Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00173

Experiment: PYE with nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00172 and CCNA_00173 overlap by 4 nucleotidesCCNA_00173 and CCNA_00174 overlap by 14 nucleotides CCNA_00172: CCNA_00172 - type II secretion pathway protein D, at 186,287 to 188,350 _00172 CCNA_00173: CCNA_00173 - type II secretion pathway protein E, at 188,347 to 189,822 _00173 CCNA_00174: CCNA_00174 - type II secretion pathway protein F, at 189,809 to 191,020 _00174 Position (kb) 188 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 187.384 kb on + strand, within CCNA_00172at 187.385 kb on + strand, within CCNA_00172at 187.390 kb on + strand, within CCNA_00172at 187.405 kb on - strand, within CCNA_00172at 187.440 kb on - strand, within CCNA_00172at 187.447 kb on - strand, within CCNA_00172at 187.455 kb on - strand, within CCNA_00172at 187.475 kb on + strand, within CCNA_00172at 187.528 kb on + strand, within CCNA_00172at 187.528 kb on + strand, within CCNA_00172at 187.528 kb on + strand, within CCNA_00172at 187.528 kb on + strand, within CCNA_00172at 187.536 kb on - strand, within CCNA_00172at 187.536 kb on - strand, within CCNA_00172at 187.536 kb on - strand, within CCNA_00172at 187.555 kb on - strand, within CCNA_00172at 187.625 kb on - strand, within CCNA_00172at 187.638 kb on - strand, within CCNA_00172at 187.653 kb on + strand, within CCNA_00172at 187.675 kb on + strandat 187.683 kb on - strand, within CCNA_00172at 187.700 kb on + strand, within CCNA_00172at 187.708 kb on - strand, within CCNA_00172at 187.764 kb on - strand, within CCNA_00172at 187.775 kb on - strand, within CCNA_00172at 187.775 kb on - strand, within CCNA_00172at 187.798 kb on - strand, within CCNA_00172at 187.804 kb on - strand, within CCNA_00172at 187.804 kb on - strand, within CCNA_00172at 187.807 kb on + strand, within CCNA_00172at 187.815 kb on - strand, within CCNA_00172at 187.815 kb on - strand, within CCNA_00172at 187.830 kb on - strand, within CCNA_00172at 187.876 kb on + strand, within CCNA_00172at 187.884 kb on - strand, within CCNA_00172at 187.901 kb on - strand, within CCNA_00172at 187.901 kb on - strand, within CCNA_00172at 187.901 kb on - strand, within CCNA_00172at 187.901 kb on - strand, within CCNA_00172at 187.927 kb on - strand, within CCNA_00172at 187.939 kb on + strand, within CCNA_00172at 187.950 kb on + strand, within CCNA_00172at 187.994 kb on + strand, within CCNA_00172at 187.997 kb on - strand, within CCNA_00172at 187.997 kb on - strand, within CCNA_00172at 188.024 kb on - strand, within CCNA_00172at 188.052 kb on - strand, within CCNA_00172at 188.060 kb on + strand, within CCNA_00172at 188.083 kb on - strand, within CCNA_00172at 188.088 kb on + strand, within CCNA_00172at 188.101 kb on - strand, within CCNA_00172at 188.110 kb on + strand, within CCNA_00172at 188.143 kb on + strand, within CCNA_00172at 188.158 kb on - strandat 188.190 kb on + strandat 188.207 kb on - strandat 188.216 kb on + strandat 188.217 kb on - strandat 188.222 kb on - strandat 188.224 kb on - strandat 188.352 kb on - strandat 188.395 kb on + strandat 188.411 kb on - strandat 188.441 kb on + strandat 188.441 kb on + strandat 188.450 kb on + strandat 188.460 kb on + strandat 188.460 kb on + strandat 188.460 