Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10100

Experiment: Carbenicillin 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10090 and ABZR86_RS10095 overlap by 1 nucleotidesABZR86_RS10095 and ABZR86_RS10100 are separated by 7 nucleotidesABZR86_RS10100 and ABZR86_RS10105 are separated by 82 nucleotidesABZR86_RS10105 and ABZR86_RS10110 are separated by 123 nucleotides ABZR86_RS10090: ABZR86_RS10090 - TPM domain-containing protein, at 2,242,226 to 2,242,729 _RS10090 ABZR86_RS10095: ABZR86_RS10095 - TPM domain-containing protein, at 2,242,729 to 2,243,622 _RS10095 ABZR86_RS10100: ABZR86_RS10100 - LemA family protein, at 2,243,630 to 2,244,250 _RS10100 ABZR86_RS10105: ABZR86_RS10105 - diacylglycerol kinase, at 2,244,333 to 2,244,707 _RS10105 ABZR86_RS10110: ABZR86_RS10110 - ATP-binding protein, at 2,244,831 to 2,246,117 _RS10110 Position (kb) 2243 2244 2245Strain fitness (log2 ratio) -2 -1 0 1 2at 2243.186 kb on + strand, within ABZR86_RS10095at 2243.186 kb on + strand, within ABZR86_RS10095at 2243.190 kb on - strand, within ABZR86_RS10095at 2243.190 kb on - strand, within ABZR86_RS10095at 2243.219 kb on + strand, within ABZR86_RS10095at 2243.219 kb on + strand, within ABZR86_RS10095at 2243.381 kb on + strand, within ABZR86_RS10095at 2243.381 kb on + strand, within ABZR86_RS10095at 2243.381 kb on + strand, within ABZR86_RS10095at 2243.381 kb on + strand, within ABZR86_RS10095at 2243.382 kb on - strand, within ABZR86_RS10095at 2243.382 kb on - strand, within ABZR86_RS10095at 2243.382 kb on - strand, within ABZR86_RS10095at 2243.382 kb on - strand, within ABZR86_RS10095at 2243.382 kb on - strand, within ABZR86_RS10095at 2243.790 kb on + strand, within ABZR86_RS10100at 2243.790 kb on + strand, within ABZR86_RS10100at 2243.790 kb on + strand, within ABZR86_RS10100at 2243.790 kb on + strand, within ABZR86_RS10100at 2243.790 kb on + strand, within ABZR86_RS10100at 2243.790 kb on + strand, within ABZR86_RS10100at 2243.791 kb on - strand, within ABZR86_RS10100at 2243.791 kb on - strand, within ABZR86_RS10100at 2243.791 kb on - strand, within ABZR86_RS10100at 2243.791 kb on - strand, within ABZR86_RS10100at 2243.811 kb on + strand, within ABZR86_RS10100at 2243.811 kb on + strand, within ABZR86_RS10100at 2243.811 kb on + strand, within ABZR86_RS10100at 2243.901 kb on + strand, within ABZR86_RS10100at 2243.901 kb on + strand, within ABZR86_RS10100at 2243.902 kb on - strand, within ABZR86_RS10100at 2243.902 kb on - strand, within ABZR86_RS10100at 2243.902 kb on - strand, within ABZR86_RS10100at 2244.126 kb on + strand, within ABZR86_RS10100at 2244.189 kb on + strandat 2244.189 kb on + strandat 2244.190 kb on - strandat 2244.707 kb on + strandat 2244.707 kb on + strandat 2244.707 kb on + strandat 2244.707 kb on + strandat 2244.707 kb on + strandat 2244.707 kb on + strandat 2244.707 kb on + strandat 2244.707 kb on + strandat 2244.707 kb on + strandat 2244.708 kb on - strandat 2244.708 kb on - strandat 2244.708 kb on - strandat 2244.708 kb on - strandat 2244.708 kb on - strandat 2244.711 kb on + strandat 2244.711 kb on + strandat 2244.711 kb on + strandat 2244.711 kb on + strandat 2244.711 kb on + strandat 2244.711 kb on + strandat 2244.711 kb on + strandat 2244.712 kb on - strandat 2244.712 kb on - strandat 2244.712 kb on - strandat 2244.712 kb on - strandat 2244.712 kb on - strandat 2244.712 kb on - strandat 2244.712 kb on - strandat 2244.712 kb on - strandat 2244.712 kb on - strandat 2244.712 kb on - strandat 2244.712 kb on - strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.713 kb on + strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.714 kb on - strandat 2244.789 kb on + strandat 2244.818 kb on + strandat 2245.017 kb on + strand, within ABZR86_RS10110at 2245.017 kb on + strand, within ABZR86_RS10110at 2245.017 kb on + strand, within ABZR86_RS10110at 2245.233 kb on + strand, within ABZR86_RS10110at 2245.233 kb on + strand, within ABZR86_RS10110at 2245.233 kb on + strand, within ABZR86_RS10110at 2245.233 kb on + strand, within ABZR86_RS10110at 2245.233 kb on + strand, within ABZR86_RS10110

