Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00570

Experiment: PYE with nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00569 and CCNA_00570 are separated by 37 nucleotidesCCNA_00570 and CCNA_00571 are separated by 1 nucleotides CCNA_00569: CCNA_00569 - glucosamine-6-phosphate deaminase, at 587,111 to 588,187 _00569 CCNA_00570: CCNA_00570 - GntR-family transcriptional regulator, at 588,225 to 589,130 _00570 CCNA_00571: CCNA_00571 - phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system, glucose-specific IIA subunit, at 589,132 to 591,768 _00571 Position (kb) 588 589 590Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 587.244 kb on + strand, within CCNA_00569at 587.245 kb on - strand, within CCNA_00569at 587.252 kb on - strand, within CCNA_00569at 587.252 kb on - strand, within CCNA_00569at 587.252 kb on - strand, within CCNA_00569at 587.314 kb on + strand, within CCNA_00569at 587.322 kb on - strand, within CCNA_00569at 587.323 kb on - strand, within CCNA_00569at 587.361 kb on + strand, within CCNA_00569at 587.361 kb on + strand, within CCNA_00569at 587.393 kb on - strand, within CCNA_00569at 587.408 kb on + strand, within CCNA_00569at 587.408 kb on + strand, within CCNA_00569at 587.416 kb on - strand, within CCNA_00569at 587.416 kb on - strand, within CCNA_00569at 587.465 kb on + strand, within CCNA_00569at 587.465 kb on + strand, within CCNA_00569at 587.473 kb on - strand, within CCNA_00569at 587.515 kb on - strandat 587.529 kb on - strand, within CCNA_00569at 587.529 kb on - strand, within CCNA_00569at 587.548 kb on - strand, within CCNA_00569at 587.550 kb on + strand, within CCNA_00569at 587.550 kb on + strand, within CCNA_00569at 587.559 kb on - strand, within CCNA_00569at 587.561 kb on + strand, within CCNA_00569at 587.561 kb on + strand, within CCNA_00569at 587.591 kb on + strand, within CCNA_00569at 587.630 kb on + strand, within CCNA_00569at 587.658 kb on - strand, within CCNA_00569at 587.673 kb on + strand, within CCNA_00569at 587.702 kb on - strand, within CCNA_00569at 587.709 kb on - strand, within CCNA_00569at 587.744 kb on + strand, within CCNA_00569at 587.754 kb on - strand, within CCNA_00569at 587.756 kb on + strand, within CCNA_00569at 587.764 kb on - strand, within CCNA_00569at 587.771 kb on - strand, within CCNA_00569at 587.824 kb on + strandat 587.824 kb on + strand, within CCNA_00569at 587.832 kb on - strand, within CCNA_00569at 587.888 kb on + strandat 587.896 kb on - strand, within CCNA_00569at 587.924 kb on + strand, within CCNA_00569at 587.924 kb on + strand, within CCNA_00569at 587.924 kb on + strand, within CCNA_00569at 587.931 kb on + strand, within CCNA_00569at 587.932 kb on - strand, within CCNA_00569at 587.932 kb on - strand, within CCNA_00569at 587.940 kb on - strand, within CCNA_00569at 587.943 kb on + strand, within CCNA_00569at 587.990 kb on - strand, within CCNA_00569at 587.999 kb on + strand, within CCNA_00569at 588.007 kb on - strand, within