Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00366

Experiment: PYE with nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00365 and CCNA_00366 are separated by 353 nucleotidesCCNA_00366 and CCNA_00367 overlap by 4 nucleotides CCNA_00365: CCNA_00365 - ornithine decarboxylase, at 381,396 to 382,655 _00365 CCNA_00366: CCNA_00366 - phosphonates transport ATP-binding protein phnC, at 383,009 to 383,803 _00366 CCNA_00367: CCNA_00367 - phosphonates-binding protein, at 383,800 to 384,825 _00367 Position (kb) 383 384Strain fitness (log2 ratio) -2 -1 0 1 2 3at 382.667 kb on - strandat 382.686 kb on - strandat 382.712 kb on - strandat 382.712 kb on - strandat 382.720 kb on - strandat 382.720 kb on - strandat 382.731 kb on - strandat 382.731 kb on - strandat 382.794 kb on + strandat 382.801 kb on - strandat 382.802 kb on - strandat 382.841 kb on + strandat 382.841 kb on + strandat 382.898 kb on + strandat 382.898 kb on + strandat 382.898 kb on + strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.915 kb on - strandat 382.932 kb on + strandat 382.984 kb on - strandat 382.988 kb on + strandat 383.008 kb on - strandat 383.014 kb on + strandat 383.127 kb on + strand, within CCNA_00366at 383.145 kb on - strand, within CCNA_00366at 383.150 kb on + strand, within CCNA_00366at 383.163 kb on - strand, within CCNA_00366at 383.178 kb on + strand, within CCNA_00366at 383.179 kb on - strand, within CCNA_00366at 383.179 kb on - strand, within CCNA_00366at 383.186 kb on - strand, within CCNA_00366at 383.186 kb on - strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.230 kb on - strand, within CCNA_00366at 383.274 kb on - strand, within CCNA_00366at 383.292 kb on + strand, within CCNA_00366at 383.300 kb on - strand, within CCNA_00366at 383.320 kb on + strand, within CCNA_00366at 383.320 kb on + strand, within CCNA_00366at 383.353 kb on + strand, within CCNA_00366at 383.361 kb on - strand, within CCNA_00366at 383.361 kb on - strand, within CCNA_00366at 383.363 kb on + strand, within CCNA_00366at 383.365 kb on - strand, within CCNA_00366at 383.372 kb on + strand, within CCNA_00366at 383.406 kb on + strandat 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.427 kb on + strand, within CCNA_00366at 383.460 kb on + strand, within CCNA_00366at 383.491 kb on - strand, within CCNA_00366at 383.493 kb on + strand, within CCNA_00366at 383.495 kb on + strand, within CCNA_00366at 383.520 kb on - strand, within CCNA_00366at 383.520 kb on - strand, within CCNA_00366at 383.521 kb on + strand, within CCNA_00366at 383.546 kb on + strand, within CCNA_00366at 383.582 kb on + strand, within CCNA_00366at 383.590 kb on - strand, within CCNA_00366at 383.605 kb on + strand, within CCNA_00366at 383.618 kb on + strand, within CCNA_00366at 383.626 kb on - strand, within CCNA_00366at 383.636 