Experiment: PYE with nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00827 and CCNA_00828 are separated by 126 nucleotides CCNA_00828 and CCNA_00830 are separated by 306 nucleotides
CCNA_00827: CCNA_00827 - TonB-dependent receptor, at 888,079 to 891,006
_00827
CCNA_00828: CCNA_00828 - tryptophan halogenase, at 891,133 to 892,647
_00828
CCNA_00830: CCNA_00830 - beta-galactosidase, at 892,954 to 894,603
_00830
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 890.182 kb on + strand, within CCNA_00827 at 890.190 kb on - strand, within CCNA_00827 at 890.238 kb on + strand, within CCNA_00827 at 890.239 kb on - strand, within CCNA_00827 at 890.246 kb on - strand, within CCNA_00827 at 890.246 kb on - strand, within CCNA_00827 at 890.279 kb on - strand, within CCNA_00827 at 890.290 kb on - strand, within CCNA_00827 at 890.302 kb on + strand, within CCNA_00827 at 890.305 kb on - strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.307 kb on + strand, within CCNA_00827 at 890.311 kb on + strand, within CCNA_00827 at 890.314 kb on - strand, within CCNA_00827 at 890.314 kb on - strand, within CCNA_00827 at 890.314 kb on - strand, within CCNA_00827 at 890.315 kb on - strand, within CCNA_00827 at 890.316 kb on + strand, within CCNA_00827 at 890.331 kb on - strand, within CCNA_00827 at 890.331 kb on - strand, within CCNA_00827 at 890.370 kb on - strand, within CCNA_00827 at 890.416 kb on - strand, within CCNA_00827 at 890.441 kb on + strand, within CCNA_00827 at 890.465 kb on + strand, within CCNA_00827 at 890.490 kb on + strand, within CCNA_00827 at 890.509 kb on - strand, within CCNA_00827 at 890.600 kb on + strand, within CCNA_00827 at 890.600 kb on + strand, within CCNA_00827 at 890.608 kb on - strand, within CCNA_00827 at 890.609 kb on - strand, within CCNA_00827 at 890.616 kb on - strand, within CCNA_00827 at 890.650 kb on + strand, within CCNA_00827 at 890.701 kb on + strand, within CCNA_00827 at 890.701 kb on + strand, within CCNA_00827 at 890.705 kb on + strand, within CCNA_00827 at 890.705 kb on + strand, within CCNA_00827 at 890.709 kb on - strand, within CCNA_00827 at 890.709 kb on - strand, within CCNA_00827 at 890.712 kb on - strand, within CCNA_00827 at 890.712 kb on - strand, within CCNA_00827 at 890.716 kb on + strand at 890.801 kb on + strand at 890.818 kb on + strand at 890.836 kb on - strand at 890.845 kb on + strand at 890.853 kb on - strand at 890.892 kb on + strand at 890.898 kb on + strand at 890.900 kb on - strand at 890.900 kb on - strand at 890.901 kb on - strand at 890.918 kb on - strand at 890.918 kb on - strand at 890.938 kb on + strand at 890.938 kb on + strand at 890.986 kb on + strand at 890.991 kb on + strand at 891.000 kb on + strand at 891.000 kb on + strand at 891.000 kb on + strand at 891.000 kb on + strand at 891.007 kb on + strand at 891.019 kb on + strand at 891.025 kb on - strand at 891.027 kb on + strand at 891.027 kb on + strand at 891.030 kb on - strand at 891.030 kb on - strand at 891.074 kb on - strand at 891.094 kb on + strand at 891.102 kb on + strand at 891.102 kb on - strand at 891.102 kb on - strand at 891.102 kb on - strand at 891.102 kb on - strand at 891.110 kb on - strand at 891.110 kb on - strand at 891.179 kb on + strand at 891.184 kb on + strand at 891.217 kb on + strand at 891.236 kb on + strand at 891.244 kb on - strand at 891.245 kb on - strand at 891.245 kb on - strand at 891.275 kb on + strand at 891.317 kb on + strand, within CCNA_00828 at 891.325 kb on - strand, within CCNA_00828 at 891.392 kb on + strand, within CCNA_00828 at 891.417 kb on + strand, within CCNA_00828 at 891.434 kb on - strand, within CCNA_00828 at 891.437 kb on + strand, within CCNA_00828 at 891.440 kb on - strand, within CCNA_00828 at 891.456 kb on + strand, within CCNA_00828 at 891.471 kb on + strand, within CCNA_00828 at 891.496 kb on + strand, within CCNA_00828 at 891.517 kb on + strand, within CCNA_00828 at 891.543 kb on - strand, within CCNA_00828 at 891.595 kb on + strand, within CCNA_00828 at 891.595 kb on + strand, within CCNA_00828 at 891.595 kb on + strand, within CCNA_00828 at 891.600 kb on + strand, within CCNA_00828 at 891.603 kb on - strand, within CCNA_00828 at 891.609 kb on - strand, within CCNA_00828 at 891.622 kb on - strand, within CCNA_00828 at 891.643 kb on - strand, within CCNA_00828 at 891.708 kb on - strand, within CCNA_00828 at 891.739 kb on + strand, within CCNA_00828 at 891.812 kb on + strand, within CCNA_00828 at 891.907 kb on + strand, within CCNA_00828 at 891.907 kb on + strand, within CCNA_00828 at 891.956 kb on + strand, within CCNA_00828 at 891.973 kb on + strand, within CCNA_00828 at 891.980 kb on + strand, within CCNA_00828 at 891.980 kb on + strand, within CCNA_00828 at 891.981 kb on - strand, within CCNA_00828 at 891.985 kb on + strand, within CCNA_00828 at 891.985 kb on + strand, within CCNA_00828 at 891.985 kb on + strand, within CCNA_00828 at 891.985 kb on + strand, within CCNA_00828 at 891.986 kb on - strand, within CCNA_00828 at 891.993 kb on - strand, within CCNA_00828 at 891.993 kb on - strand, within CCNA_00828 at 891.993 kb on - strand, within CCNA_00828 at 891.993 kb on - strand, within CCNA_00828 at 892.005 kb on - strand, within CCNA_00828 at 892.119 kb on + strand, within CCNA_00828 at 892.126 kb on + strand, within CCNA_00828 at 892.131 kb on + strand, within CCNA_00828 at 892.134 kb on - strand, within CCNA_00828 at 892.148 kb on + strand, within CCNA_00828 at 892.172 kb on + strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.182 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.191 kb on - strand, within CCNA_00828 at 892.191 kb on - strand, within CCNA_00828 at 892.191 kb on - strand, within CCNA_00828 at 892.191 kb on - strand, within CCNA_00828 at 892.191 kb on - strand, within CCNA_00828 at 892.229 kb on + strand, within CCNA_00828 at 892.229 kb on + strand, within CCNA_00828 at 892.252 kb on + strand, within CCNA_00828 at 892.262 kb on + strand, within CCNA_00828 at 892.285 kb on - strand, within CCNA_00828 at 892.306 kb on + strand, within CCNA_00828 at 892.311 kb on + strand, within CCNA_00828 at 892.311 kb on - strand, within CCNA_00828 at 892.341 kb on + strand, within CCNA_00828 at 892.369 kb on + strand, within CCNA_00828 at 892.369 kb on + strand, within CCNA_00828 at 892.369 kb on - strand, within CCNA_00828 at 892.391 kb on + strand, within CCNA_00828 at 892.399 kb on - strand, within CCNA_00828 at 892.421 kb on - strand, within CCNA_00828 at 892.443 kb on - strand, within CCNA_00828 at 892.448 kb on - strand, within CCNA_00828 