Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00500

Experiment: PYE with nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00497 and CCNA_00498 are separated by 60 nucleotidesCCNA_00498 and CCNA_00499 are separated by 75 nucleotidesCCNA_00499 and CCNA_00500 overlap by 4 nucleotidesCCNA_00500 and CCNA_00501 overlap by 4 nucleotides CCNA_00497: CCNA_00497 - putative rhamnosyl transferase, at 514,298 to 515,224 _00497 CCNA_00498: CCNA_00498 - hypothetical protein, at 515,285 to 515,404 _00498 CCNA_00499: CCNA_00499 - hypothetical protein, at 515,480 to 515,845 _00499 CCNA_00500: CCNA_00500 - hydroxymethylglutaryl-CoA lyase, at 515,842 to 516,741 _00500 CCNA_00501: CCNA_00501 - glucosyltransferase, at 516,738 to 518,417 _00501 Position (kb) 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 514.852 kb on - strand, within CCNA_00497at 514.937 kb on - strand, within CCNA_00497at 514.980 kb on - strand, within CCNA_00497at 514.998 kb on + strand, within CCNA_00497at 515.003 kb on + strand, within CCNA_00497at 515.003 kb on + strand, within CCNA_00497at 515.008 kb on + strand, within CCNA_00497at 515.011 kb on - strand, within CCNA_00497at 515.014 kb on + strand, within CCNA_00497at 515.028 kb on - strand, within CCNA_00497at 515.039 kb on + strand, within CCNA_00497at 515.047 kb on - strand, within CCNA_00497at 515.049 kb on + strand, within CCNA_00497at 515.049 kb on + strand, within CCNA_00497at 515.057 kb on - strand, within CCNA_00497at 515.077 kb on + strand, within CCNA_00497at 515.077 kb on - strand, within CCNA_00497at 515.084 kb on + strand, within CCNA_00497at 515.085 kb on - strand, within CCNA_00497at 515.090 kb on + strand, within CCNA_00497at 515.090 kb on + strand, within CCNA_00497at 515.090 kb on + strand, within CCNA_00497at 515.155 kb on - strandat 515.220 kb on + strandat 515.230 kb on + strandat 515.231 kb on + strandat 515.238 kb on - strandat 515.257 kb on - strandat 515.277 kb on + strandat 515.290 kb on - strandat 515.297 kb on + strand, within CCNA_00498at 515.300 kb on - strand, within CCNA_00498at 515.349 kb on + strand, within CCNA_00498at 515.349 kb on + strand, within CCNA_00498at 515.357 kb on - strand, within CCNA_00498at 515.368 kb on + strand, within CCNA_00498at 515.374 kb on + strand, within CCNA_00498at 515.382 kb on - strand, within CCNA_00498at 515.443 kb on - strandat 515.465 kb on + strandat 515.538 kb on + strand, within CCNA_00499at 515.546 kb on - strand, within CCNA_00499at 515.565 kb on + strand, within CCNA_00499at 515.565 kb on + strand, within CCNA_00499at 515.582 kb on - strand, within CCNA_00499at 515.586 kb on + strand, within CCNA_00499at 515.604 kb on + strand, within CCNA_00499at 515.640 kb on - strand, within CCNA_00499at 515.642 kb on + strand, within CCNA_00499at 515.642 kb on + strand, within CCNA_00499at 515.642 kb on + strand, within CCNA_00499at 515.689 kb on - strand, within CCNA_00499at 515.713 kb on + strand, within CCNA_00499at 515.713 kb on + strand, within CCNA_00499at 515.721 kb on - strand, within CCNA_00499at 515.767 kb on + strand, within CCNA_00499at 515.820 kb on - strandat 515.846 kb on - strandat 516.744 kb on - strandat 516.744 kb on - strandat 516.744 kb on - strandat 516.748 kb on + strandat 516.768 kb on - strandat 516.820 kb on - strandat 516.821 kb on - strandat 516.821 kb on - strandat 516.856 kb on + strandat 516.861 kb on + strandat 516.934 kb on - strand, within CCNA_00501at 517.036 kb on - strand, within CCNA_00501at 517.068 kb on + strand, within CCNA_00501at 517.164 kb on - strand, within CCNA_00501at 517.224 kb on - strand, within CCNA_00501at 517.229 kb on + strand, within CCNA_00501at 517.254 kb on - strand, within CCNA_00501at 517.317 kb on + strand, within CCNA_00501at 517.317 kb on + strand, within CCNA_00501at 517.392 kb on - strand, within CCNA_00501at 517.403 kb on - strand, within CCNA_00501at 517.473 kb on - strand, within CCNA_00501at 517.521 kb on + strand, within CCNA_00501at 517.586 kb on - strand, within CCNA_00501at 517.586 kb on - strand, within CCNA_00501at 517.671 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.716 kb on - strand, within CCNA_00501