CCNA_00569at 588.007 kb on - strand, within CCNA_00569at 588.017 kb on - strand, within CCNA_00569at 588.032 kb on - strand, within CCNA_00569at 588.038 kb on + strand, within CCNA_00569at 588.041 kb on - strand, within CCNA_00569at 588.068 kb on + strand, within CCNA_00569at 588.121 kb on - strandat 588.140 kb on - strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.189 kb on - strandat 588.210 kb on - strandat 588.237 kb on + strandat 588.317 kb on - strand, within CCNA_00570at 588.365 kb on + strand, within CCNA_00570at 588.366 kb on - strandat 588.382 kb on + strand, within CCNA_00570at 588.387 kb on + strand, within CCNA_00570at 588.390 kb on - strand, within CCNA_00570at 588.395 kb on - strand, within CCNA_00570at 588.450 kb on - strand, within CCNA_00570at 588.456 kb on - strand, within CCNA_00570at 588.462 kb on + strand, within CCNA_00570at 588.478 kb on + strand, within CCNA_00570at 588.483 kb on + strand, within CCNA_00570at 588.483 kb on + strand, within CCNA_00570at 588.486 kb on - strand, within CCNA_00570at 588.491 kb on - strand, within CCNA_00570at 588.496 kb on - strand, within CCNA_00570at 588.564 kb on - strand, within CCNA_00570at 588.591 kb on + strand, within CCNA_00570at 588.602 kb on + strand, within CCNA_00570at 588.602 kb on + strand, within CCNA_00570at 588.610 kb on - strand, within CCNA_00570at 588.650 kb on + strand, within CCNA_00570at 588.658 kb on - strand, within CCNA_00570at 588.658 kb on - strand, within CCNA_00570at 588.750 kb on + strand, within CCNA_00570at 588.750 kb on + strand, within CCNA_00570at 588.758 kb on + strand, within CCNA_00570at 588.758 kb on - strand, within CCNA_00570at 588.784 kb on + strand, within CCNA_00570at 588.787 kb on - strand, within CCNA_00570at 588.792 kb on - strand, within CCNA_00570at 588.792 kb on - strand, within CCNA_00570at 588.816 kb on + strand, within CCNA_00570at 588.816 kb on + strand, within CCNA_00570at 588.816 kb on + strand, within CCNA_00570at 588.816 kb on + strand, within CCNA_00570at 588.824 kb on - strand, within CCNA_00570at 588.890 kb on + strand, within CCNA_00570at 588.916 kb on + strand, within CCNA_00570at 588.944 kb on - strand, within CCNA_00570at 589.002 kb on - strand, within CCNA_00570at 589.061 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM
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587,244 + CCNA_00569 0.12 +0.4
587,245 - CCNA_00569 0.12 -0.8
587,252 - CCNA_00569 0.13 -0.0
587,252 - CCNA_00569 0.13 -0.4
587,252 - CCNA_00569 0.13 +0.9
587,314 + CCNA_00569 0.19 +0.4
587,322 - CCNA_00569 0.20 +0.4
587,323 - CCNA_00569 0.20 -1.6
587,361 + CCNA_00569 0.23 +0.4
587,361 + CCNA_00569 0.23 +0.1
587,393 - CCNA_00569 0.26 +0.2
587,408 + CCNA_00569 0.28 +1.3
587,408 + CCNA_00569 0.28 -1.5
587,416 - CCNA_00569 0.28 -0.4
587,416 - CCNA_00569 0.28 +0.3
587,465 + CCNA_00569 0.33 -1.1
587,465 + CCNA_00569 0.33 +1.4
587,473 - CCNA_00569 0.34 -0.6
587,515 - +0.7
587,529 - CCNA_00569 0.39 +0.1