at 892.458 kb on - strand, within CCNA_00828 at 892.485 kb on - strand, within CCNA_00828 at 892.514 kb on - strand at 892.551 kb on + strand at 892.561 kb on + strand at 892.561 kb on + strand at 892.569 kb on - strand at 892.569 kb on - strand at 892.574 kb on - strand at 892.606 kb on + strand at 892.606 kb on + strand at 892.629 kb on + strand at 892.636 kb on + strand at 892.636 kb on + strand at 892.644 kb on - strand at 892.644 kb on - strand at 892.649 kb on - strand at 892.655 kb on + strand at 892.660 kb on + strand at 892.678 kb on - strand at 892.721 kb on + strand at 892.733 kb on - strand at 892.743 kb on + strand at 892.771 kb on + strand at 892.797 kb on + strand at 892.799 kb on + strand at 892.799 kb on + strand at 892.799 kb on + strand at 892.816 kb on + strand at 892.824 kb on - strand at 892.874 kb on + strand at 892.882 kb on - strand at 892.882 kb on - strand at 892.900 kb on - strand at 892.911 kb on + strand at 892.941 kb on - strand at 892.982 kb on + strand at 893.013 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.028 kb on + strand at 893.031 kb on - strand at 893.031 kb on - strand at 893.031 kb on - strand at 893.031 kb on - strand at 893.031 kb on - strand at 893.036 kb on + strand at 893.036 kb on - strand at 893.036 kb on - strand at 893.144 kb on - strand, within CCNA_00830 at 893.168 kb on + strand, within CCNA_00830 at 893.196 kb on + strand, within CCNA_00830 at 893.210 kb on - strand, within CCNA_00830 at 893.228 kb on + strand, within CCNA_00830 at 893.228 kb on + strand, within CCNA_00830 at 893.235 kb on - strand, within CCNA_00830 at 893.236 kb on - strand, within CCNA_00830 at 893.236 kb on - strand, within CCNA_00830 at 893.236 kb on - strand, within CCNA_00830 at 893.236 kb on - strand, within CCNA_00830 at 893.236 kb on - strand, within CCNA_00830 at 893.238 kb on + strand, within CCNA_00830 at 893.246 kb on - strand, within CCNA_00830 at 893.251 kb on - strand, within CCNA_00830 at 893.255 kb on - strand, within CCNA_00830 at 893.282 kb on - strand, within CCNA_00830 at 893.384 kb on - strand, within CCNA_00830 at 893.399 kb on + strand, within CCNA_00830 at 893.417 kb on - strand, within CCNA_00830 at 893.417 kb on - strand, within CCNA_00830 at 893.442 kb on - strand, within CCNA_00830 at 893.475 kb on + strand, within CCNA_00830 at 893.483 kb on - strand, within CCNA_00830 at 893.519 kb on - strand, within CCNA_00830 at 893.524 kb on + strand, within CCNA_00830 at 893.524 kb on + strand, within CCNA_00830 at 893.524 kb on + strand, within CCNA_00830 at 893.524 kb on + strand, within CCNA_00830 at 893.532 kb on - strand, within CCNA_00830 at 893.532 kb on - strand, within CCNA_00830 at 893.537 kb on + strand, within CCNA_00830 at 893.559 kb on - strand, within CCNA_00830 at 893.611 kb on + strand, within CCNA_00830 at 893.619 kb on - strand, within CCNA_00830 at 893.635 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.643 kb on - strand, within CCNA_00830
