Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00566

Experiment: PYE with nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00565 and CCNA_R0008 are separated by 253 nucleotidesCCNA_R0008 and CCNA_00566 are separated by 221 nucleotidesCCNA_00566 and CCNA_00567 are separated by 122 nucleotides CCNA_00565: CCNA_00565 - gamma-glutamyltranspeptidase, at 580,036 to 581,778 _00565 CCNA_R0008: CCNA_R0008 - tRNA-Arg, at 582,032 to 582,108 _R0008 CCNA_00566: CCNA_00566 - mannonate dehydratase, at 582,330 to 583,541 _00566 CCNA_00567: CCNA_00567 - alpha-1,2-mannosidase, at 583,664 to 585,976 _00567 Position (kb) 582 583 584Strain fitness (log2 ratio) -2 -1 0 1 2 3at 581.378 kb on - strand, within CCNA_00565at 581.378 kb on - strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.380 kb on + strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.388 kb on - strand, within CCNA_00565at 581.389 kb on - strand, within CCNA_00565at 581.395 kb on - strand, within CCNA_00565at 581.395 kb on - strand, within CCNA_00565at 581.401 kb on - strand, within CCNA_00565at 581.446 kb on - strand, within CCNA_00565at 581.449 kb on + strand, within CCNA_00565at 581.461 kb on + strand, within CCNA_00565at 581.471 kb on + strand, within CCNA_00565at 581.506 kb on + strand, within CCNA_00565at 581.511 kb on + strand, within CCNA_00565at 581.511 kb on + strand, within CCNA_00565at 581.514 kb on - strand, within CCNA_00565at 581.514 kb on - strand, within CCNA_00565at 581.514 kb on - strand, within CCNA_00565at 581.514 kb on - strand, within CCNA_00565at 581.519 kb on - strand, within CCNA_00565at 581.544 kb on - strand, within CCNA_00565at 581.601 kb on + strand, within CCNA_00565at 581.604 kb on - strandat 581.641 kb on + strandat 581.652 kb on + strandat 581.652 kb on + strandat 581.653 kb on + strandat 581.660 kb on - strandat 581.699 kb on + strandat 581.721 kb on + strandat 581.731 kb on + strandat 581.739 kb on + strandat 581.773 kb on - strandat 581.854 kb on - strandat 581.865 kb on - strandat 581.884 kb on + strandat 581.884 kb on + strandat 581.911 kb on + strandat 581.911 kb on + strandat 582.222 kb on - strandat 582.224 kb on + strandat 582.224 kb on + strandat 582.236 kb on - strandat 582.257 kb on - strandat 582.295 kb on + strandat 582.297 kb on + strandat 582.300 kb on + strandat 582.308 kb on - strandat 582.336 kb on + strandat 582.336 kb on + strandat 582.359 kb on - strandat 582.382 kb on - strandat 582.385 kb on + strandat 582.400 kb on + strandat 582.402 kb on + strandat 582.407 kb on + strandat 582.431 kb on + strandat 582.439 kb on - strandat 582.453 kb on + strand, within CCNA_00566at 582.461 kb on - strand, within CCNA_00566at 582.472 kb on + strand, within CCNA_00566at 582.478 kb on - strand, within CCNA_00566at 582.479 kb on - strand, within CCNA_00566at 582.480 kb on - strand, within CCNA_00566at 582.480 kb on - strand, within CCNA_00566at 582.516 kb on + strand, within CCNA_00566at 582.558 kb on + strand, within CCNA_00566at 582.566 kb on - strand, within CCNA_00566at 582.566 kb on - strand, within CCNA_00566at 582.566 kb on - strand, within CCNA_00566at 582.566 kb on - strand, within CCNA_00566at 582.579 kb on - strand, within CCNA_00566at 