Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01111

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
1,216,033	+		CCNA_01110	0.28	+1.8
1,216,047	+		CCNA_01110	0.29	+1.6
1,216,055	-		CCNA_01110	0.30	-2.3
1,216,079	+		CCNA_01110	0.33	-0.1
1,216,098	-		CCNA_01110	0.35	+0.3
1,216,157	-		CCNA_01110	0.41	-0.3
1,216,323	+		CCNA_01110	0.59	+2.0
1,216,333	-		CCNA_01110	0.60	-2.5
1,216,362	-		CCNA_01110	0.63	+0.5
1,216,362	-		CCNA_01110	0.63	+0.6
1,216,401	+		CCNA_01110	0.68	+0.9
1,216,401	+		CCNA_01110	0.68	+1.2
1,216,409	-		CCNA_01110	0.69	+0.2
1,216,409	-		CCNA_01110	0.69	-1.6
1,216,443	-		CCNA_01110	0.72	+2.6
1,216,460	+		CCNA_01110	0.74	+0.3
1,216,475	+		CCNA_01110	0.76	+1.2
1,216,485	+		CCNA_01110	0.77	+1.0
1,216,485	+		CCNA_01110	0.77	+1.3
1,216,485	+		CCNA_01110	0.77	+1.2
1,216,485	+		CCNA_01110	0.77	+0.0
1,216,485	+		CCNA_01110	0.77	+0.6
1,216,493	-		CCNA_01110	0.78	+0.2
1,216,506	-		CCNA_01110	0.79	-1.2
1,216,520	+		CCNA_01110	0.80	+0.2
1,216,520	+		CCNA_01110	0.80	+1.6
1,216,520	+		CCNA_01110	0.80	+0.3
1,216,520	+		CCNA_01110	0.80	+0.5
1,216,520	+		CCNA_01110	0.80	-2.7
1,216,520	+		CCNA_01110	0.80	+1.1
1,216,520	+		CCNA_01110	0.80	+1.7
1,216,528	-		CCNA_01110	0.81	+1.5
1,216,528	-		CCNA_01110	0.81	-0.9
1,216,528	-		CCNA_01110	0.81	-0.4
1,216,528	-		CCNA_01110	0.81	+2.0
1,216,541	-		CCNA_01110	0.83	+0.8
1,216,563	-		CCNA_01110	0.85	+0.7
1,216,601	+		CCNA_01110	0.89	+1.0
1,216,601	+		CCNA_01110	0.89	+1.1
1,216,601	+		CCNA_01110	0.89	+0.9
1,216,628	-				-2.0
1,216,680	+				+1.8
1,216,689	+				+1.2
1,216,689	+				+1.4
1,216,689	+				+3.6
1,216,689	+				+0.6
1,216,689	+				+1.3
1,216,689	+				+0.5
1,216,696	+				-1.6
1,216,697	-				-3.0
1,216,697	-				+1.6
1,216,697	-				-0.6
1,216,697	-				+0.5
1,216,788	-				-0.5
1,216,802	+				+0.4
1,216,815	+				-0.7
1,216,851	+				+0.3
1,216,863	+				-0.1
1,216,871	-				-0.1
1,217,009	+				-0.2
1,217,009	+				+1.2
1,217,009	+				+0.6
1,217,009	+				+1.5
1,217,017	-				-0.4
1,217,041	+				+1.3
1,217,051	+				-1.6
1,217,051	+				-0.5
1,217,073	-		CCNA_01111	0.12	-0.5
1,217,156	+		CCNA_01111	0.35	-2.5
1,217,200	+		CCNA_01111	0.47	+2.6
1,217,219	-		CCNA_01111	0.52	-0.9
1,217,220	+		CCNA_01111	0.52	-2.1
1,217,220	+		CCNA_01111	0.52	-2.0
1,217,220	+		CCNA_01111	0.52	-1.2
1,217,223	-		CCNA_01111	0.53	+0.1
1,217,223	-		CCNA_01111	0.53	+0.1
1,217,225	+		CCNA_01111	0.53	-2.2
1,217,225	+		CCNA_01111	0.53	-0.2
1,217,228	-		CCNA_01111	0.54	-1.6
1,217,322	+		CCNA_01111	0.80	-1.3
1,217,323	+		CCNA_01111	0.80	+0.7
1,217,346	+		CCNA_01111	0.86	-2.3
1,217,346	+		CCNA_01111	0.86	-0.4
1,217,354	-		CCNA_01111	0.88	-2.0
1,217,360	+				+0.7
1,217,437	-				-0.3
1,217,473	+		CCNA_01112	0.10	+1.0
1,217,486	-		CCNA_01112	0.12	+0.7
