Experiment: PYE with nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00362 and CCNA_00363 are separated by 36 nucleotides CCNA_00363 and CCNA_00364 are separated by 78 nucleotides CCNA_00364 and CCNA_00365 are separated by 122 nucleotides
CCNA_00362: CCNA_00362 - zinc uptake regulation protein, at 378,802 to 379,287
_00362
CCNA_00363: CCNA_00363 - PAP2 bacterial acid phosphatase, at 379,324 to 380,100
_00363
CCNA_00364: CCNA_00364 - deoxyhypusine synthase, at 380,179 to 381,273
_00364
CCNA_00365: CCNA_00365 - ornithine decarboxylase, at 381,396 to 382,655
_00365
Position (kb) 380
381
382 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 379.285 kb on - strand at 379.285 kb on - strand at 379.288 kb on + strand at 379.324 kb on + strand at 379.324 kb on + strand at 379.330 kb on - strand at 379.332 kb on - strand at 379.334 kb on + strand at 379.342 kb on - strand at 379.342 kb on - strand at 379.342 kb on - strand at 379.454 kb on - strand, within CCNA_00363 at 379.464 kb on - strand, within CCNA_00363 at 379.486 kb on + strand, within CCNA_00363 at 379.508 kb on + strand, within CCNA_00363 at 379.514 kb on - strand, within CCNA_00363 at 379.514 kb on - strand, within CCNA_00363 at 379.544 kb on + strand, within CCNA_00363 at 379.552 kb on - strand, within CCNA_00363 at 379.557 kb on - strand, within CCNA_00363 at 379.557 kb on - strand, within CCNA_00363 at 379.557 kb on - strand, within CCNA_00363 at 379.559 kb on - strand, within CCNA_00363 at 379.561 kb on + strand, within CCNA_00363 at 379.569 kb on - strand, within CCNA_00363 at 379.569 kb on - strand, within CCNA_00363 at 379.594 kb on - strand, within CCNA_00363 at 379.602 kb on + strand, within CCNA_00363 at 379.610 kb on - strand, within CCNA_00363 at 379.742 kb on - strand, within CCNA_00363 at 379.790 kb on - strand, within CCNA_00363 at 379.881 kb on + strand, within CCNA_00363 at 379.900 kb on + strand, within CCNA_00363 at 379.902 kb on + strand, within CCNA_00363 at 379.958 kb on - strand, within CCNA_00363 at 379.958 kb on - strand, within CCNA_00363 at 379.960 kb on - strand, within CCNA_00363 at 379.981 kb on - strand, within CCNA_00363 at 380.003 kb on + strand, within CCNA_00363 at 380.011 kb on - strand, within CCNA_00363 at 380.011 kb on - strand, within CCNA_00363 at 380.011 kb on - strand, within CCNA_00363 at 380.011 kb on - strand, within CCNA_00363 at 380.056 kb on + strand at 380.061 kb on + strand at 380.069 kb on - strand at 380.069 kb on - strand at 380.107 kb on - strand at 381.303 kb on - strand at 381.303 kb on - strand at 381.303 kb on - strand at 381.303 kb on - strand at 381.365 kb on - strand at 381.365 kb on - strand at 381.435 kb on - strand at 381.459 kb on - strand at 381.459 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM remove 379,285 - +1.1 379,285 - +1.4 379,288 + +0.1 379,324 + -0.3 379,324 + -1.4 379,330 - +0.4 379,332 - -2.6 379,334 + -2.1 379,342 - -0.0 379,342 - -1.2 379,342 - -1.8 379,454 - CCNA_00363 0.17 -0.1 379,464 - CCNA_00363 0.18 -0.1 379,486 + CCNA_00363 0.21 +0.2 379,508 + CCNA_00363 0.24 -1.3 379,514 - CCNA_00363 0.24 -1.2 379,514 - CCNA_00363 0.24 +0.9 379,544 + CCNA_00363 0.28 -1.7 379,552 - CCNA_00363 0.29 +1.2 379,557 - CCNA_00363 0.30 +0.5 379,557 - CCNA_00363 0.30 +1.0 379,557 - CCNA_00363 0.30 +0.6 379,559 - CCNA_00363 0.30 +1.1 379,561 + CCNA_00363 0.31 +1.2 379,569 - CCNA_00363 0.32 +0.3 379,569 - CCNA_00363 0.32 -1.2 379,594 - CCNA_00363 0.35 +0.2 379,602 + CCNA_00363 0.36 -1.7 379,610 - CCNA_00363 0.37 +2.1 379,742 - CCNA_00363 0.54 -0.2 379,790 - CCNA_00363 0.60 +0.3 379,881 + CCNA_00363 0.72 -0.8 379,900 + CCNA_00363 0.74 -1.0 379,902 + CCNA_00363 0.74 +1.9 379,958 - CCNA_00363 0.82 -0.3 379,958 - CCNA_00363 0.82 -0.4 379,960 - CCNA_00363 0.82 -0.7 379,981 - CCNA_00363 0.85 -0.8 380,003 + CCNA_00363 0.87 +0.3 380,011 - CCNA_00363 0.88 +2.2 380,011 - CCNA_00363 0.88 +0.1 380,011 - CCNA_00363 0.88 -0.7 380,011 - CCNA_00363 0.88 +0.8 380,056 + +0.5 380,061 + +1.1 380,069 - +0.2 380,069 - -0.4 380,107 - +0.6 381,303 - +1.9 381,303 - +1.7 381,303 - +1.6 381,303 - +1.6 381,365 - +2.1 381,365 - +3.6 381,435 - +3.1 381,459 - +2.5 381,459 - +2.4
Or see this region's nucleotide sequence