Experiment: Carbenicillin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS14620 and ABZR86_RS14625 are separated by 222 nucleotides ABZR86_RS14625 and ABZR86_RS14630 are separated by 558 nucleotides
ABZR86_RS14620: ABZR86_RS14620 - response regulator transcription factor, at 3,269,766 to 3,270,401
_RS14620
ABZR86_RS14625: ABZR86_RS14625 - EF-hand domain-containing protein, at 3,270,624 to 3,270,935
_RS14625
ABZR86_RS14630: ABZR86_RS14630 - serine protease, at 3,271,494 to 3,273,470
_RS14630
Position (kb)
3270
3271 Strain fitness (log2 ratio)
-1
0
1 at 3270.017 kb on + strand, within ABZR86_RS14620 at 3270.109 kb on + strand, within ABZR86_RS14620 at 3270.110 kb on - strand, within ABZR86_RS14620 at 3270.111 kb on + strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620 at 3270.312 kb on + strand, within ABZR86_RS14620 at 3270.313 kb on - strand, within ABZR86_RS14620 at 3270.431 kb on + strand at 3270.435 kb on - strand at 3270.435 kb on - strand at 3270.439 kb on + strand at 3270.439 kb on + strand at 3270.439 kb on + strand at 3270.439 kb on + strand at 3270.440 kb on - strand at 3270.440 kb on - strand at 3270.440 kb on - strand at 3270.462 kb on + strand at 3270.463 kb on - strand at 3270.463 kb on - strand at 3270.705 kb on + strand, within ABZR86_RS14625 at 3270.716 kb on + strand, within ABZR86_RS14625 at 3270.961 kb on - strand at 3270.961 kb on - strand at 3270.961 kb on - strand at 3270.964 kb on - strand at 3271.477 kb on + strand at 3271.495 kb on + strand at 3271.496 kb on - strand at 3271.591 kb on + strand at 3271.591 kb on + strand at 3271.592 kb on - strand at 3271.596 kb on - strand at 3271.712 kb on - strand, within ABZR86_RS14630 at 3271.857 kb on + strand, within ABZR86_RS14630 at 3271.858 kb on - strand, within ABZR86_RS14630 at 3271.930 kb on + strand, within ABZR86_RS14630 at 3271.930 kb on + strand, within ABZR86_RS14630 at 3271.930 kb on + strand, within ABZR86_RS14630
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.02 mg/ml remove 3,270,017 + ABZR86_RS14620 0.39 +1.3 3,270,109 + ABZR86_RS14620 0.54 -1.4 3,270,110 - ABZR86_RS14620 0.54 -0.4 3,270,111 + ABZR86_RS14620 0.54 -0.2 3,270,112 - ABZR86_RS14620 0.54 +0.2 3,270,112 - ABZR86_RS14620 0.54 +0.7 3,270,112 - ABZR86_RS14620 0.54 +0.3 3,270,112 - ABZR86_RS14620 0.54 +0.5 3,270,312 + ABZR86_RS14620 0.86 -0.6 3,270,313 - ABZR86_RS14620 0.86 +0.1 3,270,431 + -0.4 3,270,435 - -0.1 3,270,435 - -0.5 3,270,439 + -0.8 3,270,439 + +0.2 3,270,439 + -0.6 3,270,439 + +1.0 3,270,440 - -0.3 3,270,440 - -0.2 3,270,440 - +0.3 3,270,462 + -0.0 3,270,463 - -0.8 3,270,463 - -0.1 3,270,705 + ABZR86_RS14625 0.26 +0.3 3,270,716 + ABZR86_RS14625 0.29 +0.0 3,270,961 - +0.1 3,270,961 - +0.2 3,270,961 - -0.1 3,270,964 - -0.3 3,271,477 + -1.0 3,271,495 + -0.1 3,271,496 - +0.3 3,271,591 + -0.6 3,271,591 + +0.1 3,271,592 - -0.6 3,271,596 - -0.9 3,271,712 - ABZR86_RS14630 0.11 +0.8 3,271,857 + ABZR86_RS14630 0.18 +0.0 3,271,858 - ABZR86_RS14630 0.18 -0.2 3,271,930 + ABZR86_RS14630 0.22 -0.5 3,271,930 + ABZR86_RS14630 0.22 -0.3 3,271,930 + ABZR86_RS14630 0.22 +0.0
Or see this region's nucleotide sequence