Experiment: Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS17520 and ABZR86_RS17525 are separated by 220 nucleotides ABZR86_RS17525 and ABZR86_RS17530 are separated by 253 nucleotides
ABZR86_RS17520: ABZR86_RS17520 - M1 family metallopeptidase, at 3,956,610 to 3,958,367
_RS17520
ABZR86_RS17525: ABZR86_RS17525 - DUF559 domain-containing protein, at 3,958,588 to 3,958,983
_RS17525
ABZR86_RS17530: ABZR86_RS17530 - M17 family metallopeptidase, at 3,959,237 to 3,960,610
_RS17530
Position (kb)
3958
3959 Strain fitness (log2 ratio)
-2
-1
0
1 at 3957.591 kb on - strand, within ABZR86_RS17520 at 3957.591 kb on - strand, within ABZR86_RS17520 at 3957.591 kb on - strand, within ABZR86_RS17520 at 3957.613 kb on + strand, within ABZR86_RS17520 at 3957.613 kb on + strand, within ABZR86_RS17520 at 3957.614 kb on - strand, within ABZR86_RS17520 at 3957.614 kb on - strand, within ABZR86_RS17520 at 3957.614 kb on - strand, within ABZR86_RS17520 at 3957.661 kb on + strand, within ABZR86_RS17520 at 3957.661 kb on + strand, within ABZR86_RS17520 at 3957.662 kb on - strand, within ABZR86_RS17520 at 3957.662 kb on - strand, within ABZR86_RS17520 at 3957.691 kb on + strand, within ABZR86_RS17520 at 3957.691 kb on + strand, within ABZR86_RS17520 at 3957.691 kb on + strand, within ABZR86_RS17520 at 3957.691 kb on + strand, within ABZR86_RS17520 at 3957.691 kb on + strand, within ABZR86_RS17520 at 3957.691 kb on + strand, within ABZR86_RS17520 at 3957.691 kb on + strand, within ABZR86_RS17520 at 3957.691 kb on + strand, within ABZR86_RS17520 at 3957.691 kb on + strand, within ABZR86_RS17520 at 3957.692 kb on - strand, within ABZR86_RS17520 at 3957.692 kb on - strand, within ABZR86_RS17520 at 3957.692 kb on - strand, within ABZR86_RS17520 at 3957.692 kb on - strand, within ABZR86_RS17520 at 3957.692 kb on - strand, within ABZR86_RS17520 at 3957.692 kb on - strand, within ABZR86_RS17520 at 3957.692 kb on - strand, within ABZR86_RS17520 at 3957.772 kb on + strand, within ABZR86_RS17520 at 3957.772 kb on + strand, within ABZR86_RS17520 at 3957.772 kb on + strand, within ABZR86_RS17520 at 3957.772 kb on + strand, within ABZR86_RS17520 at 3957.772 kb on + strand, within ABZR86_RS17520 at 3957.772 kb on + strand, within ABZR86_RS17520 at 3957.772 kb on + strand, within ABZR86_RS17520 at 3957.772 kb on + strand, within ABZR86_RS17520 at 3957.772 kb on + strand, within ABZR86_RS17520 at 3957.772 kb on + strand, within ABZR86_RS17520 at 3957.773 kb on - strand, within ABZR86_RS17520 at 3957.773 kb on - strand, within ABZR86_RS17520 at 3957.773 kb on - strand, within ABZR86_RS17520 at 3957.773 kb on - strand, within ABZR86_RS17520 