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM remove 890,182 + CCNA_00827 0.72 -1.2 890,190 - CCNA_00827 0.72 +0.2 890,238 + CCNA_00827 0.74 +1.3 890,239 - CCNA_00827 0.74 +0.1 890,246 - CCNA_00827 0.74 +2.6 890,246 - CCNA_00827 0.74 -0.6 890,279 - CCNA_00827 0.75 +1.2 890,290 - CCNA_00827 0.76 -0.5 890,302 + CCNA_00827 0.76 -0.2 890,305 - CCNA_00827 0.76 -0.3 890,306 + CCNA_00827 0.76 -1.1 890,306 + CCNA_00827 0.76 -2.4 890,306 + CCNA_00827 0.76 -1.7 890,306 + CCNA_00827 0.76 +0.3 890,306 + CCNA_00827 0.76 -1.1 890,306 + CCNA_00827 0.76 +2.6 890,307 + CCNA_00827 0.76 -3.0 890,311 + CCNA_00827 0.76 -0.6 890,314 - CCNA_00827 0.76 -1.0 890,314 - CCNA_00827 0.76 -0.6 890,314 - CCNA_00827 0.76 +0.3 890,315 - CCNA_00827 0.76 -1.1 890,316 + CCNA_00827 0.76 +0.6 890,331 - CCNA_00827 0.77 -0.6 890,331 - CCNA_00827 0.77 -1.6 890,370 - CCNA_00827 0.78 -1.7 890,416 - CCNA_00827 0.80 -0.4 890,441 + CCNA_00827 0.81 -1.5 890,465 + CCNA_00827 0.81 +0.0 890,490 + CCNA_00827 0.82 +0.3 890,509 - CCNA_00827 0.83 -0.2 890,600 + CCNA_00827 0.86 -0.4 890,600 + CCNA_00827 0.86 +0.3 890,608 - CCNA_00827 0.86 -1.8 890,609 - CCNA_00827 0.86 +0.2 890,616 - CCNA_00827 0.87 -1.0 890,650 + CCNA_00827 0.88 -0.7 890,701 + CCNA_00827 0.90 -0.9 890,701 + CCNA_00827 0.90 -0.5 890,705 + CCNA_00827 0.90 -1.0 890,705 + CCNA_00827 0.90 +1.0 890,709 - CCNA_00827 0.90 -0.2 890,709 - CCNA_00827 0.90 -0.2 890,712 - CCNA_00827 0.90 +1.6 890,712 - CCNA_00827 0.90 -0.6 890,716 + -0.6 890,801 + +0.9 890,818 + +0.5 890,836 - -0.9 890,845 + +0.0 890,853 - -0.9 890,892 + +0.0 890,898 + +0.3 890,900 - -0.7 890,900 - -1.3 890,901 - -0.4 890,918 - +0.4 890,918 - -1.2 890,938 + +0.6 890,938 + +1.6 890,986 + +0.7 890,991 + +0.2 891,000 + +0.3 891,000 + +0.2 891,000 + +0.4 891,000 + -0.6 891,007 + -0.9 891,019 + +0.3 891,025 - -0.6 891,027 + +1.3 891,027 + -0.3 891,030 - -0.9 891,030 - -0.9 891,074 - -0.0 891,094 + -0.1 891,102 + +0.6 891,102 - -0.2 891,102 - -0.3 891,102 - -0.3 891,102 - -1.5 891,110 - -0.4 891,110 - -1.4 891,179 + -0.5 891,184 + -1.1 891,217 + -1.0 891,236 + -1.4 891,244 - +0.4 891,245 - -0.0 891,245 - -0.9 891,275 + +1.1 891,317 + CCNA_00828 0.12 -0.4 891,325 - CCNA_00828 0.13 +1.3 891,392 + CCNA_00828 0.17 +0.8 891,417 + CCNA_00828 0.19 -1.7 891,434 - CCNA_00828 0.20 -2.2 891,437 + CCNA_00828 0.20 -1.0 891,440 - CCNA_00828 0.20 -1.3 891,456 + CCNA_00828 0.21 +1.1 891,471 + CCNA_00828 0.22 -0.7 891,496 + CCNA_00828 0.24 +0.3 891,517 + CCNA_00828 0.25 -0.4 891,543 - CCNA_00828 0.27 -0.9 891,595 + CCNA_00828 0.30 -1.3 891,595 + CCNA_00828 0.30 -0.5 891,595 + CCNA_00828 0.30 -1.7 891,600 + CCNA_00828 0.31 -0.0 891,603 - CCNA_00828 0.31 +0.3 891,609 - CCNA_00828 0.31 +0.6 891,622 - CCNA_00828 0.32 -0.6 891,643 - CCNA_00828 0.34 -1.3 891,708 - CCNA_00828 0.38 +0.8 891,739 + CCNA_00828 0.40 -0.4 891,812 + CCNA_00828 0.45 -1.0 891,907 + CCNA_00828 0.51 -2.3 891,907 + CCNA_00828 0.51 -0.6 891,956 + CCNA_00828 0.54 +1.0 891,973 + CCNA_00828 0.55 -2.3 891,980 + CCNA_00828 0.56 -0.2 891,980 + CCNA_00828 0.56 +0.4 891,981 - CCNA_00828 0.56 +0.8 891,985 + CCNA_00828 0.56 -1.1 891,985 + CCNA_00828 0.56 -2.3 891,985 + CCNA_00828 0.56 -0.4 891,985 + CCNA_00828 0.56 -0.4 891,986 - CCNA_00828 0.56 -1.5 891,993 - CCNA_00828 0.57 -0.7 891,993 - CCNA_00828 0.57 +1.6 891,993 - CCNA_00828 0.57 -0.6 891,993 - CCNA_00828 0.57 -1.4 892,005 - CCNA_00828 0.58 -1.8 892,119 + CCNA_00828 0.65 +0.6 892,126 + CCNA_00828 0.66 -1.1 892,131 + CCNA_00828 0.66 +0.6 892,134 - CCNA_00828 0.66 +0.1 892,148 + CCNA_00828 0.67 -1.1 892,172 + CCNA_00828 0.69 -1.2 892,180 - CCNA_00828 0.69 +0.5 892,180 - CCNA_00828 0.69 +1.2 892,180 - CCNA_00828 0.69 -0.9 892,180 - CCNA_00828 0.69 +0.4 892,180 - CCNA_00828 0.69 -0.1 892,180 - CCNA_00828 0.69 +2.0 892,182 + CCNA_00828 0.69 -2.3 892,183 + CCNA_00828 0.69 -1.1 892,183 + CCNA_00828 0.69 -1.7 892,183 + CCNA_00828 0.69 -0.2 892,183 + CCNA_00828 0.69 -1.7 892,183 + CCNA_00828 0.69 -0.5 892,183 + CCNA_00828 0.69 +0.6 892,183 + CCNA_00828 0.69 -0.5 892,191 - CCNA_00828 0.70 -1.6 892,191 - CCNA_00828 0.70 -1.0 892,191 - CCNA_00828 0.70 -0.5 892,191 - CCNA_00828 0.70 +1.3 892,191 - CCNA_00828 0.70 -1.1 892,229 + CCNA_00828 0.72 -0.2 892,229 + CCNA_00828 0.72 -2.1 892,252 + CCNA_00828 0.74 -1.7 892,262 + CCNA_00828 0.75 -1.6 892,285 - CCNA_00828 0.76 -2.4 892,306 + CCNA_00828 0.77 -0.2 892,311 + CCNA_00828 0.78 -2.4 892,311 - CCNA_00828 0.78 -1.6 892,341 + CCNA_00828 0.80 -1.3 892,369 + CCNA_00828 0.82 -0.5 892,369 + CCNA_00828 0.82 -2.2 892,369 - CCNA_00828 0.82 -1.3 892,391 + CCNA_00828 0.83 +0.4 892,399 - CCNA_00828 0.84 +0.9 892,421 - CCNA_00828 0.85 +0.1 892,443 - CCNA_00828 0.86 -0.6 892,448 - CCNA_00828 0.87 -1.0 892,458 - CCNA_00828 0.87 +0.0 892,485 - CCNA_00828 0.89 +0.3 892,514 - -0.3 892,551 + -1.2 892,561 + -1.1 892,561 + +0.0 892,569 - +0.5 892,569 - +0.8 892,574 - +0.2 892,606 + -2.3 892,606 + -1.2 892,629 + +0.3 892,636 + -0.3 892,636 + +1.6 892,644 - +0.3 892,644 - -1.4 892,649 - -1.2 892,655 + -1.3 892,660 + -1.6 892,678 - +0.1 892,721 + +0.8 892,733 - -2.3 892,743 + +1.3 892,771 + +0.5 892,797 + +1.0 892,799 + +3.3 892,799 + +0.5 892,799 + +0.5 892,816 + +0.9 892,824 - -0.8 892,874 + -0.1 892,882 - -0.4 892,882 - -3.2 892,900 - -0.5 892,911 + -0.2 892,941 - +0.1 892,982 + +0.1 893,013 + -0.1 893,023 + -1.6 893,023 + -0.7 893,023 + -3.0 893,028 + +0.6 893,031 - -1.0 893,031 - -1.5 893,031 - -0.8 893,031 - -0.5 893,031 - +0.8 893,036 + -2.1 893,036 - +0.7 893,036 - -0.2 893,144 - CCNA_00830 0.12 -0.6 893,168 + CCNA_00830 0.13 -1.6 893,196 + CCNA_00830 0.15 +0.4 893,210 - CCNA_00830 0.16 -0.9 893,228 + CCNA_00830 0.17 +1.6 893,228 + CCNA_00830 0.17 -1.0 893,235 - CCNA_00830 0.17 -1.3 893,236 - CCNA_00830 0.17 +2.4 893,236 - CCNA_00830 0.17 -1.6 893,236 - CCNA_00830 0.17 +0.2 893,236 - CCNA_00830 0.17 +1.6 893,236 - CCNA_00830 0.17 -1.6 893,238 + CCNA_00830 0.17 -1.8 893,246 - CCNA_00830 0.18 +1.2 893,251 - CCNA_00830 0.18 -2.4 893,255 - CCNA_00830 0.18 +1.0 893,282 - CCNA_00830 0.20 -1.0 893,384 - CCNA_00830 0.26 +0.3 893,399 + CCNA_00830 0.27 -0.1 893,417 - CCNA_00830 0.28 -3.0 893,417 - CCNA_00830 0.28 -2.7 893,442 - CCNA_00830 0.30 -0.3 893,475 + CCNA_00830 0.32 -2.1 893,483 - CCNA_00830 0.32 +3.6 893,519 - CCNA_00830 0.34 -2.6 893,524 + CCNA_00830 0.35 -0.4 893,524 + CCNA_00830 0.35 -0.7 893,524 + CCNA_00830 0.35 -0.6 893,524 + CCNA_00830 0.35 -0.1 893,532 - CCNA_00830 0.35 -0.7 893,532 - CCNA_00830 0.35 -0.9 893,537 + CCNA_00830 0.35 -1.9 893,559 - CCNA_00830 0.37 +0.0 893,611 + CCNA_00830 0.40 +1.0 893,619 - CCNA_00830 0.40 -0.2 893,635 + CCNA_00830 0.41 -0.6 893,640 + CCNA_00830 0.42 -1.0 893,640 + CCNA_00830 0.42 +0.4 893,640 + CCNA_00830 0.42 -0.4 893,640 + CCNA_00830 0.42 +1.6 893,640 + CCNA_00830 0.42 -0.2 893,640 + CCNA_00830 0.42 -1.8 893,640 + CCNA_00830 0.42 -1.3 893,643 - CCNA_00830 0.42 -0.8
Or see this region's nucleotide sequence