Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00752

Experiment: PYE with nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00751 and CCNA_00752 are separated by 150 nucleotidesCCNA_00752 and CCNA_00753 are separated by 137 nucleotides CCNA_00751: CCNA_00751 - hypothetical protein, at 808,992 to 810,233 _00751 CCNA_00752: CCNA_00752 - 3-hydroxybutyryl-CoA dehydrogenase, at 810,384 to 811,262 _00752 CCNA_00753: CCNA_00753 - lysine 2,3-aminomutase, at 811,400 to 812,437 _00753 Position (kb) 810 811 812Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 809.390 kb on + strand, within CCNA_00751at 809.398 kb on - strand, within CCNA_00751at 809.413 kb on + strand, within CCNA_00751at 809.413 kb on + strand, within CCNA_00751at 809.418 kb on + strand, within CCNA_00751at 809.418 kb on + strand, within CCNA_00751at 809.418 kb on + strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.426 kb on - strand, within CCNA_00751at 809.426 kb on - strand, within CCNA_00751at 809.431 kb on - strand, within CCNA_00751at 809.431 kb on - strand, within CCNA_00751at 809.455 kb on - strand, within CCNA_00751at 809.458 kb on + strand, within CCNA_00751at 809.458 kb on + strand, within CCNA_00751at 809.472 kb on - strand, within CCNA_00751at 809.472 kb on - strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.496 kb on + strand, within CCNA_00751at 809.499 kb on - strand, within CCNA_00751at 809.499 kb on - strand, within CCNA_00751at 809.501 kb on + strand, within CCNA_00751at 809.516 kb on + strand, within CCNA_00751at 809.599 kb on + strand, within CCNA_00751at 809.617 kb on - strand, within CCNA_00751at 809.642 kb on + strand, within CCNA_00751at 809.648 kb on + strand, within CCNA_00751at 809.648 kb on + strand, within CCNA_00751at 809.656 kb on - strand, within CCNA_00751at 809.741 kb on - strand, within CCNA_00751at 809.759 kb on - strand, within CCNA_00751at 809.765 kb on + strand, within CCNA_00751at 809.765 kb on + strand, within CCNA_00751at 809.814 kb on + strand, within CCNA_00751at 809.829 kb on + strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.871 kb on + strand, within CCNA_00751at 809.923 kb on - strand, within CCNA_00751at 809.930 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.023 kb on - strand, within CCNA_00751at 810.023 kb on - strand, within CCNA_00751at 810.024 kb on - strand, within CCNA_00751at 810.024 kb on - strand, within CCNA_00751at 810.024 kb on - strand, within CCNA_00751at 810.065 kb on - strand, within CCNA_00751at 810.071 kb on - strand, within CCNA_00751at 810.081 kb on + strand, within CCNA_00751at 810.091 kb on + strand, within CCNA_00751at 810.123 kb on - strandat 810.133 kb on - strandat 810.171 kb on - strandat 810.189 kb on - strandat 810.195 kb on + strandat 810.195 kb on + strandat 810.203 kb on - strandat 810.203 kb on - strandat 810.237 kb on - strandat 810.242 kb on + strandat 810.248 kb on - strandat 810.329 kb on - strandat 810.466 kb on + strandat 810.504 kb on + strand, within CCNA_00752at 810.511 kb on + strand, within CCNA_00752at 810.511 kb on + strand, within CCNA_00752at 810.546 kb on + strand, within CCNA_00752at 810.546 kb on + strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.572 kb on - strand, within CCNA_00752at 810.577 kb on - strand, within CCNA_00752at 810.577 kb on - strand, within CCNA_00752at 810.590 kb on + strandat 810.631 kb on + strand, within CCNA_00752at 810.640 kb on + strand, within CCNA_00752at 810.648 kb on - strand, within CCNA_00752at 810.650 kb on + strand, within CCNA_00752at 810.652 kb on + strand, within CCNA_00752at 810.652 kb on + strand, within CCNA_00752at 810.660 kb on - strand, within CCNA_00752at 810.721 kb on - strand, within CCNA_00752at 810.771 kb on + strand, within CCNA_00752at 810.779 kb on - strand, within CCNA_00752at 810.802 kb on + strand, within CCNA_00752at 810.811 kb on + strand, within CCNA_00752at 810.819 kb on - strand, within CCNA_00752at 810.832 kb on - strand, within CCNA_00752at 810.887 kb on + strand, within CCNA_00752at 810.937 kb on + strand, within CCNA_00752at 810.939 kb on - strand, within CCNA_00752at 810.952 kb on - strand, within CCNA_00752at 810.952 kb on - strand, within CCNA_00752at 810.952 kb on - strand, within CCNA_00752at 811.025 kb on + strand, within CCNA_00752at 811.033 kb on - strand, within CCNA_00752at 811.033 kb on - strand, within CCNA_00752at 811.054 kb on - strand, within CCNA_00752at 811.061 kb on - strand, within CCNA_00752at 811.116 kb on - strand, within CCNA_00752at 811.138 kb on + strand, within CCNA_00752at 811.175 kb on + strandat 811.177 kb on - strandat 811.183 kb on - strandat 811.218 kb on + strandat 811.302 kb on + strandat 811.310 kb on - strandat 811.310 kb on - strandat 811.342 kb on + strandat 811.342 kb on + strandat 811.350 kb on - strandat 811.350 kb on - strandat 811.352 kb on + strandat 811.352 kb on + strandat 811.352 kb on + strandat 811.352 kb on + strandat 811.358 kb on + strandat 811.360 kb on - strandat 811.360 kb on - strandat 811.391 kb on - strandat 811.418 kb on + strandat 811.433 kb on + strandat 811.465 kb on + strandat 811.465 kb on + strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.476 kb on + strandat 811.483 kb on - strandat 811.483 kb on - strandat 811.483 kb on - strandat 811.528 kb on - strand, within CCNA_00753at 811.534 kb on - strand, within CCNA_00753at 811.540 kb on - strand, within CCNA_00753at 811.540 kb on - strand, within CCNA_00753at 811.542 kb on + strand, within CCNA_00753at 811.637 kb on - strand, within CCNA_00753at 811.638 kb on + strand, within CCNA_00753at 811.646 kb on - strand, within CCNA_00753at 811.646 kb on - strand, within CCNA_00753at 811.646 kb on - strand, within CCNA_00753at 