at 3957.773 kb on - strand, within ABZR86_RS17520 at 3957.773 kb on - strand, within ABZR86_RS17520 at 3957.846 kb on + strand, within ABZR86_RS17520 at 3957.847 kb on - strand, within ABZR86_RS17520 at 3958.393 kb on + strand at 3958.393 kb on + strand at 3958.393 kb on + strand at 3958.393 kb on + strand at 3958.415 kb on + strand at 3958.416 kb on - strand at 3958.416 kb on - strand at 3958.530 kb on + strand at 3958.531 kb on - strand at 3958.555 kb on + strand at 3958.555 kb on + strand at 3958.720 kb on + strand, within ABZR86_RS17525 at 3958.721 kb on - strand, within ABZR86_RS17525 at 3958.798 kb on + strand, within ABZR86_RS17525 at 3958.798 kb on + strand, within ABZR86_RS17525 at 3958.799 kb on - strand, within ABZR86_RS17525 at 3959.104 kb on + strand at 3959.104 kb on + strand at 3959.105 kb on - strand at 3959.105 kb on - strand at 3959.105 kb on - strand at 3959.144 kb on + strand at 3959.144 kb on + strand at 3959.145 kb on - strand at 3959.145 kb on - strand at 3959.145 kb on - strand at 3959.198 kb on + strand at 3959.198 kb on + strand at 3959.198 kb on + strand at 3959.198 kb on + strand at 3959.198 kb on + strand at 3959.199 kb on - strand at 3959.199 kb on - strand at 3959.199 kb on - strand at 3959.199 kb on - strand at 3959.199 kb on - strand at 3959.199 kb on - strand at 3959.199 kb on - strand at 3959.231 kb on + strand at 3959.231 kb on + strand at 3959.231 kb on + strand at 3959.232 kb on - strand at 3959.232 kb on - strand at 3959.232 kb on - strand at 3959.334 kb on + strand at 3959.334 kb on + strand at 3959.334 kb on + strand at 3959.334 kb on + strand at 3959.335 kb on - strand at 3959.335 kb on - strand at 3959.338 kb on + strand at 3959.338 kb on + strand at 3959.385 kb on + strand, within ABZR86_RS17530 at 3959.448 kb on + strand, within ABZR86_RS17530 at 3959.448 kb on + strand, within ABZR86_RS17530 at 3959.448 kb on + strand, within ABZR86_RS17530 at 3959.448 kb on + strand, within ABZR86_RS17530 at 3959.448 kb on + strand, within ABZR86_RS17530 at 3959.449 kb on - strand, within ABZR86_RS17530 at 3959.449 kb on - strand, within ABZR86_RS17530 at 3959.652 kb on + strand, within ABZR86_RS17530
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.02 mg/ml remove 3,957,591 - ABZR86_RS17520 0.56 -0.8 3,957,591 - ABZR86_RS17520 0.56 +0.2 3,957,591 - ABZR86_RS17520 0.56 -0.1 3,957,613 + ABZR86_RS17520 0.57 -0.1 3,957,613 + ABZR86_RS17520 0.57 -0.3 3,957,614 - ABZR86_RS17520 0.57 -0.8 3,957,614 - ABZR86_RS17520 0.57 -0.4 3,957,614 - ABZR86_RS17520 0.57 +0.4 3,957,661 + ABZR86_RS17520 0.60 +0.2 3,957,661 + ABZR86_RS17520 0.60 +1.0 3,957,662 - ABZR86_RS17520 0.60 +0.0 