kb on + strandat 188.468 kb on - strandat 188.468 kb on - strandat 188.469 kb on - strandat 188.486 kb on + strandat 188.512 kb on + strand, within CCNA_00173at 188.534 kb on + strand, within CCNA_00173at 188.541 kb on + strand, within CCNA_00173at 188.549 kb on - strand, within CCNA_00173at 188.557 kb on + strand, within CCNA_00173at 188.603 kb on + strand, within CCNA_00173at 188.611 kb on - strand, within CCNA_00173at 188.611 kb on - strand, within CCNA_00173at 188.616 kb on + strand, within CCNA_00173at 188.624 kb on - strand, within CCNA_00173at 188.625 kb on - strand, within CCNA_00173at 188.668 kb on + strand, within CCNA_00173at 188.733 kb on + strand, within CCNA_00173at 188.751 kb on + strand, within CCNA_00173at 188.752 kb on + strand, within CCNA_00173at 188.764 kb on - strand, within CCNA_00173at 188.790 kb on - strand, within CCNA_00173at 188.802 kb on - strand, within CCNA_00173at 188.838 kb on + strand, within CCNA_00173at 188.838 kb on + strand, within CCNA_00173at 188.844 kb on + strand, within CCNA_00173at 188.846 kb on - strand, within CCNA_00173at 188.846 kb on - strand, within CCNA_00173at 188.846 kb on - strand, within CCNA_00173at 188.846 kb on - strand, within CCNA_00173at 188.846 kb on - strand, within CCNA_00173at 188.846 kb on - strand, within CCNA_00173at 188.852 kb on - strandat 188.925 kb on + strand, within CCNA_00173at 188.929 kb on - strand, within CCNA_00173at 188.935 kb on + strand, within CCNA_00173at 188.971 kb on - strand, within CCNA_00173at 188.996 kb on + strand, within CCNA_00173at 189.001 kb on + strand, within CCNA_00173at 189.009 kb on - strand, within CCNA_00173at 189.011 kb on + strand, within CCNA_00173at 189.011 kb on - strand, within CCNA_00173at 189.016 kb on - strand, within CCNA_00173at 189.018 kb on + strand, within CCNA_00173at 189.020 kb on - strand, within CCNA_00173at 189.025 kb on - strand, within CCNA_00173at 189.051 kb on + strand, within CCNA_00173at 189.187 kb on + strand, within CCNA_00173at 189.199 kb on + strand, within CCNA_00173at 189.211 kb on + strand, within CCNA_00173at 189.216 kb on + strand, within CCNA_00173at 189.219 kb on - strand, within CCNA_00173at 189.222 kb on + strand, within CCNA_00173at 189.222 kb on + strand, within CCNA_00173at 189.238 kb on + strand, within CCNA_00173at 189.263 kb on + strand, within CCNA_00173at 189.281 kb on + strand, within CCNA_00173at 189.325 kb on + strand, within CCNA_00173at 189.337 kb on + strand, within CCNA_00173at 189.346 kb on + strand, within CCNA_00173at 189.403 kb on + strand, within CCNA_00173at 189.406 kb on - strand, within CCNA_00173at 189.444 kb on + strand, within CCNA_00173at 189.444 kb on + strand, within CCNA_00173at 189.452 kb on - strand, within CCNA_00173at 189.454 kb on - strand, within CCNA_00173at 189.483 kb on - strand, within CCNA_00173at 189.538 kb on + strand, within CCNA_00173at 189.552 kb on + strand, within CCNA_00173at 189.560 kb on - strand, within CCNA_00173at 189.603 kb on + strand, within CCNA_00173at 189.632 kb on + strand, within CCNA_00173at 189.637 kb on + strand, within CCNA_00173at 189.638 kb on - strand, within CCNA_00173at 189.640 kb on - strand, within CCNA_00173at 189.655 kb on + strand, within CCNA_00173at 189.663 kb on - strand, within CCNA_00173at 189.688 