kb on + strand, within CCNA_00366at 383.639 kb on - strand, within CCNA_00366at 383.644 kb on + strand, within CCNA_00366at 383.644 kb on - strand, within CCNA_00366at 383.650 kb on + strand, within CCNA_00366at 383.658 kb on - strand, within CCNA_00366at 383.658 kb on - strand, within CCNA_00366at 383.660 kb on - strand, within CCNA_00366at 383.662 kb on + strand, within CCNA_00366at 383.667 kb on + strand, within CCNA_00366at 383.675 kb on - strand, within CCNA_00366at 383.675 kb on - strand, within CCNA_00366at 383.686 kb on + strand, within CCNA_00366at 383.692 kb on - strand, within CCNA_00366at 383.704 kb on + strand, within CCNA_00366at 383.705 kb on + strand, within CCNA_00366at 383.705 kb on + strand, within CCNA_00366at 383.713 kb on - strand, within CCNA_00366at 383.760 kb on + strandat 383.787 kb on - strandat 383.829 kb on - strandat 383.839 kb on + strandat 383.845 kb on + strandat 383.845 kb on + strandat 383.853 kb on - strandat 383.853 kb on - strandat 383.853 kb on - strandat 383.864 kb on + strandat 383.869 kb on + strandat 383.869 kb on + strandat 383.877 kb on - strandat 383.922 kb on - strand, within CCNA_00367at 383.948 kb on - strand, within CCNA_00367at 383.948 kb on - strand, within CCNA_00367at 383.959 kb on - strand, within CCNA_00367at 383.971 kb on - strand, within CCNA_00367at 383.990 kb on + strand, within CCNA_00367at 383.990 kb on + strand, within CCNA_00367at 383.998 kb on - strand, within CCNA_00367at 384.004 kb on + strand, within CCNA_00367at 384.033 kb on + strand, within CCNA_00367at 384.041 kb on - strand, within CCNA_00367at 384.047 kb on + strand, within CCNA_00367at 384.061 kb on + strand, within CCNA_00367at 384.069 kb on - strand, within CCNA_00367at 384.121 kb on + strand, within CCNA_00367at 384.165 kb on - strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.214 kb on + strand, within CCNA_00367at 384.214 kb on + strand, within CCNA_00367at 384.275 kb on + strand, within CCNA_00367at 384.283 kb on + strand, within CCNA_00367at 384.290 kb on + strand, within CCNA_00367at 384.295 kb on + strand, within CCNA_00367at 384.298 kb on - strand, within CCNA_00367at 384.303 kb on - strand, within CCNA_00367at 384.342 kb on + strand, within CCNA_00367at 384.354 kb on + strand, within CCNA_00367at 384.390 kb on + strand, within CCNA_00367at 384.390 kb on + strand, within CCNA_00367at 384.403 kb on + strand, within CCNA_00367at 384.416 kb on - strand, within CCNA_00367at 384.429 kb on + strand, within CCNA_00367at 384.429 kb on + strand, within CCNA_00367at 384.432 kb on - strand, within CCNA_00367at 384.437 kb on - strand, within CCNA_00367at 384.437 kb on - strand, within CCNA_00367at 384.492 kb on + strand, within CCNA_00367at 384.507 kb on + strand, within CCNA_00367at 384.507 kb on + strand, within CCNA_00367at 