Experiment: Pectin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0297 and BT0298 are separated by 7 nucleotides BT0298 and BT0299 are separated by 48 nucleotides
BT0297: BT0297 - putative outer membrane lipoprotein silC precursor (NCBI ptt file), at 349,074 to 350,570
BT0297
BT0298: BT0298 - cation efflux system protein (outer membrane protein) (NCBI ptt file), at 350,578 to 351,639
BT0298
BT0299: BT0299 - cation efflux system (AcrB/AcrD/AcrF family) (NCBI ptt file), at 351,688 to 354,804
BT0299
Position (kb) 350
351
352 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 349.579 kb on + strand, within BT0297 at 349.604 kb on + strand, within BT0297 at 349.682 kb on + strand, within BT0297 at 349.729 kb on - strand, within BT0297 at 350.002 kb on + strand, within BT0297 at 350.359 kb on - strand, within BT0297 at 350.480 kb on - strand at 350.485 kb on + strand at 350.668 kb on - strand at 350.730 kb on + strand, within BT0298 at 350.756 kb on - strand, within BT0298 at 350.756 kb on - strand, within BT0298 at 350.864 kb on + strand, within BT0298 at 351.007 kb on - strand, within BT0298 at 351.172 kb on + strand, within BT0298 at 351.185 kb on - strand, within BT0298 at 351.247 kb on - strand, within BT0298 at 351.507 kb on - strand, within BT0298 at 351.539 kb on - strand at 351.539 kb on - strand at 351.638 kb on - strand at 351.654 kb on - strand at 351.655 kb on + strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.740 kb on + strand at 351.770 kb on + strand at 351.775 kb on + strand at 351.814 kb on - strand at 351.888 kb on + strand at 351.969 kb on - strand at 351.973 kb on + strand at 351.973 kb on + strand at 351.974 kb on - strand at 351.974 kb on - strand at 351.975 kb on + strand at 352.050 kb on + strand, within BT0299 at 352.050 kb on + strand, within BT0299 at 352.128 kb on + strand, within BT0299 at 352.166 kb on - strand, within BT0299 at 352.239 kb on + strand, within BT0299 at 352.259 kb on - strand, within BT0299 at 352.261 kb on - strand, within BT0299 at 352.294 kb on - strand, within BT0299 at 352.363 kb on + strand, within BT0299 at 352.363 kb on + strand, within BT0299 at 352.494 kb on + strand, within BT0299 at 352.582 kb on - strand, within BT0299 at 352.625 kb on + strand, within BT0299
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin (C) remove 349,579 + BT0297 0.34 -0.9 349,604 + BT0297 0.35 -0.2 349,682 + BT0297 0.41 -2.5 349,729 - BT0297 0.44 -0.5 350,002 + BT0297 0.62 -1.2 350,359 - BT0297 0.86 -1.6 350,480 - +0.3 350,485 + -2.1 350,668 - -1.0 350,730 + BT0298 0.14 -1.4 350,756 - BT0298 0.17 -1.6 350,756 - BT0298 0.17 -0.7 350,864 + BT0298 0.27 +0.0 351,007 - BT0298 0.40 -1.0 351,172 + BT0298 0.56 +0.6 351,185 - BT0298 0.57 -1.0 351,247 - BT0298 0.63 -1.2 351,507 - BT0298 0.87 -1.8 351,539 - +1.6 351,539 - -1.0 351,638 - +1.6 351,654 - -2.9 351,655 + -1.4 351,656 - -0.6 351,656 - -1.4 351,740 + +0.6 351,770 + -1.5 351,775 + -0.7 351,814 - +0.6 351,888 + -0.4 351,969 - -0.7 351,973 + -1.0 351,973 + -1.2 351,974 - +0.3 351,974 - -2.3 351,975 + -0.9 352,050 + BT0299 0.12 -1.0 352,050 + BT0299 0.12 -0.4 352,128 + BT0299 0.14 -1.0 352,166 - BT0299 0.15 -0.3 352,239 + BT0299 0.18 -1.6 352,259 - BT0299 0.18 +0.0 352,261 - BT0299 0.18 +0.0 352,294 - BT0299 0.19 -2.2 352,363 + BT0299 0.22 +0.6 352,363 + BT0299 0.22 -1.9 352,494 + BT0299 0.26 +0.0 352,582 - BT0299 0.29 -0.6 352,625 + BT0299 0.30 -1.4
Or see this region's nucleotide sequence