kb on + strandat 189.718 kb on - strandat 189.730 kb on - strandat 189.748 kb on + strandat 189.751 kb on - strandat 189.756 kb on - strandat 189.766 kb on - strandat 189.777 kb on - strandat 189.815 kb on + strandat 189.816 kb on + strandat 189.816 kb on + strandat 189.829 kb on + strandat 189.873 kb on - strandat 189.873 kb on - strandat 189.894 kb on - strandat 189.974 kb on + strand, within CCNA_00174at 189.994 kb on - strand, within CCNA_00174at 189.994 kb on - strand, within CCNA_00174at 190.050 kb on + strand, within CCNA_00174at 190.052 kb on + strand, within CCNA_00174at 190.054 kb on + strand, within CCNA_00174at 190.056 kb on + strand, within CCNA_00174at 190.066 kb on + strand, within CCNA_00174at 190.100 kb on - strand, within CCNA_00174at 190.120 kb on + strand, within CCNA_00174at 190.121 kb on - strand, within CCNA_00174at 190.133 kb on + strand, within CCNA_00174at 190.143 kb on - strand, within CCNA_00174at 190.143 kb on - strand, within CCNA_00174at 190.143 kb on - strand, within CCNA_00174at 190.161 kb on - strand, within CCNA_00174at 190.198 kb on - strand, within CCNA_00174at 190.203 kb on - strand, within CCNA_00174at 190.237 kb on + strand, within CCNA_00174at 190.280 kb on + strand, within CCNA_00174at 190.307 kb on + strand, within CCNA_00174at 190.307 kb on + strand, within CCNA_00174at 190.307 kb on + strand, within CCNA_00174at 190.307 kb on + strand, within CCNA_00174at 190.307 kb on + strand, within CCNA_00174at 190.312 kb on + strand, within CCNA_00174at 190.315 kb on - strand, within CCNA_00174at 190.315 kb on - strand, within CCNA_00174at 190.315 kb on - strand, within CCNA_00174at 190.315 kb on - strand, within CCNA_00174at 190.315 kb on - strandat 190.315 kb on - strand, within CCNA_00174at 190.320 kb on - strand, within CCNA_00174at 190.378 kb on + strand, within CCNA_00174at 190.385 kb on - strand, within CCNA_00174at 190.409 kb on + strand, within CCNA_00174at 190.417 kb on - strand, within CCNA_00174at 190.424 kb on + strand, within CCNA_00174at 190.432 kb on - strand, within CCNA_00174at 190.450 kb on + strand, within CCNA_00174at 190.457 kb on + strand, within CCNA_00174at 190.505 kb on + strand, within CCNA_00174at 190.540 kb on + strand, within CCNA_00174at 190.603 kb on + strand, within CCNA_00174at 190.624 kb on - strand, within CCNA_00174at 190.624 kb on - strand, within CCNA_00174at 190.631 kb on - strand, within CCNA_00174at 190.661 kb on + strand, within CCNA_00174at 190.661 kb on + strand, within CCNA_00174at 190.669 kb on - strand, within CCNA_00174at 190.678 kb on - strand, within CCNA_00174at 190.684 kb on - strand, within CCNA_00174at 190.694 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.696 kb on + strand, within CCNA_00174at 190.704 kb on - strand, within CCNA_00174at 190.704 kb on - strand, within CCNA_00174at 190.708 kb on + strand, within CCNA_00174at 190.709 kb on - strand, within CCNA_00174at 190.709 kb on - strand, within CCNA_00174at 190.716 kb on - strand, within CCNA_00174at 190.716 kb on - strand, within CCNA_00174at 190.762 kb on + strand, within CCNA_00174at 190.762 kb on + strand, within CCNA_00174at 190.762 kb on + strand, within CCNA_00174

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM
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187,384 + CCNA_00172 0.53 -0.4
187,385 + CCNA_00172 0.53 -1.4
187,390 + CCNA_00172 0.53 -0.1
187,405 - CCNA_00172 0.54 +1.8
187,440 - CCNA_00172 0.56 +0.3
187,447 - CCNA_00172 0.56 -0.6
187,455 - CCNA_00172 0.57 -0.9
187,475 + CCNA_00172 0.58 -0.8
187,528 + CCNA_00172 0.60 -1.4
187,528 + CCNA_00172 0.60 +0.9
187,528 + CCNA_00172 0.60 -0.5
187,528 + CCNA_00172 0.60 +1.0
187,536 - CCNA_00172 0.61 -0.0
187,536 - CCNA_00172 0.61 +0.4
187,536 - CCNA_00172 0.61 -0.6
187,555 - CCNA_00172 0.61 -1.3
187,625 - CCNA_00172 0.65 +0.1
187,638 - CCNA_00172 0.65 -1.3
187,653 + CCNA_00172 0.66 +1.0
187,675 + +0.9
187,683 - CCNA_00172 0.68 +0.3
187,700 + CCNA_00172 0.68 -1.7
187,708 - CCNA_00172 0.69 +0.6
187,764 - CCNA_00172 0.72 -1.0
187,775 - CCNA_00172 0.72 +0.9
187,775 - CCNA_00172 0.72 -0.5
187,798 - CCNA_00172 0.73 -1.3
187,804 - CCNA_00172 0.73 +0.5
187,804 - CCNA_00172 0.73 -1.1
187,807 + CCNA_00172 0.74 -0.7
187,815 - CCNA_00172 0.74 -0.5
187,815 - CCNA_00172 0.74 -0.7
187,830 - CCNA_00172 0.75 -2.2
187,876 + CCNA_00172 0.77 -0.1
187,884 - CCNA_00172 0.77 -0.2
187,901 - CCNA_00172 0.78 -0.2
187,901 - CCNA_00172 0.78 -0.5
187,901 - CCNA_00172 0.78 +0.1
187,901 - CCNA_00172 0.78 +0.4
187,927 - CCNA_00172 0.79 -1.2
187,939 + CCNA_00172 0.80 -2.4
187,950 + CCNA_00172 0.81 -0.8
187,994 + CCNA_00172 0.83 -1.7
187,997 - CCNA_00172 0.83 +0.7
187,997 - CCNA_00172 0.83 +2.7
188,024 - CCNA_00172 0.84 +1.7
188,052 - CCNA_00172 0.86 -1.3
188,060 + CCNA_00172 0.86 -0.7
188,083 - CCNA_00172 0.87 -1.6
188,088 + CCNA_00172 0.87 -0.5
188,101 - CCNA_00172 0.88 -1.3
188,110 + CCNA_00172 0.88 -1.9
188,143 + CCNA_00172 0.90 +0.1
188,158 - -0.1
188,190 + -1.6
188,207 - -0.9
188,216 + -1.4
188,217 - -0.5
188,222 - +1.5
188,224 - +0.2
188,352 - -0.5
188,395 + -2.3
188,411 - -0.3
188,441 + -0.2
188,441 + -0.2
188,450 + +0.2
188,460 + -0.6
188,460 + -0.3
188,460 + -0.2
188,468 - +0.2
188,468 - +0.1
188,469 - -0.2
188,486 + -0.1
188,512 + CCNA_00173 0.11 -2.5
188,534 + CCNA_00173 0.13 -0.1
188,541 + CCNA_00173 0.13 -1.2
188,549 - CCNA_00173 0.14 -2.0
188,557 + CCNA_00173 0.14 +1.0
188,603 + CCNA_00173 0.17 -2.2
188,611 - CCNA_00173 0.18 +0.1
188,611 - CCNA_00173 0.18 -1.9
188,616 + CCNA_00173 0.18 +1.1
188,624 - CCNA_00173 0.19 -0.5
188,625 - CCNA_00173 0.19 -0.7
188,668 + CCNA_00173 0.22 +0.7
188,733 + CCNA_00173 0.26 +0.0
188,751 + CCNA_00173 0.27 +0.7
188,752 + CCNA_00173 0.27 -2.9
188,764 - CCNA_00173 0.28 -0.3
188,790 - CCNA_00173 0.30 +0.9
188,802 - CCNA_00173 0.31 -0.4
188,838 + CCNA_00173 0.33 +0.9
188,838 + CCNA_00173 0.33 -1.3
188,844 + CCNA_00173 0.34 -1.9
188,846 - CCNA_00173 0.34 +0.1
188,846 - CCNA_00173 0.34 +0.2
188,846 - CCNA_00173 0.34 -1.8
188,846 - CCNA_00173 0.34 +1.2
188,846 - CCNA_00173 0.34 -2.2
188,846 - CCNA_00173 0.34 +0.9
188,852 - +1.2
188,925 + CCNA_00173 0.39 -1.6
188,929 - CCNA_00173 0.39 +0.9
188,935 + CCNA_00173 0.40 -3.0
188,971 - CCNA_00173 0.42 -1.6
188,996 + CCNA_00173 0.44 +0.1
189,001 + CCNA_00173 0.44 -0.2
189,009 - CCNA_00173 0.45 -1.8
189,011 + CCNA_00173 0.45 +0.1
189,011 - CCNA_00173 0.45 -1.6
189,016 - CCNA_00173 0.45 -0.8
189,018 + CCNA_00173 0.45 +0.7
189,020 - CCNA_00173 0.46 -1.7
189,025 - CCNA_00173 0.46 +0.9
189,051 + CCNA_00173 0.48 -1.8
189,187 + CCNA_00173 0.57 -0.8