1,217,499	-		CCNA_01112	0.14	+2.2
1,217,523	+		CCNA_01112	0.17	+0.7
1,217,567	-		CCNA_01112	0.23	-0.7
1,217,582	+		CCNA_01112	0.25	-1.2
1,217,582	+		CCNA_01112	0.25	-0.4
1,217,582	+		CCNA_01112	0.25	-1.6
1,217,590	-		CCNA_01112	0.26	+0.2
1,217,590	-		CCNA_01112	0.26	-0.5
1,217,608	-				+2.6
1,217,609	-		CCNA_01112	0.29	-1.1
1,217,609	-		CCNA_01112	0.29	+0.2
1,217,783	-		CCNA_01112	0.53	+0.3
1,217,793	-		CCNA_01112	0.54	+1.0
1,217,793	-		CCNA_01112	0.54	-0.7
1,217,798	-		CCNA_01112	0.55	-0.5
1,217,842	-		CCNA_01112	0.61	+0.3
1,217,915	-		CCNA_01112	0.71	-1.1
1,217,945	+		CCNA_01112	0.75	+0.2
1,217,953	-		CCNA_01112	0.76	+0.4
1,217,979	+		CCNA_01112	0.79	-1.3
1,217,979	+		CCNA_01112	0.79	-0.7
1,217,979	+		CCNA_01112	0.79	-2.2
1,217,987	-		CCNA_01112	0.80	-2.4
1,217,987	-		CCNA_01112	0.80	-0.7
1,217,997	-		CCNA_01112	0.82	-0.6
1,218,015	-		CCNA_01112	0.84	+1.0
1,218,186	+				+0.5
1,218,196	+				-0.8
1,218,204	-				+0.2
1,218,216	-				-0.8
1,218,224	-				+0.7
1,218,242	+		CCNA_01113	0.11	-0.5
1,218,252	+		CCNA_01113	0.12	+0.8
1,218,252	+		CCNA_01113	0.12	-1.5
1,218,260	-		CCNA_01113	0.13	+0.5
1,218,260	-		CCNA_01113	0.13	+0.4
1,218,260	-		CCNA_01113	0.13	+1.1
1,218,260	-		CCNA_01113	0.13	+0.7
1,218,260	-		CCNA_01113	0.13	+0.2
1,218,260	-		CCNA_01113	0.13	+0.3
1,218,260	-		CCNA_01113	0.13	+0.4
1,218,260	-		CCNA_01113	0.13	+0.3
1,218,260	-		CCNA_01113	0.13	+0.5
1,218,260	-		CCNA_01113	0.13	+0.1
1,218,260	-		CCNA_01113	0.13	+1.0
1,218,279	+		CCNA_01113	0.15	-0.6
1,218,279	-		CCNA_01113	0.15	+2.5
1,218,284	+				+1.0
1,218,292	-		CCNA_01113	0.16	-0.5
1,218,299	+		CCNA_01113	0.17	-1.7
1,218,306	-		CCNA_01113	0.18	-0.3
1,218,306	-		CCNA_01113	0.18	+0.6
1,218,340	-		CCNA_01113	0.21	+0.4
1,218,342	+		CCNA_01113	0.21	-1.0
1,218,353	+		CCNA_01113	0.23	-0.3
1,218,353	+		CCNA_01113	0.23	+0.2
1,218,353	+		CCNA_01113	0.23	+1.3
1,218,353	+		CCNA_01113	0.23	+2.6
1,218,353	+		CCNA_01113	0.23	-1.1
1,218,353	+		CCNA_01113	0.23	-0.5
1,218,353	+		CCNA_01113	0.23	+0.0
1,218,353	+		CCNA_01113	0.23	+0.8
1,218,361	-		CCNA_01113	0.23	-0.3
1,218,361	-		CCNA_01113	0.23	+0.4
1,218,361	-		CCNA_01113	0.23	-0.2
1,218,361	-		CCNA_01113	0.23	-0.3
1,218,361	-		CCNA_01113	0.23	-0.6
1,218,361	-		CCNA_01113	0.23	+1.3
1,218,363	+		CCNA_01113	0.24	+3.1
1,218,363	+		CCNA_01113	0.24	+2.8
1,218,363	+		CCNA_01113	0.24	+3.4
1,218,363	+		CCNA_01113	0.24	+3.1
1,218,363	+		CCNA_01113	0.24	+2.9
1,218,363	+		CCNA_01113	0.24	+2.4
1,218,363	+		CCNA_01113	0.24	+2.4
1,218,363	+		CCNA_01113	0.24	+2.4
1,218,363	+		CCNA_01113	0.24	+3.2
1,218,363	+		CCNA_01113	0.24	+2.3
1,218,371	-		CCNA_01113	0.24	+2.0
1,218,371	-		CCNA_01113	0.24	-1.1
1,218,371	-		CCNA_01113	0.24	-0.4
1,218,395	-		CCNA_01113	0.27	+0.6