCNA_01365	0.40	+1.2
1,481,433	-		CCNA_01365	0.46	+0.3
1,481,502	-		CCNA_01365	0.59	-0.3
1,481,511	+		CCNA_01365	0.61	-0.5
1,481,514	-		CCNA_01365	0.61	-0.4
1,481,518	+		CCNA_01365	0.62	-0.4
1,481,519	-		CCNA_01365	0.62	+1.0
1,481,519	-		CCNA_01365	0.62	+2.6
1,481,519	-		CCNA_01365	0.62	+0.6
1,481,526	-		CCNA_01365	0.64	+0.9
1,481,526	-		CCNA_01365	0.64	+1.3
1,481,526	-		CCNA_01365	0.64	+2.0
1,481,526	-		CCNA_01365	0.64	+0.8
1,481,526	-		CCNA_01365	0.64	+0.7
1,481,547	+		CCNA_01365	0.68	+0.6
1,481,555	-		CCNA_01365	0.69	+0.4
1,481,570	-		CCNA_01365	0.72	+1.5
1,481,570	-		CCNA_01365	0.72	+2.0
1,481,570	-				+1.2
1,481,609	+		CCNA_01365	0.80	-1.4
1,481,609	+		CCNA_01365	0.80	-0.2
1,481,609	+		CCNA_01365	0.80	-1.0
1,481,617	-		CCNA_01365	0.81	+0.3
1,481,637	+		CCNA_01365	0.85	-0.6
1,481,652	-		CCNA_01365	0.88	+1.4
1,481,652	-		CCNA_01365	0.88	-0.3
1,481,671	+				+0.0
1,481,679	-				-0.3
1,481,710	-				+1.4
1,481,726	-				+2.4
1,481,996	-				+0.2
1,482,010	-				-0.1
1,482,021	-				+0.1
1,482,029	+				-0.4
1,482,061	+		CCNA_01366	0.18	-0.3
1,482,061	+		CCNA_01366	0.18	-1.9
1,482,116	-		CCNA_01366	0.43	-0.7
1,482,127	-		CCNA_01366	0.48	+0.2
1,482,167	+		CCNA_01366	0.65	-0.5
1,482,184	-		CCNA_01366	0.73	+0.1
1,482,184	-		CCNA_01366	0.73	-0.5
1,482,193	+		CCNA_01366	0.77	+0.5
1,482,201	-		CCNA_01366	0.80	+0.6
1,482,238	+				-0.0
1,482,253	-				-0.3
1,482,254	-				-0.8
1,482,266	+				-0.5
1,482,274	-				+1.8
1,482,281	+				-1.0
1,482,281	+				+1.4
1,482,290	-				-0.5
1,482,299	+				+0.7
1,482,307	-				-2.4
1,482,316	+				-0.7
1,482,316	+				-0.3
1,482,316	+				+1.0
1,482,346	+				+1.2
1,482,346	+				+2.6
1,482,346	+				+0.5
1,482,346	+				+1.2
1,482,422	-		CCNA_01367	0.10	+1.2
1,482,495	+		CCNA_01367	0.18	+1.0
1,482,502	+		CCNA_01367	0.19	-0.1
1,482,525	+		CCNA_01367	0.22	-1.0
1,482,527	+		CCNA_01367	0.22	+0.6
1,482,533	-		CCNA_01367	0.23	-1.0
1,482,535	-		CCNA_01367	0.23	-1.5
1,482,605	+		CCNA_01367	0.31	+2.4
1,482,619	+		CCNA_01367	0.32	+0.4
1,482,619	+		CCNA_01367	0.32	-1.0
1,482,619	+		CCNA_01367	0.32	+1.0
1,482,619	+		CCNA_01367	0.32	-0.2
1,482,619	+		CCNA_01367	0.32	-0.2
1,482,619	+		CCNA_01367	0.32	+0.9
1,482,627	-		CCNA_01367	0.33	+0.3
1,482,683	-		CCNA_01367	0.40	-0.9
1,482,684	-		CCNA_01367	0.40	+0.5
1,482,684	-		CCNA_01367	0.40	+1.6
1,482,684	-		CCNA_01367	0.40	-0.8
1,482,732	+		CCNA_01367	0.45	+0.0
1,482,745	+		CCNA_01367	0.46	+1.1
1,482,811	-		CCNA_01367	0.54	-0.2
1,482,813	+		CCNA_01367	0.54	+0.3
1,482,826	+		CCNA_01367	0.56	-0.5
1,482,834	-		CCNA_01367	0.56	+2.6
1,482,834	-		CCNA_01367	0.56	+2.8
1,482,836	+		CCNA_01367	0.57	-1.8
1,482,836	+		CCNA_01367	0.57	+0.9
1,482,844	-		CCNA_01367	0.58	+1.2
1,482,844	-		CCNA_01367	0.58	-0.3
1,482,845	+		CCNA_01367	0.58	+1.9