587,529 - CCNA_00569 0.39 -0.2
587,548 - CCNA_00569 0.41 -0.7
587,550 + CCNA_00569 0.41 +1.8
587,550 + CCNA_00569 0.41 +2.2
587,559 - CCNA_00569 0.42 +1.8
587,561 + CCNA_00569 0.42 +0.1
587,561 + CCNA_00569 0.42 -1.2
587,591 + CCNA_00569 0.45 -0.9
587,630 + CCNA_00569 0.48 +3.9
587,658 - CCNA_00569 0.51 +1.1
587,673 + CCNA_00569 0.52 -1.4
587,702 - CCNA_00569 0.55 +0.6
587,709 - CCNA_00569 0.56 -2.0
587,744 + CCNA_00569 0.59 +1.3
587,754 - CCNA_00569 0.60 -0.6
587,756 + CCNA_00569 0.60 +0.4
587,764 - CCNA_00569 0.61 -0.9
587,771 - CCNA_00569 0.61 -1.7
587,824 + +1.6
587,824 + CCNA_00569 0.66 -2.1
587,832 - CCNA_00569 0.67 +0.3
587,888 + +1.6
587,896 - CCNA_00569 0.73 -1.3
587,924 + CCNA_00569 0.75 -0.3
587,924 + CCNA_00569 0.75 -1.7
587,924 + CCNA_00569 0.75 +2.0
587,931 + CCNA_00569 0.76 -1.8
587,932 - CCNA_00569 0.76 +1.3
587,932 - CCNA_00569 0.76 -0.3
587,940 - CCNA_00569 0.77 -1.0
587,943 + CCNA_00569 0.77 +0.2
587,990 - CCNA_00569 0.82 -1.4
587,999 + CCNA_00569 0.82 -1.6
588,007 - CCNA_00569 0.83 -0.5
588,007 - CCNA_00569 0.83 -0.9
588,017 - CCNA_00569 0.84 -0.6
588,032 - CCNA_00569 0.86 -1.0
588,038 + CCNA_00569 0.86 -0.7
588,041 - CCNA_00569 0.86 -1.3
588,068 + CCNA_00569 0.89 -1.8
588,121 - -0.8
588,140 - +2.5
588,167 + +0.4
588,167 + -1.5
588,167 + -0.8
588,167 + -0.6
588,167 + +1.6
588,167 + +3.0
588,167 + -0.9
588,167 + +0.9
588,167 + +1.9
588,167 + +0.7
588,167 + -0.6
588,167 + -0.4
588,167 + -1.3
588,175 - -0.3
588,175 - +0.7
588,175 - -0.2
588,175 - +1.0
588,175 - -1.6
588,175 - -1.0
588,175 - +1.0
588,175 - +0.0
588,175 - -0.2
588,175 - -1.8
588,175 - -1.6
588,175 - +0.2
588,189 - +0.7
588,210 - -1.6
588,237 + +0.9
588,317 - CCNA_00570 0.10 +0.0
588,365 + CCNA_00570 0.15 -1.6
588,366 - +1.3
588,382 + CCNA_00570 0.17 +1.3
588,387 + CCNA_00570 0.18 -0.6
588,390 - CCNA_00570 0.18 -0.1
588,395 - CCNA_00570 0.19 +0.7
588,450 - CCNA_00570 0.25 +0.3
588,456 - CCNA_00570 0.25 +1.6
588,462 + CCNA_00570 0.26 -1.9
588,478 + CCNA_00570 0.28 +0.1
588,483 + CCNA_00570 0.28 -0.2
588,483 + CCNA_00570 0.28 -1.6
588,486 - CCNA_00570 0.29 +1.1
588,491 - CCNA_00570 0.29 +0.4
588,496 - CCNA_00570 0.30 -0.0
588,564 - CCNA_00570 0.37 -0.3
588,591 + CCNA_00570 0.40 -2.0
588,602 + CCNA_00570 0.42 +0.6
588,602 + CCNA_00570 0.42 +1.1
588,610 - CCNA_00570 0.42 +0.7
588,650 + CCNA_00570 0.47 +0.1
588,658 - CCNA_00570 0.48 -0.3
588,658 - CCNA_00570 0.48 +0.7
588,750 + CCNA_00570 0.58 -1.3
588,750 + CCNA_00570 0.58 +0.4
588,758 + CCNA_00570 0.59 -0.2
588,758 - CCNA_00570 0.59 +0.6
588,784 + CCNA_00570 0.62 -2.2
588,787 - CCNA_00570 0.62 -1.5
588,792 - CCNA_00570 0.63 +0.6
588,792 - CCNA_00570 0.63 -1.1
588,816 + CCNA_00570 0.65 -0.8
588,816 + CCNA_00570 0.65 -0.7
588,816 + CCNA_00570 0.65 -0.0
588,816 + CCNA_00570 0.65 -2.1
588,824 - CCNA_00570 0.66 -0.4
588,890 + CCNA_00570 0.73 +0.2
588,916 + CCNA_00570 0.76 -0.9
588,944 - CCNA_00570 0.79 +0.0
589,002 - CCNA_00570 0.86 +0.4
589,061 + +0.1

Or see this region's nucleotide sequence