582.598 kb on - strand, within CCNA_00566at 582.598 kb on - strand, within CCNA_00566at 582.612 kb on + strand, within CCNA_00566at 582.613 kb on + strand, within CCNA_00566at 582.621 kb on - strand, within CCNA_00566at 582.623 kb on + strand, within CCNA_00566at 582.624 kb on + strand, within CCNA_00566at 582.632 kb on - strand, within CCNA_00566at 582.664 kb on - strand, within CCNA_00566at 582.667 kb on + strand, within CCNA_00566at 582.675 kb on + strand, within CCNA_00566at 582.680 kb on + strand, within CCNA_00566at 582.680 kb on + strand, within CCNA_00566at 582.683 kb on - strand, within CCNA_00566at 582.688 kb on - strand, within CCNA_00566at 582.733 kb on + strand, within CCNA_00566at 582.733 kb on + strand, within CCNA_00566at 582.733 kb on + strand, within CCNA_00566at 582.741 kb on - strand, within CCNA_00566at 582.741 kb on - strand, within CCNA_00566at 582.768 kb on + strand, within CCNA_00566at 582.778 kb on - strand, within CCNA_00566at 582.778 kb on - strand, within CCNA_00566at 582.861 kb on - strand, within CCNA_00566at 582.888 kb on - strand, within CCNA_00566at 582.890 kb on + strand, within CCNA_00566at 582.900 kb on + strand, within CCNA_00566at 582.900 kb on + strand, within CCNA_00566at 582.900 kb on - strand, within CCNA_00566at 582.926 kb on + strand, within CCNA_00566at 582.928 kb on + strand, within CCNA_00566at 582.928 kb on + strand, within CCNA_00566at 582.933 kb on + strand, within CCNA_00566at 582.933 kb on + strand, within CCNA_00566at 582.936 kb on - strand, within CCNA_00566at 582.936 kb on - strand, within CCNA_00566at 582.936 kb on - strand, within CCNA_00566at 582.941 kb on - strand, within CCNA_00566at 582.941 kb on - strand, within CCNA_00566at 582.952 kb on + strand, within CCNA_00566at 582.952 kb on + strand, within CCNA_00566at 582.952 kb on + strand, within CCNA_00566at 582.952 kb on + strand, within CCNA_00566at 582.960 kb on - strand, within CCNA_00566at 582.962 kb on + strand, within CCNA_00566at 582.962 kb on + strand, within CCNA_00566at 582.962 kb on + strand, within CCNA_00566at 582.962 kb on + strand, within CCNA_00566at 582.962 kb on + strand, within CCNA_00566at 582.962 kb on + strand, within CCNA_00566at 582.962 kb on + strand, within CCNA_00566at 583.002 kb on - strand, within CCNA_00566at 583.060 kb on + strand, within CCNA_00566at 583.066 kb on - strand, within CCNA_00566at 583.066 kb on - strand, within CCNA_00566at 583.071 kb on + strand, within CCNA_00566at 583.074 kb on - strand, within CCNA_00566at 583.120 kb on + strand, within CCNA_00566at 583.120 kb on + strand, within CCNA_00566at 583.120 kb on + strand, within CCNA_00566at 583.120 kb on + strand, within CCNA_00566at 583.120 kb on + strand, within CCNA_00566at 583.120 kb on + strand, within CCNA_00566at 583.128 kb on - strand, within CCNA_00566at 583.128 kb on - strand, within CCNA_00566at 583.128 kb on - strand, within CCNA_00566at 583.128 kb on - strand, within CCNA_00566at 583.128 kb on - strand, within CCNA_00566at 583.128 kb on - strand, within CCNA_00566at 583.128 kb on - strand, within CCNA_00566at 583.128 kb on - strand, within CCNA_00566at 583.141 kb on + strand, within CCNA_00566at 583.149 kb on - strand, within CCNA_00566at 