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.02 mg/ml
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2,243,186 + ABZR86_RS10095 0.51 -0.6
2,243,186 + ABZR86_RS10095 0.51 -0.7
2,243,190 - ABZR86_RS10095 0.52 +0.0
2,243,190 - ABZR86_RS10095 0.52 +0.5
2,243,219 + ABZR86_RS10095 0.55 -0.2
2,243,219 + ABZR86_RS10095 0.55 -0.0
2,243,381 + ABZR86_RS10095 0.73 -0.3
2,243,381 + ABZR86_RS10095 0.73 -0.7
2,243,381 + ABZR86_RS10095 0.73 -0.0
2,243,381 + ABZR86_RS10095 0.73 -0.2
2,243,382 - ABZR86_RS10095 0.73 -0.0
2,243,382 - ABZR86_RS10095 0.73 -0.6
2,243,382 - ABZR86_RS10095 0.73 -0.2
2,243,382 - ABZR86_RS10095 0.73 -0.6
2,243,382 - ABZR86_RS10095 0.73 -0.1
2,243,790 + ABZR86_RS10100 0.26 +0.6
2,243,790 + ABZR86_RS10100 0.26 +1.2
2,243,790 + ABZR86_RS10100 0.26 -0.3
2,243,790 + ABZR86_RS10100 0.26 +0.2
2,243,790 + ABZR86_RS10100 0.26 -0.3
2,243,790 + ABZR86_RS10100 0.26 +0.4
2,243,791 - ABZR86_RS10100 0.26 +0.3
2,243,791 - ABZR86_RS10100 0.26 -0.0
2,243,791 - ABZR86_RS10100 0.26 +1.3
2,243,791 - ABZR86_RS10100 0.26 -0.1
2,243,811 + ABZR86_RS10100 0.29 -0.1
2,243,811 + ABZR86_RS10100 0.29 +0.5
2,243,811 + ABZR86_RS10100 0.29 +0.7
2,243,901 + ABZR86_RS10100 0.44 +0.5
2,243,901 + ABZR86_RS10100 0.44 +0.4
2,243,902 - ABZR86_RS10100 0.44 +0.2
2,243,902 - ABZR86_RS10100 0.44 +1.4
2,243,902 - ABZR86_RS10100 0.44 +2.2
2,244,126 + ABZR86_RS10100 0.80 +0.5
2,244,189 + -0.3
2,244,189 + -0.7
2,244,190 - -0.7
2,244,707 + -1.3
2,244,707 + -0.2
2,244,707 + -0.0
2,244,707 + -0.9
2,244,707 + -0.3
2,244,707 + -0.1
2,244,707 + -1.4
2,244,707 + +0.1
2,244,707 + -0.6
2,244,708 - -0.3
2,244,708 - +0.5
2,244,708 - -0.4
2,244,708 - +0.0
2,244,708 - +0.2
2,244,711 + +0.0
2,244,711 + -0.6
2,244,711 + -2.6
2,244,711 + +0.3
2,244,711 + +0.4
2,244,711 + -0.9
2,244,711 + -0.5
2,244,712 - +0.2
2,244,712 - +0.2
2,244,712 - -0.6
2,244,712 - -0.2
2,244,712 - -0.8
2,244,712 - +0.2
2,244,712 - -0.2
2,244,712 - +0.3
2,244,712 - +0.4
2,244,712 - -0.1
2,244,712 - -0.1
2,244,713 + -0.1
2,244,713 + +0.2
2,244,713 + +0.3
2,244,713 + -1.3
2,244,713 + -0.4
2,244,713 + -0.5
2,244,713 + -0.6
2,244,713 + -0.3
2,244,713 + -1.3
2,244,713 + -0.7
2,244,713 + -1.3
2,244,713 + -0.5
2,244,713 + -0.7
2,244,713 + -0.1
2,244,713 + +0.6
2,244,714 - +0.2
2,244,714 - +0.1
2,244,714 - +1.5
2,244,714 - +0.3
2,244,714 - -0.2
2,244,714 - -0.7
2,244,714 - +1.0
2,244,714 - -1.0
2,244,714 - +0.6
2,244,714 - -0.1
2,244,714 - -0.3
2,244,714 - -0.3
2,244,714 - -0.2
2,244,714 - -0.2
2,244,714 - -0.2
2,244,714 - -0.3
2,244,714 - -0.2
2,244,789 + -0.1
2,244,818 + -0.1
2,245,017 + ABZR86_RS10110 0.14 +1.1
2,245,017 + ABZR86_RS10110 0.14 +0.2
2,245,017 + ABZR86_RS10110 0.14 -0.0
2,245,233 + ABZR86_RS10110 0.31 -1.2
2,245,233 + ABZR86_RS10110 0.31 -0.8
2,245,233 + ABZR86_RS10110 0.31 -1.1
2,245,233 + ABZR86_RS10110 0.31 -0.4
2,245,233 + ABZR86_RS10110 0.31 -1.5

Or see this region's nucleotide sequence