811.646 kb on - strand, within CCNA_00753at 811.670 kb on - strand, within CCNA_00753at 811.694 kb on + strand, within CCNA_00753at 811.696 kb on + strand, within CCNA_00753at 811.702 kb on - strand, within CCNA_00753at 811.709 kb on + strand, within CCNA_00753at 811.725 kb on - strand, within CCNA_00753at 811.727 kb on - strand, within CCNA_00753at 811.746 kb on + strand, within CCNA_00753at 811.776 kb on + strand, within CCNA_00753at 811.818 kb on - strand, within CCNA_00753at 811.818 kb on - strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.919 kb on - strand, within CCNA_00753at 811.919 kb on - strand, within CCNA_00753at 811.919 kb on - strand, within CCNA_00753at 811.919 kb on - strand, within CCNA_00753at 812.002 kb on + strand, within CCNA_00753at 812.004 kb on + strand, within CCNA_00753at 812.010 kb on - strand, within CCNA_00753at 812.010 kb on - strand, within CCNA_00753at 812.010 kb on - strand, within CCNA_00753at 812.033 kb on + strand, within CCNA_00753at 812.033 kb on + strand, within CCNA_00753at 812.033 kb on + strand, within CCNA_00753at 812.036 kb on - strand, within CCNA_00753at 812.041 kb on - strand, within CCNA_00753at 812.051 kb on - strand, within CCNA_00753at 812.065 kb on + strand, within CCNA_00753at 812.082 kb on + strand, within CCNA_00753at 812.085 kb on - strand, within CCNA_00753at 812.114 kb on + strand, within CCNA_00753at 812.122 kb on - strand, within CCNA_00753at 812.129 kb on + strand, within CCNA_00753at 812.129 kb on + strand, within CCNA_00753at 812.129 kb on + strand, within CCNA_00753at 812.129 kb on + strand, within CCNA_00753at 812.132 kb on - strand, within CCNA_00753at 812.132 kb on - strand, within CCNA_00753at 812.137 kb on - strand, within CCNA_00753at 812.147 kb on - strand, within CCNA_00753at 812.160 kb on + strand, within CCNA_00753at 812.165 kb on + strand, within CCNA_00753at 812.168 kb on - strand, within CCNA_00753at 812.168 kb on - strand, within CCNA_00753at 812.168 kb on - strand, within CCNA_00753at 812.173 kb on - strand, within CCNA_00753at 812.182 kb on + strand, within CCNA_00753at 812.182 kb on + strand, within CCNA_00753at 812.190 kb on - strand, within CCNA_00753at 812.190 kb on - strand, within CCNA_00753at 812.192 kb on - strand, within CCNA_00753at 812.197 kb on - strand, within CCNA_00753at 812.234 kb on + strand, within CCNA_00753at 812.243 kb on - strand, within CCNA_00753

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM
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809,390 + CCNA_00751 0.32 -0.8
809,398 - CCNA_00751 0.33 +0.6
809,413 + CCNA_00751 0.34 +0.4
809,413 + CCNA_00751 0.34 +0.1
809,418 + CCNA_00751 0.34 +1.2
809,418 + CCNA_00751 0.34 -0.1
809,418 + CCNA_00751 0.34 +1.5
809,421 - CCNA_00751 0.35 -0.3
809,421 - CCNA_00751 0.35 +2.1
809,421 - CCNA_00751 0.35 +0.4
809,426 - CCNA_00751 0.35 +1.5