583.157 kb on - strand, within CCNA_00566at 583.184 kb on - strand, within CCNA_00566at 583.232 kb on + strand, within CCNA_00566at 583.239 kb on + strand, within CCNA_00566at 583.248 kb on - strand, within CCNA_00566at 583.260 kb on - strand, within CCNA_00566at 583.270 kb on - strand, within CCNA_00566at 583.288 kb on + strand, within CCNA_00566at 583.313 kb on + strand, within CCNA_00566at 583.345 kb on + strand, within CCNA_00566at 583.353 kb on - strand, within CCNA_00566at 583.428 kb on + strandat 583.433 kb on + strandat 583.436 kb on - strandat 583.483 kb on - strandat 583.483 kb on - strandat 583.509 kb on - strandat 583.510 kb on + strandat 583.510 kb on + strandat 583.543 kb on + strandat 583.543 kb on + strandat 583.543 kb on + strandat 583.680 kb on + strandat 583.712 kb on - strandat 583.725 kb on - strandat 583.732 kb on - strandat 583.773 kb on - strandat 583.775 kb on - strandat 583.796 kb on + strandat 583.806 kb on - strandat 583.820 kb on - strandat 583.828 kb on - strandat 583.828 kb on - strandat 583.876 kb on - strandat 583.895 kb on + strandat 583.936 kb on + strand, within CCNA_00567at 583.937 kb on - strand, within CCNA_00567at 583.942 kb on + strand, within CCNA_00567at 583.943 kb on - strand, within CCNA_00567at 583.975 kb on - strand, within CCNA_00567at 583.977 kb on + strand, within CCNA_00567at 583.985 kb on - strand, within CCNA_00567at 584.012 kb on + strand, within CCNA_00567at 584.058 kb on - strand, within CCNA_00567at 584.094 kb on + strand, within CCNA_00567at 584.133 kb on + strand, within CCNA_00567at 584.136 kb on + strand, within CCNA_00567at 584.167 kb on + strand, within CCNA_00567at 584.167 kb on + strand, within CCNA_00567at 584.225 kb on + strand, within CCNA_00567at 584.225 kb on - strand, within CCNA_00567at 584.244 kb on + strand, within CCNA_00567at 584.249 kb on + strand, within CCNA_00567at 584.269 kb on + strand, within CCNA_00567at 584.283 kb on + strand, within CCNA_00567at 584.288 kb on + strand, within CCNA_00567at 584.298 kb on + strand, within CCNA_00567at 584.338 kb on + strand, within CCNA_00567at 584.369 kb on - strand, within CCNA_00567at 584.397 kb on - strand, within CCNA_00567at 584.423 kb on - strand, within CCNA_00567at 584.448 kb on - strand, within CCNA_00567at 584.453 kb on + strand, within CCNA_00567at 584.463 kb on - strand, within CCNA_00567at 584.467 kb on + strand, within CCNA_00567at 584.467 kb on + strand, within CCNA_00567at 584.471 kb on - strand, within CCNA_00567at 584.475 kb on - strand, within CCNA_00567at 584.475 kb on - strand, within CCNA_00567at 584.485 kb on - strand, within CCNA_00567at 584.506 kb on + strand, within CCNA_00567at 584.518 kb on + strand, within CCNA_00567at 584.518 kb on + strand, within CCNA_00567at 584.523 kb on + strand, within CCNA_00567at 584.526 kb on - strand, within CCNA_00567at 584.526 kb on - strand, within CCNA_00567

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM
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581,378 - CCNA_00565 0.77 +1.5
581,378 - CCNA_00565 0.77 +0.6
581,380 + CCNA_00565 0.77 -0.7
581,380 + CCNA_00565 0.77 -1.6
581,380 + CCNA_00565 0.77 -1.0
581,380 + CCNA_00565 0.77 +2.8
581,380 + CCNA_00565 0.77 -0.9