384.515 kb on - strand, within CCNA_00367at 384.566 kb on + strand, within CCNA_00367at 384.574 kb on - strand, within CCNA_00367at 384.576 kb on + strand, within CCNA_00367at 384.579 kb on - strand, within CCNA_00367at 384.606 kb on + strand, within CCNA_00367at 384.611 kb on + strand, within CCNA_00367at 384.635 kb on + strand, within CCNA_00367at 384.635 kb on + strand, within CCNA_00367at 384.670 kb on - strand, within CCNA_00367at 384.670 kb on - strand, within CCNA_00367at 384.708 kb on - strand, within CCNA_00367at 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.759 kb on - strandat 384.767 kb on + strandat 384.770 kb on - strandat 384.784 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM
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382,667 - +3.3
382,686 - +2.3
382,712 - +2.3
382,712 - +2.5
382,720 - +2.4
382,720 - +3.0
382,731 - +2.4
382,731 - +2.0
382,794 + -1.3
382,801 - -1.6
382,802 - -0.2
382,841 + -0.3
382,841 + -1.5
382,898 + -0.9
382,898 + -0.3
382,898 + -1.9
382,906 - -0.8
382,906 - -1.7
382,906 - -1.9
382,906 - -0.9
382,906 - +0.6
382,906 - +0.2
382,906 - -1.0
382,915 - -1.3
382,932 + -1.4
382,984 - -1.5
382,988 + -0.0
383,008 - +0.1
383,014 + +1.2
383,127 + CCNA_00366 0.15 +1.0
383,145 - CCNA_00366 0.17 -0.2
383,150 + CCNA_00366 0.18 +1.8
383,163 - CCNA_00366 0.19 -0.4
383,178 + CCNA_00366 0.21 +1.6
383,179 - CCNA_00366 0.21 -1.7
383,179 - CCNA_00366 0.21 -2.2
383,186 - CCNA_00366 0.22 -2.4
383,186 - CCNA_00366 0.22 +0.1
383,222 + CCNA_00366 0.27 +0.5
383,222 + CCNA_00366 0.27 +1.9
383,222 + CCNA_00366 0.27 +1.9
383,222 + CCNA_00366 0.27 +0.1
383,230 - CCNA_00366 0.28 -0.6
383,274 - CCNA_00366 0.33 +0.4
383,292 + CCNA_00366 0.36 +1.0
383,300 - CCNA_00366 0.37 -0.9
383,320 + CCNA_00366 0.39 +1.4
383,320 + CCNA_00366 0.39 +0.9
383,353 + CCNA_00366 0.43 +1.1
383,361 - CCNA_00366 0.44 +1.4
383,361 - CCNA_00366 0.44 +1.1
383,363 + CCNA_00366 0.45 +1.8
383,365 - CCNA_00366 0.45 -0.9
383,372 + CCNA_00366 0.46 +1.3
383,406 + +2.2
383,417 + CCNA_00366 0.51 +1.4
383,417 + CCNA_00366 0.51 +1.7
383,417 + CCNA_00366 0.51 +0.5
383,417 + CCNA_00366 0.51 +2.0
383,427 + CCNA_00366 0.53 +1.2
383,460 + CCNA_00366 0.57 +1.2
383,491 - CCNA_00366 0.61 +1.4
383,493 + CCNA_00366 0.61 +0.7
383,495 + CCNA_00366 0.61 +1.0
383,520 - CCNA_00366 0.64 -0.3
383,520 - CCNA_00366 0.64 -1.4
383,521 + CCNA_00366 0.64 +0.8
383,546 + CCNA_00366 0.68 +3.2
383,582 + CCNA_00366 0.72 +1.4
383,590 - CCNA_00366 0.73 -0.5
383,605 + CCNA_00366 0.75 +2.1
383,618 + CCNA_00366 0.77 +2.0
383,626 - CCNA_00366 0.78 -1.4
383,636 + CCNA_00366 0.79 +1.0
383,639 - CCNA_00366 0.79 -0.3
383,644 + CCNA_00366 0.80 +1.0
383,644 - CCNA_00366 0.80 -0.4
383,650 + CCNA_00366 0.81 +1.7
383,658 - CCNA_00366 0.82 +0.3
383,658 - CCNA_00366 0.82 +2.1
383,660 - CCNA_00366 0.82 -0.7