809,426 - CCNA_00751 0.35 -0.3
809,431 - CCNA_00751 0.35 +1.5
809,431 - CCNA_00751 0.35 +1.3
809,455 - CCNA_00751 0.37 -0.6
809,458 + CCNA_00751 0.38 +1.1
809,458 + CCNA_00751 0.38 -0.9
809,472 - CCNA_00751 0.39 +1.1
809,472 - CCNA_00751 0.39 +0.6
809,491 + CCNA_00751 0.40 +2.2
809,491 + CCNA_00751 0.40 +0.1
809,491 + CCNA_00751 0.40 +0.5
809,491 + CCNA_00751 0.40 +0.8
809,491 + CCNA_00751 0.40 -1.2
809,496 + CCNA_00751 0.41 -0.7
809,499 - CCNA_00751 0.41 +2.2
809,499 - CCNA_00751 0.41 -0.7
809,501 + CCNA_00751 0.41 +0.6
809,516 + CCNA_00751 0.42 +0.0
809,599 + CCNA_00751 0.49 +0.1
809,617 - CCNA_00751 0.50 +0.6
809,642 + CCNA_00751 0.52 -1.6
809,648 + CCNA_00751 0.53 +2.2
809,648 + CCNA_00751 0.53 +1.9
809,656 - CCNA_00751 0.53 +1.2
809,741 - CCNA_00751 0.60 +0.4
809,759 - CCNA_00751 0.62 -1.8
809,765 + CCNA_00751 0.62 -1.0
809,765 + CCNA_00751 0.62 -0.3
809,814 + CCNA_00751 0.66 -0.2
809,829 + CCNA_00751 0.67 -0.3
809,867 - CCNA_00751 0.70 +0.3
809,867 - CCNA_00751 0.70 +0.7
809,867 - CCNA_00751 0.70 +0.4
809,867 - CCNA_00751 0.70 +0.2
809,867 - CCNA_00751 0.70 -1.6
809,871 + CCNA_00751 0.71 -0.6
809,923 - CCNA_00751 0.75 +0.2
809,930 + CCNA_00751 0.76 -0.1
810,015 + CCNA_00751 0.82 +2.2
810,015 + CCNA_00751 0.82 -2.2
810,015 + CCNA_00751 0.82 +0.6
810,015 + CCNA_00751 0.82 -0.9
810,015 + CCNA_00751 0.82 -0.5
810,015 + CCNA_00751 0.82 -0.6
810,023 - CCNA_00751 0.83 +0.9
810,023 - CCNA_00751 0.83 +1.0
810,024 - CCNA_00751 0.83 +0.8
810,024 - CCNA_00751 0.83 +0.7
810,024 - CCNA_00751 0.83 +0.7
810,065 - CCNA_00751 0.86 +0.0
810,071 - CCNA_00751 0.87 +0.4
810,081 + CCNA_00751 0.88 -0.5
810,091 + CCNA_00751 0.88 -0.2
810,123 - +1.1
810,133 - +0.9
810,171 - +3.2
810,189 - +1.3
810,195 + +0.3
810,195 + -0.3
810,203 - +1.9
810,203 - +1.0
810,237 - +2.0
810,242 + -1.5
810,248 - +2.2
810,329 - +2.0
810,466 + +2.4
810,504 + CCNA_00752 0.14 +1.5
810,511 + CCNA_00752 0.14 +1.1
810,511 + CCNA_00752 0.14 +0.8
810,546 + CCNA_00752 0.18 +1.9
810,546 + CCNA_00752 0.18 -0.5
810,554 - CCNA_00752 0.19 +3.4
810,554 - CCNA_00752 0.19 +3.6
810,554 - CCNA_00752 0.19 +3.5
810,554 - CCNA_00752 0.19 +2.8
810,572 - CCNA_00752 0.21 +3.4
810,577 - CCNA_00752 0.22 +3.1
810,577 - CCNA_00752 0.22 +3.6
810,590 + +2.2
810,631 + CCNA_00752 0.28 +1.8
810,640 + CCNA_00752 0.29 +1.3
810,648 - CCNA_00752 0.30 +3.3
810,650 + CCNA_00752 0.30 +1.8
810,652 + CCNA_00752 0.30 +2.5
810,652 + CCNA_00752 0.30 +1.8
810,660 - CCNA_00752 0.31 +2.8
810,721 - CCNA_00752 0.38 +3.2
810,771 + CCNA_00752 0.44 +1.7
810,779 - CCNA_00752 0.45 +2.6
810,802 + CCNA_00752 0.48 +2.1
810,811 + CCNA_00752 0.49 +0.7
810,819 - CCNA_00752 0.49 +5.4
810,832 - CCNA_00752 0.51 +3.7
810,887 + CCNA_00752 0.57 +1.4
810,937 + CCNA_00752 0.63 +0.8
810,939 - CCNA_00752 0.63 +2.6
810,952 - CCNA_00752 0.65 +3.7
810,952 - CCNA_00752 0.65 +2.6
810,952 - CCNA_00752 0.65 +4.0