1,482,845	+		CCNA_01367	0.58	-1.2
1,482,853	-		CCNA_01367	0.59	+1.5
1,482,888	+		CCNA_01367	0.63	+0.2
1,482,888	+		CCNA_01367	0.63	+0.5
1,482,895	+		CCNA_01367	0.63	+1.9
1,482,896	-		CCNA_01367	0.63	+0.1
1,482,956	+		CCNA_01367	0.70	+1.1
1,482,976	+		CCNA_01367	0.72	+0.2
1,483,002	+		CCNA_01367	0.75	+0.9
1,483,033	+		CCNA_01367	0.79	+1.5
1,483,042	+		CCNA_01367	0.80	+1.8
1,483,042	+		CCNA_01367	0.80	-0.6
1,483,050	-		CCNA_01367	0.81	-1.6
1,483,050	-		CCNA_01367	0.81	-1.5
1,483,080	+		CCNA_01367	0.84	-0.8
1,483,080	+		CCNA_01367	0.84	+1.3
1,483,085	+		CCNA_01367	0.85	+1.3
1,483,135	+				+0.5
1,483,143	-				+0.4
1,483,154	+				+0.1
1,483,191	-				-0.6
1,483,194	+				-0.3
1,483,194	+				+1.3
1,483,194	+				-0.0
1,483,194	+				-1.1
1,483,194	+				-0.1
1,483,194	+				-0.3
1,483,202	-				+0.3
1,483,202	-				+0.2
1,483,202	-				-1.7
1,483,202	-				-1.4
1,483,202	-				-1.6
1,483,308	+				+1.0
1,483,326	+				+1.2
1,483,349	-				+2.1
1,483,454	-				-0.2
1,483,464	+				-1.3
1,483,468	+				-0.8
1,483,472	-				-1.8
1,483,503	-		CCNA_01368	0.11	+1.0
1,483,564	-		CCNA_01368	0.16	-1.9
1,483,568	+		CCNA_01368	0.16	+1.1
1,483,574	+		CCNA_01368	0.17	-0.8
1,483,581	+		CCNA_01368	0.17	+1.5
1,483,581	-		CCNA_01368	0.17	-1.1
1,483,581	-		CCNA_01368	0.17	-2.2
1,483,589	-		CCNA_01368	0.18	-2.0
1,483,600	-		CCNA_01368	0.19	-0.5
1,483,672	+		CCNA_01368	0.25	+1.0
1,483,680	+		CCNA_01368	0.25	+1.0
1,483,695	+		CCNA_01368	0.27	-0.5
1,483,714	+		CCNA_01368	0.28	+0.3
1,483,727	-		CCNA_01368	0.29	+0.4
1,483,738	-		CCNA_01368	0.30	+0.4
1,483,751	-		CCNA_01368	0.31	+0.2
1,483,758	-		CCNA_01368	0.32	+0.1
1,483,758	-		CCNA_01368	0.32	-0.9
1,483,772	+		CCNA_01368	0.33	+1.2
1,483,789	+		CCNA_01368	0.34	+0.5
1,483,795	+		CCNA_01368	0.35	+0.4
1,483,803	-		CCNA_01368	0.35	-0.3
1,483,803	-		CCNA_01368	0.35	+0.0
1,483,803	-		CCNA_01368	0.35	+0.4
1,483,803	-		CCNA_01368	0.35	-0.6
1,483,803	-		CCNA_01368	0.35	-2.4
1,483,832	+		CCNA_01368	0.38	+1.8
1,483,840	-		CCNA_01368	0.38	-0.3
1,483,841	-		CCNA_01368	0.39	-0.1
1,483,843	+		CCNA_01368	0.39	+1.2
1,483,843	+		CCNA_01368	0.39	+1.6
1,483,850	+		CCNA_01368	0.39	+1.9
1,483,867	-		CCNA_01368	0.41	-1.4
1,483,869	+		CCNA_01368	0.41	+0.0
1,483,874	+		CCNA_01368	0.41	+0.4
1,483,902	-		CCNA_01368	0.44	+1.2
1,483,903	+		CCNA_01368	0.44	-0.4
1,483,903	+		CCNA_01368	0.44	+0.3
1,483,916	-		CCNA_01368	0.45	-0.6
1,484,017	+		CCNA_01368	0.53	+0.5
1,484,017	+		CCNA_01368	0.53	+0.1
1,484,034	-		CCNA_01368	0.54	-1.5
1,484,041	+		CCNA_01368	0.55	+0.2
1,484,041	+		CCNA_01368	0.55	-0.5
1,484,072	+		CCNA_01368	0.58	-1.4
1,484,083	+		CCNA_01368	0.58	+1.0
1,484,084	+		CCNA_01368	0.59	-0.1
1,484,122	+		CCNA_01368	0.62	+0.7
1,484,136	+		CCNA_01368	0.63	-0.7