581,380 + CCNA_00565 0.77 -1.2
581,380 + CCNA_00565 0.77 -1.8
581,380 + CCNA_00565 0.77 -0.3
581,380 + CCNA_00565 0.77 -1.8
581,380 + CCNA_00565 0.77 -0.9
581,380 + CCNA_00565 0.77 -0.2
581,380 + CCNA_00565 0.77 +0.4
581,388 - CCNA_00565 0.78 -0.7
581,388 - CCNA_00565 0.78 -0.4
581,388 - CCNA_00565 0.78 +0.5
581,388 - CCNA_00565 0.78 -0.2
581,388 - CCNA_00565 0.78 +0.9
581,388 - CCNA_00565 0.78 +0.6
581,388 - CCNA_00565 0.78 +0.4
581,388 - CCNA_00565 0.78 +1.1
581,388 - CCNA_00565 0.78 -1.4
581,388 - CCNA_00565 0.78 -0.3
581,388 - CCNA_00565 0.78 -1.0
581,388 - CCNA_00565 0.78 +1.1
581,388 - CCNA_00565 0.78 -0.3
581,389 - CCNA_00565 0.78 +0.6
581,395 - CCNA_00565 0.78 -1.1
581,395 - CCNA_00565 0.78 -0.1
581,401 - CCNA_00565 0.78 -0.6
581,446 - CCNA_00565 0.81 +0.9
581,449 + CCNA_00565 0.81 -0.2
581,461 + CCNA_00565 0.82 -0.5
581,471 + CCNA_00565 0.82 +1.6
581,506 + CCNA_00565 0.84 +0.2
581,511 + CCNA_00565 0.85 -1.0
581,511 + CCNA_00565 0.85 +1.1
581,514 - CCNA_00565 0.85 -0.3
581,514 - CCNA_00565 0.85 +0.8
581,514 - CCNA_00565 0.85 -0.5
581,514 - CCNA_00565 0.85 -0.5
581,519 - CCNA_00565 0.85 -1.9
581,544 - CCNA_00565 0.87 -1.0
581,601 + CCNA_00565 0.90 -1.1
581,604 - -0.5
581,641 + -0.0
581,652 + -1.6
581,652 + -0.3
581,653 + +1.0
581,660 - -2.0
581,699 + -1.2
581,721 + +0.4
581,731 + -0.5
581,739 + +1.2
581,773 - -0.4
581,854 - +1.4
581,865 - +0.9
581,884 + +0.4
581,884 + +0.2
581,911 + -0.7
581,911 + -1.3
582,222 - -2.0
582,224 + -0.5
582,224 + -1.6
582,236 - -0.4
582,257 - +0.5
582,295 + +0.7
582,297 + +1.0
582,300 + +0.3
582,308 - -0.5
582,336 + +1.0
582,336 + -0.3
582,359 - +1.4
582,382 - +0.2
582,385 + -1.7
582,400 + +1.7
582,402 + -1.1
582,407 + +0.8
582,431 + -0.8
582,439 - -0.5
582,453 + CCNA_00566 0.10 +1.8
582,461 - CCNA_00566 0.11 +1.8
582,472 + CCNA_00566 0.12 -1.0
582,478 - CCNA_00566 0.12 -0.1
582,479 - CCNA_00566 0.12 -0.1
582,480 - CCNA_00566 0.12 -1.3
582,480 - CCNA_00566 0.12 +0.6
582,516 + CCNA_00566 0.15 -1.6
582,558 + CCNA_00566 0.19 -1.6
582,566 - CCNA_00566 0.19 +0.8
582,566 - CCNA_00566 0.19 -1.0
582,566 - CCNA_00566 0.19 +1.7
582,566 - CCNA_00566 0.19 +0.6
582,579 - CCNA_00566 0.21 -1.1
582,598 - CCNA_00566 0.22 -2.3
582,598 - CCNA_00566 0.22 +0.4
582,612 + CCNA_00566 0.23 -0.3
582,613 + CCNA_00566 0.23 -1.3
582,621 - CCNA_00566 0.24 -2.0
582,623 + CCNA_00566 0.24 +2.6
582,624 + CCNA_00566 0.24 +0.4
582,632 - CCNA_00566 0.25 -0.3
582,664 - CCNA_00566 0.28 +0.7
582,667 + CCNA_00566 0.28 -2.0
582,675 + CCNA_00566 0.28 -2.0
582,680 + CCNA_00566 0.29 -1.2
582,680 + CCNA_00566 0.29 -1.8
582,683 - CCNA_00566 0.29 +0.8
582,688 - CCNA_00566 0.30 -0.3
582,733 + CCNA_00566 0.33 -0.1
582,733 + CCNA_00566 0.33 +0.6
582,733 + CCNA_00566 0.33 +0.9
582,741 - CCNA_00566 0.34 -1.5
582,741 - CCNA_00566 0.34 -1.3
582,768 + CCNA_00566 0.36 -0.8
582,778 - CCNA_00566 0.37 +0.4
582,778 - CCNA_00566 0.37 -0.1
582,861 - CCNA_00566 0.44 -2.4
582,888 - CCNA_00566 0.46 -0.2
582,890 + CCNA_00566 0.46 +0.4
582,900 + CCNA_00566 0.47 -0.7
582,900 + CCNA_00566 0.47 +0.1
582,900 - CCNA_00566 0.47 -0.4
582,926 + CCNA_00566 0.49 +0.2
582,928 + CCNA_00566 0.49 +0.4
582,928 + CCNA_00566 0.49 +0.9
582,933 + CCNA_00566 0.50 -0.4
582,933 + CCNA_00566 0.50 -0.9