811,025 + CCNA_00752 0.73 -0.8
811,033 - CCNA_00752 0.74 +3.7
811,033 - CCNA_00752 0.74 +3.1
811,054 - CCNA_00752 0.76 +2.8
811,061 - CCNA_00752 0.77 +3.0
811,116 - CCNA_00752 0.83 +3.4
811,138 + CCNA_00752 0.86 -0.8
811,175 + +0.4
811,177 - +2.8
811,183 - +3.0
811,218 + +0.9
811,302 + +0.4
811,310 - +1.5
811,310 - +2.0
811,342 + -0.4
811,342 + -0.1
811,350 - +1.6
811,350 - +1.5
811,352 + +0.1
811,352 + -1.3
811,352 + -1.8
811,352 + +0.2
811,358 + -0.8
811,360 - -1.3
811,360 - -0.9
811,391 - +1.2
811,418 + +2.1
811,433 + -0.6
811,465 + -0.1
811,465 + -0.5
811,475 + +0.5
811,475 + -1.8
811,476 + -1.4
811,483 - +0.6
811,483 - +0.4
811,483 - +0.8
811,528 - CCNA_00753 0.12 -0.3
811,534 - CCNA_00753 0.13 +0.2
811,540 - CCNA_00753 0.13 +0.3
811,540 - CCNA_00753 0.13 +0.1
811,542 + CCNA_00753 0.14 +0.1
811,637 - CCNA_00753 0.23 -0.4
811,638 + CCNA_00753 0.23 -0.4
811,646 - CCNA_00753 0.24 +2.0
811,646 - CCNA_00753 0.24 +1.2
811,646 - CCNA_00753 0.24 -1.3
811,646 - CCNA_00753 0.24 -1.7
811,670 - CCNA_00753 0.26 +1.0
811,694 + CCNA_00753 0.28 -1.1
811,696 + CCNA_00753 0.29 +2.7
811,702 - CCNA_00753 0.29 +1.8
811,709 + CCNA_00753 0.30 +1.0
811,725 - CCNA_00753 0.31 -0.8
811,727 - CCNA_00753 0.32 +0.2
811,746 + CCNA_00753 0.33 +0.1
811,776 + CCNA_00753 0.36 -0.1
811,818 - CCNA_00753 0.40 -0.2
811,818 - CCNA_00753 0.40 +1.1
811,911 + CCNA_00753 0.49 -1.0
811,911 + CCNA_00753 0.49 -0.8
811,911 + CCNA_00753 0.49 -1.0
811,911 + CCNA_00753 0.49 +0.4
811,911 + CCNA_00753 0.49 -0.8
811,911 + CCNA_00753 0.49 -0.2
811,919 - CCNA_00753 0.50 -1.3
811,919 - CCNA_00753 0.50 +0.8
811,919 - CCNA_00753 0.50 -0.6
811,919 - CCNA_00753 0.50 +0.2
812,002 + CCNA_00753 0.58 +1.8
812,004 + CCNA_00753 0.58 -1.3
812,010 - CCNA_00753 0.59 +1.7
812,010 - CCNA_00753 0.59 -0.3
812,010 - CCNA_00753 0.59 +1.3
812,033 + CCNA_00753 0.61 -1.3
812,033 + CCNA_00753 0.61 -0.8
812,033 + CCNA_00753 0.61 +0.8
812,036 - CCNA_00753 0.61 -1.8
812,041 - CCNA_00753 0.62 -0.1
812,051 - CCNA_00753 0.63 +0.2
812,065 + CCNA_00753 0.64 -1.1
812,082 + CCNA_00753 0.66 -1.0
812,085 - CCNA_00753 0.66 -0.8
812,114 + CCNA_00753 0.69 +1.5
812,122 - CCNA_00753 0.70 +0.1
812,129 + CCNA_00753 0.70 +0.9
812,129 + CCNA_00753 0.70 -0.1
812,129 + CCNA_00753 0.70 +1.4
812,129 + CCNA_00753 0.70 -0.3
812,132 - CCNA_00753 0.71 +1.5
812,132 - CCNA_00753 0.71 -0.5
812,137 - CCNA_00753 0.71 -0.5
812,147 - CCNA_00753 0.72 +1.0
812,160 + CCNA_00753 0.73 -0.2
812,165 + CCNA_00753 0.74 -0.8
812,168 - CCNA_00753 0.74 -0.2
812,168 - CCNA_00753 0.74 -0.3
812,168 - CCNA_00753 0.74 +0.8
812,173 - CCNA_00753 0.74 +1.3
812,182 + CCNA_00753 0.75 -1.2
812,182 + CCNA_00753 0.75 -0.4
812,190 - CCNA_00753 0.76 -0.3
812,190 - CCNA_00753 0.76 +1.0
812,192 - CCNA_00753 0.76 -0.2
812,197 - CCNA_00753 0.77 -0.9
812,234 + CCNA_00753 0.80 -0.4
812,243 - CCNA_00753 0.81 -0.1

Or see this region's nucleotide sequence