383,662 + CCNA_00366 0.82 +2.0
383,667 + CCNA_00366 0.83 +2.0
383,675 - CCNA_00366 0.84 +0.8
383,675 - CCNA_00366 0.84 -0.0
383,686 + CCNA_00366 0.85 +1.5
383,692 - CCNA_00366 0.86 -1.1
383,704 + CCNA_00366 0.87 +1.8
383,705 + CCNA_00366 0.88 +2.4
383,705 + CCNA_00366 0.88 +1.0
383,713 - CCNA_00366 0.89 +1.2
383,760 + +2.0
383,787 - -0.2
383,829 - +0.1
383,839 + +1.5
383,845 + +1.5
383,845 + +1.0
383,853 - +1.7
383,853 - +0.3
383,853 - -1.6
383,864 + +1.6
383,869 + +1.4
383,869 + +1.5
383,877 - -2.4
383,922 - CCNA_00367 0.12 -0.5
383,948 - CCNA_00367 0.14 -1.0
383,948 - CCNA_00367 0.14 +0.0
383,959 - CCNA_00367 0.15 +1.1
383,971 - CCNA_00367 0.17 +1.6
383,990 + CCNA_00367 0.19 +1.1
383,990 + CCNA_00367 0.19 +2.7
383,998 - CCNA_00367 0.19 +1.3
384,004 + CCNA_00367 0.20 +2.6
384,033 + CCNA_00367 0.23 +2.1
384,041 - CCNA_00367 0.23 -0.1
384,047 + CCNA_00367 0.24 +1.3
384,061 + CCNA_00367 0.25 +1.3
384,069 - CCNA_00367 0.26 +0.1
384,121 + CCNA_00367 0.31 +1.7
384,165 - CCNA_00367 0.36 -1.4
384,205 + CCNA_00367 0.39 +0.9
384,205 + CCNA_00367 0.39 +2.3
384,205 + CCNA_00367 0.39 +1.2
384,205 + CCNA_00367 0.39 -0.3
384,205 + CCNA_00367 0.39 +1.7
384,205 + CCNA_00367 0.39 +1.6
384,205 + CCNA_00367 0.39 +1.2
384,213 - CCNA_00367 0.40 +1.4
384,213 - CCNA_00367 0.40 -0.9
384,213 - CCNA_00367 0.40 -1.8
384,213 - CCNA_00367 0.40 -0.2
384,213 - CCNA_00367 0.40 +0.2
384,213 - CCNA_00367 0.40 -0.4
384,213 - CCNA_00367 0.40 +0.8
384,214 + CCNA_00367 0.40 +1.2
384,214 + CCNA_00367 0.40 +1.2
384,275 + CCNA_00367 0.46 +0.9
384,283 + CCNA_00367 0.47 +2.0
384,290 + CCNA_00367 0.48 +1.2
384,295 + CCNA_00367 0.48 +0.9
384,298 - CCNA_00367 0.49 +0.4
384,303 - CCNA_00367 0.49 -0.0
384,342 + CCNA_00367 0.53 +1.5
384,354 + CCNA_00367 0.54 +1.7
384,390 + CCNA_00367 0.58 +1.2
384,390 + CCNA_00367 0.58 +1.5
384,403 + CCNA_00367 0.59 +1.7
384,416 - CCNA_00367 0.60 +0.4
384,429 + CCNA_00367 0.61 +1.5
384,429 + CCNA_00367 0.61 +0.8
384,432 - CCNA_00367 0.62 -1.6
384,437 - CCNA_00367 0.62 -0.7
384,437 - CCNA_00367 0.62 -2.2
384,492 + CCNA_00367 0.67 +1.8
384,507 + CCNA_00367 0.69 +0.3
384,507 + CCNA_00367 0.69 +1.2
384,515 - CCNA_00367 0.70 +0.1
384,566 + CCNA_00367 0.75 +1.4
384,574 - CCNA_00367 0.75 +0.6
384,576 + CCNA_00367 0.76 +1.4
384,579 - CCNA_00367 0.76 +0.2
384,606 + CCNA_00367 0.79 +1.4
384,611 + CCNA_00367 0.79 +1.9
384,635 + CCNA_00367 0.81 +1.4
384,635 + CCNA_00367 0.81 +1.6
384,670 - CCNA_00367 0.85 +1.6
384,670 - CCNA_00367 0.85 -0.2
384,708 - CCNA_00367 0.88 -1.4
384,726 + +1.4
384,726 + +1.3
384,726 + +3.0
384,726 + +1.8
384,726 + +1.6
384,726 + +2.2
384,726 + +1.5
384,726 + +2.0
384,726 + +1.5
384,734 - -1.1
384,734 - +0.1
384,734 - -1.0
384,734 - -0.2
384,734 - -0.6
384,734 - +3.2
384,759 - +0.6
384,767 + -1.1
384,770 - +0.7
384,784 + +0.7

Or see this region's nucleotide sequence