582,936 - CCNA_00566 0.50 +0.2
582,936 - CCNA_00566 0.50 +1.0
582,936 - CCNA_00566 0.50 -0.7
582,941 - CCNA_00566 0.50 +2.0
582,941 - CCNA_00566 0.50 -0.4
582,952 + CCNA_00566 0.51 +0.0
582,952 + CCNA_00566 0.51 -0.6
582,952 + CCNA_00566 0.51 -1.7
582,952 + CCNA_00566 0.51 +0.8
582,960 - CCNA_00566 0.52 +0.4
582,962 + CCNA_00566 0.52 -2.5
582,962 + CCNA_00566 0.52 -1.1
582,962 + CCNA_00566 0.52 -1.0
582,962 + CCNA_00566 0.52 +0.2
582,962 + CCNA_00566 0.52 -1.2
582,962 + CCNA_00566 0.52 +0.2
582,962 + CCNA_00566 0.52 +0.8
583,002 - CCNA_00566 0.55 -1.3
583,060 + CCNA_00566 0.60 -1.4
583,066 - CCNA_00566 0.61 +0.0
583,066 - CCNA_00566 0.61 -1.0
583,071 + CCNA_00566 0.61 +1.0
583,074 - CCNA_00566 0.61 -1.6
583,120 + CCNA_00566 0.65 -0.6
583,120 + CCNA_00566 0.65 +0.5
583,120 + CCNA_00566 0.65 +0.9
583,120 + CCNA_00566 0.65 -0.8
583,120 + CCNA_00566 0.65 -1.2
583,120 + CCNA_00566 0.65 +0.2
583,128 - CCNA_00566 0.66 -0.9
583,128 - CCNA_00566 0.66 -1.1
583,128 - CCNA_00566 0.66 -1.0
583,128 - CCNA_00566 0.66 -0.2
583,128 - CCNA_00566 0.66 +0.1
583,128 - CCNA_00566 0.66 -1.2
583,128 - CCNA_00566 0.66 +0.4
583,128 - CCNA_00566 0.66 +0.1
583,141 + CCNA_00566 0.67 +1.5
583,149 - CCNA_00566 0.68 +1.2
583,157 - CCNA_00566 0.68 +0.5
583,184 - CCNA_00566 0.70 -1.0
583,232 + CCNA_00566 0.74 +1.1
583,239 + CCNA_00566 0.75 -0.5
583,248 - CCNA_00566 0.76 -1.7
583,260 - CCNA_00566 0.77 -1.0
583,270 - CCNA_00566 0.78 -0.5
583,288 + CCNA_00566 0.79 -1.8
583,313 + CCNA_00566 0.81 -0.9
583,345 + CCNA_00566 0.84 +0.6
583,353 - CCNA_00566 0.84 -2.3
583,428 + -1.4
583,433 + -1.0
583,436 - -1.3
583,483 - -0.6
583,483 - -0.6
583,509 - -0.5
583,510 + -0.7
583,510 + +0.4
583,543 + -0.7
583,543 + -0.9
583,543 + +2.3
583,680 + +0.1
583,712 - -2.7
583,725 - +0.4
583,732 - +0.3
583,773 - +0.0
583,775 - +1.2
583,796 + +0.1
583,806 - +0.2
583,820 - -0.6
583,828 - -0.2
583,828 - -0.4
583,876 - -0.7
583,895 + -0.3
583,936 + CCNA_00567 0.12 +0.6
583,937 - CCNA_00567 0.12 +0.1
583,942 + CCNA_00567 0.12 -0.3
583,943 - CCNA_00567 0.12 +1.1
583,975 - CCNA_00567 0.13 +0.4
583,977 + CCNA_00567 0.14 +1.3
583,985 - CCNA_00567 0.14 -1.2
584,012 + CCNA_00567 0.15 -1.0
584,058 - CCNA_00567 0.17 -0.7
584,094 + CCNA_00567 0.19 -2.7
584,133 + CCNA_00567 0.20 +0.1
584,136 + CCNA_00567 0.20 -1.0
584,167 + CCNA_00567 0.22 -1.6
584,167 + CCNA_00567 0.22 -1.4
584,225 + CCNA_00567 0.24 +0.2
584,225 - CCNA_00567 0.24 -0.0
584,244 + CCNA_00567 0.25 +0.5
584,249 + CCNA_00567 0.25 +0.6
584,269 + CCNA_00567 0.26 +0.2
584,283 + CCNA_00567 0.27 -0.1
584,288 + CCNA_00567 0.27 +1.0
584,298 + CCNA_00567 0.27 -1.1
584,338 + CCNA_00567 0.29 -0.3
584,369 - CCNA_00567 0.30 +1.1
584,397 - CCNA_00567 0.32 +2.2
584,423 - CCNA_00567 0.33 -0.0
584,448 - CCNA_00567 0.34 -1.5
584,453 + CCNA_00567 0.34 -0.4
584,463 - CCNA_00567 0.35 -0.8
584,467 + CCNA_00567 0.35 +0.1
584,467 + CCNA_00567 0.35 -0.3
584,471 - CCNA_00567 0.35 -1.1
584,475 - CCNA_00567 0.35 -0.5
584,475 - CCNA_00567 0.35 +0.7
584,485 - CCNA_00567 0.35 -1.1
584,506 + CCNA_00567 0.36 +0.9
584,518 + CCNA_00567 0.37 +1.2
584,518 + CCNA_00567 0.37 -1.4
584,523 + CCNA_00567 0.37 -1.6
584,526 - CCNA_00567 0.37 -0.1
584,526 - CCNA_00567 0.37 -1.6

Or see this region's nucleotide sequence