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM
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514,852 - CCNA_00497 0.60 -2.6
514,937 - CCNA_00497 0.69 +0.6
514,980 - CCNA_00497 0.74 -1.7
514,998 + CCNA_00497 0.76 +1.8
515,003 + CCNA_00497 0.76 +1.8
515,003 + CCNA_00497 0.76 +1.5
515,008 + CCNA_00497 0.77 +0.8
515,011 - CCNA_00497 0.77 +1.5
515,014 + CCNA_00497 0.77 +1.5
515,028 - CCNA_00497 0.79 +0.1
515,039 + CCNA_00497 0.80 +1.8
515,047 - CCNA_00497 0.81 -0.6
515,049 + CCNA_00497 0.81 +1.1
515,049 + CCNA_00497 0.81 +1.3
515,057 - CCNA_00497 0.82 -0.9
515,077 + CCNA_00497 0.84 +1.4
515,077 - CCNA_00497 0.84 +0.6
515,084 + CCNA_00497 0.85 +1.8
515,085 - CCNA_00497 0.85 -0.8
515,090 + CCNA_00497 0.85 +1.7
515,090 + CCNA_00497 0.85 +1.5
515,090 + CCNA_00497 0.85 +1.4
515,155 - -1.6
515,220 + +2.2
515,230 + +0.9
515,231 + +1.6
515,238 - +2.1
515,257 - +0.6
515,277 + +1.7
515,290 - -1.0
515,297 + CCNA_00498 0.10 +2.1
515,300 - CCNA_00498 0.12 -0.2
515,349 + CCNA_00498 0.53 +0.7
515,349 + CCNA_00498 0.53 +0.4
515,357 - CCNA_00498 0.60 -0.0
515,368 + CCNA_00498 0.69 -1.6
515,374 + CCNA_00498 0.74 -0.4
515,382 - CCNA_00498 0.81 +0.4
515,443 - -0.1
515,465 + -0.2
515,538 + CCNA_00499 0.16 +1.8
515,546 - CCNA_00499 0.18 -0.4
515,565 + CCNA_00499 0.23 +1.7
515,565 + CCNA_00499 0.23 +0.6
515,582 - CCNA_00499 0.28 -0.4
515,586 + CCNA_00499 0.29 -0.3
515,604 + CCNA_00499 0.34 +0.8
515,640 - CCNA_00499 0.44 +0.2
515,642 + CCNA_00499 0.44 +0.2
515,642 + CCNA_00499 0.44 +0.4
515,642 + CCNA_00499 0.44 -0.8
515,689 - CCNA_00499 0.57 +1.8
515,713 + CCNA_00499 0.64 +0.6
515,713 + CCNA_00499 0.64 -0.8
515,721 - CCNA_00499 0.66 +0.9
515,767 + CCNA_00499 0.78 -0.3
515,820 - +0.8
515,846 - +0.8
516,744 - +1.1
516,744 - +0.9
516,744 - +1.2
516,748 + +0.1
516,768 - -0.6
516,820 - -0.6
516,821 - -1.0
516,821 - -3.2
516,856 + -1.4
516,861 + -1.7
516,934 - CCNA_00501 0.12 +1.2
517,036 - CCNA_00501 0.18 -0.3
517,068 + CCNA_00501 0.20 -1.7
517,164 - CCNA_00501 0.25 -2.0
517,224 - CCNA_00501 0.29 -1.3
517,229 + CCNA_00501 0.29 -0.0
517,254 - CCNA_00501 0.31 -2.8
517,317 + CCNA_00501 0.34 -0.1
517,317 + CCNA_00501 0.34 -0.4
517,392 - CCNA_00501 0.39 -2.0
517,403 - CCNA_00501 0.40 -1.5
517,473 - CCNA_00501 0.44 -1.4
517,521 + CCNA_00501 0.47 -1.0
517,586 - CCNA_00501 0.50 -1.4
517,586 - CCNA_00501 0.50 -2.1
517,671 - CCNA_00501 0.56 -0.0
517,710 - CCNA_00501 0.58 -0.4
517,710 - CCNA_00501 0.58 -2.1
517,710 - CCNA_00501 0.58 -1.3
517,710 - CCNA_00501 0.58 -0.6
517,710 - CCNA_00501 0.58 -3.1
517,716 - CCNA_00501 0.58 -0.9

Or see this region's nucleotide sequence