189,199 + CCNA_00173 0.58 -1.0
189,211 + CCNA_00173 0.59 +0.1
189,216 + CCNA_00173 0.59 -1.8
189,219 - CCNA_00173 0.59 +0.4
189,222 + CCNA_00173 0.59 -0.9
189,222 + CCNA_00173 0.59 -0.3
189,238 + CCNA_00173 0.60 -1.3
189,263 + CCNA_00173 0.62 -2.2
189,281 + CCNA_00173 0.63 +2.2
189,325 + CCNA_00173 0.66 +1.4
189,337 + CCNA_00173 0.67 -0.5
189,346 + CCNA_00173 0.68 -1.6
189,403 + CCNA_00173 0.72 -0.8
189,406 - CCNA_00173 0.72 -2.9
189,444 + CCNA_00173 0.74 -1.9
189,444 + CCNA_00173 0.74 -1.1
189,452 - CCNA_00173 0.75 +0.4
189,454 - CCNA_00173 0.75 -0.8
189,483 - CCNA_00173 0.77 -1.0
189,538 + CCNA_00173 0.81 -0.8
189,552 + CCNA_00173 0.82 -0.2
189,560 - CCNA_00173 0.82 -1.3
189,603 + CCNA_00173 0.85 -1.5
189,632 + CCNA_00173 0.87 +1.7
189,637 + CCNA_00173 0.87 -1.7
189,638 - CCNA_00173 0.87 -0.0
189,640 - CCNA_00173 0.88 -0.8
189,655 + CCNA_00173 0.89 +0.4
189,663 - CCNA_00173 0.89 -0.3
189,688 + +0.2
189,718 - -2.2
189,730 - -1.5
189,748 + -0.2
189,751 - +0.5
189,756 - -0.9
189,766 - -0.1
189,777 - -2.2
189,815 + +0.7
189,816 + -0.9
189,816 + +0.7
189,829 + -2.5
189,873 - -0.2
189,873 - -1.8
189,894 - -0.3
189,974 + CCNA_00174 0.14 -2.2
189,994 - CCNA_00174 0.15 +0.2
189,994 - CCNA_00174 0.15 -1.1
190,050 + CCNA_00174 0.20 -0.1
190,052 + CCNA_00174 0.20 -3.0
190,054 + CCNA_00174 0.20 -0.9
190,056 + CCNA_00174 0.20 -0.8
190,066 + CCNA_00174 0.21 -0.1
190,100 - CCNA_00174 0.24 +1.5
190,120 + CCNA_00174 0.26 +0.1
190,121 - CCNA_00174 0.26 -1.8
190,133 + CCNA_00174 0.27 +0.2
190,143 - CCNA_00174 0.28 -0.7
190,143 - CCNA_00174 0.28 -0.6
190,143 - CCNA_00174 0.28 -2.2
190,161 - CCNA_00174 0.29 -0.2
190,198 - CCNA_00174 0.32 -0.5
190,203 - CCNA_00174 0.33 +0.2
190,237 + CCNA_00174 0.35 +0.7
190,280 + CCNA_00174 0.39 -1.2
190,307 + CCNA_00174 0.41 -0.2
190,307 + CCNA_00174 0.41 -0.3
190,307 + CCNA_00174 0.41 -3.3
190,307 + CCNA_00174 0.41 -1.5
190,307 + CCNA_00174 0.41 -2.9
190,312 + CCNA_00174 0.42 -0.7
190,315 - CCNA_00174 0.42 -0.2
190,315 - CCNA_00174 0.42 -2.0
190,315 - CCNA_00174 0.42 -1.3
190,315 - CCNA_00174 0.42 -0.7
190,315 - +1.7
190,315 - CCNA_00174 0.42 +0.1
190,320 - CCNA_00174 0.42 +1.5
190,378 + CCNA_00174 0.47 +0.3
190,385 - CCNA_00174 0.48 -0.2
190,409 + CCNA_00174 0.50 -0.5
190,417 - CCNA_00174 0.50 -3.1
190,424 + CCNA_00174 0.51 -0.4
190,432 - CCNA_00174 0.51 +0.7
190,450 + CCNA_00174 0.53 +0.4
190,457 + CCNA_00174 0.53 -0.9
190,505 + CCNA_00174 0.57 +0.4
190,540 + CCNA_00174 0.60 -1.3
190,603 + CCNA_00174 0.66 -1.4
190,624 - CCNA_00174 0.67 -1.4
190,624 - CCNA_00174 0.67 -0.8
190,631 - CCNA_00174 0.68 -1.8
190,661 + CCNA_00174 0.70 -0.6
190,661 + CCNA_00174 0.70 +1.1
190,669 - CCNA_00174 0.71 -1.8
190,678 - CCNA_00174 0.72 -0.6
190,684 - CCNA_00174 0.72 -0.9
190,694 + CCNA_00174 0.73 -1.3
190,696 + CCNA_00174 0.73 -1.8
190,696 + CCNA_00174 0.73 +0.9
190,696 + CCNA_00174 0.73 -0.0
190,696 + CCNA_00174 0.73 +0.1
190,696 + CCNA_00174 0.73 -1.2
190,696 + CCNA_00174 0.73 -1.6
190,704 - CCNA_00174 0.74 -1.1
190,704 - CCNA_00174 0.74 +0.4
190,708 + CCNA_00174 0.74 -1.6
190,709 - CCNA_00174 0.74 -0.1
190,709 - CCNA_00174 0.74 -0.1
190,716 - CCNA_00174 0.75 -1.7
190,716 - CCNA_00174 0.75 -1.5
190,762 + CCNA_00174 0.79 -1.5
190,762 + CCNA_00174 0.79 -0.3
190,762 + CCNA_00174 0.79 -1.8

Or see this region's nucleotide sequence