3,957,662 - ABZR86_RS17520 0.60 -0.2 3,957,691 + ABZR86_RS17520 0.61 -0.7 3,957,691 + ABZR86_RS17520 0.61 +1.3 3,957,691 + ABZR86_RS17520 0.61 +0.1 3,957,691 + ABZR86_RS17520 0.61 +0.6 3,957,691 + ABZR86_RS17520 0.61 -0.1 3,957,691 + ABZR86_RS17520 0.61 -0.2 3,957,691 + ABZR86_RS17520 0.61 -0.2 3,957,691 + ABZR86_RS17520 0.61 +0.6 3,957,691 + ABZR86_RS17520 0.61 -0.0 3,957,692 - ABZR86_RS17520 0.62 +0.0 3,957,692 - ABZR86_RS17520 0.62 +0.1 3,957,692 - ABZR86_RS17520 0.62 +0.1 3,957,692 - ABZR86_RS17520 0.62 +0.3 3,957,692 - ABZR86_RS17520 0.62 +0.8 3,957,692 - ABZR86_RS17520 0.62 +0.0 3,957,692 - ABZR86_RS17520 0.62 +0.3 3,957,772 + ABZR86_RS17520 0.66 +0.3 3,957,772 + ABZR86_RS17520 0.66 +0.2 3,957,772 + ABZR86_RS17520 0.66 -1.3 3,957,772 + ABZR86_RS17520 0.66 -0.7 3,957,772 + ABZR86_RS17520 0.66 +0.2 3,957,772 + ABZR86_RS17520 0.66 +0.3 3,957,772 + ABZR86_RS17520 0.66 +0.4 3,957,772 + ABZR86_RS17520 0.66 +0.3 3,957,772 + ABZR86_RS17520 0.66 -0.2 3,957,772 + ABZR86_RS17520 0.66 -1.9 3,957,773 - ABZR86_RS17520 0.66 -0.0 3,957,773 - ABZR86_RS17520 0.66 +0.2 3,957,773 - ABZR86_RS17520 0.66 +0.4 3,957,773 - ABZR86_RS17520 0.66 -0.1 3,957,773 - ABZR86_RS17520 0.66 -0.1 3,957,773 - ABZR86_RS17520 0.66 -0.4 3,957,846 + ABZR86_RS17520 0.70 -0.4 3,957,847 - ABZR86_RS17520 0.70 -0.8 3,958,393 + -0.2 3,958,393 + +0.3 3,958,393 + -0.5 3,958,393 + -0.2 3,958,415 + +1.2 3,958,416 - +0.5 3,958,416 - +0.3 3,958,530 + -0.4 3,958,531 - -1.4 3,958,555 + +0.0 3,958,555 + +0.2 3,958,720 + ABZR86_RS17525 0.33 +0.5 3,958,721 - ABZR86_RS17525 0.34 +0.8 3,958,798 + ABZR86_RS17525 0.53 -0.3 3,958,798 + ABZR86_RS17525 0.53 +0.6 3,958,799 - ABZR86_RS17525 0.53 -0.7 3,959,104 + +0.1 3,959,104 + +0.7 3,959,105 - -0.1 3,959,105 - +0.3 3,959,105 - -0.3 3,959,144 + -0.7 3,959,144 + +0.1 3,959,145 - -0.9 3,959,145 - -0.4 3,959,145 - +0.1 3,959,198 + -1.1 3,959,198 + +0.8 3,959,198 + -0.2 3,959,198 + -1.1 3,959,198 + -0.3 3,959,199 - -1.3 3,959,199 - +0.2 3,959,199 - +0.2 3,959,199 - +0.5 3,959,199 - -0.5 3,959,199 - -0.1 3,959,199 - -0.1 3,959,231 + +0.8 3,959,231 + -0.2 3,959,231 + +0.6 3,959,232 - -0.3 3,959,232 - +0.2 3,959,232 - +0.1 3,959,334 + +0.1 3,959,334 + +0.2 3,959,334 + +0.8 3,959,334 + -1.7 3,959,335 - -0.5 3,959,335 - -0.0 3,959,338 + +0.3 3,959,338 + +0.0 3,959,385 + ABZR86_RS17530 0.11 +0.7 3,959,448 + ABZR86_RS17530 0.15 -1.1 3,959,448 + ABZR86_RS17530 0.15 -0.2 3,959,448 + ABZR86_RS17530 0.15 +0.0 3,959,448 + ABZR86_RS17530 0.15 -1.1 3,959,448 + ABZR86_RS17530 0.15 +0.0 3,959,449 - ABZR86_RS17530 0.15 -1.2 3,959,449 - ABZR86_RS17530 0.15 +0.5 3,959,652 + ABZR86_RS17530 0.30 -0.4
Or see this region's nucleotide sequence