Experiment: Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cobA and Synpcc7942_2611 are separated by 42 nucleotides Synpcc7942_2611 and thrC are separated by 70 nucleotides thrC and cbbZp are separated by 120 nucleotides
Synpcc7942_2610: cobA - uroporphyrin-III C-methyltransferase, at 2,692,153 to 2,692,950
cobA
Synpcc7942_2611: Synpcc7942_2611 - hypothetical protein, at 2,692,993 to 2,693,757
_2611
Synpcc7942_2612: thrC - threonine synthase, at 2,693,828 to 2,694,928
thrC
Synpcc7942_2613: cbbZp - phosphoglycolate phosphatase, at 2,695,049 to 2,695,870
cbbZp
Position (kb)
2693
2694
2695 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2692.944 kb on + strand at 2693.014 kb on + strand at 2693.697 kb on + strand at 2693.697 kb on + strand at 2693.697 kb on + strand at 2693.705 kb on - strand at 2693.705 kb on - strand at 2693.705 kb on - strand at 2693.705 kb on - strand at 2693.705 kb on - strand at 2693.720 kb on + strand at 2693.728 kb on - strand at 2693.728 kb on - strand at 2693.737 kb on + strand at 2693.750 kb on - strand at 2693.750 kb on - strand at 2694.965 kb on - strand at 2695.084 kb on + strand at 2695.085 kb on + strand at 2695.085 kb on + strand at 2695.087 kb on - strand at 2695.093 kb on - strand at 2695.108 kb on + strand at 2695.108 kb on + strand at 2695.116 kb on - strand at 2695.116 kb on - strand at 2695.116 kb on - strand at 2695.126 kb on - strand at 2695.127 kb on - strand at 2695.136 kb on - strand, within cbbZp at 2695.149 kb on + strand, within cbbZp at 2695.157 kb on - strand, within cbbZp at 2695.178 kb on + strand, within cbbZp at 2695.205 kb on + strand, within cbbZp at 2695.220 kb on + strand, within cbbZp at 2695.223 kb on + strand, within cbbZp at 2695.231 kb on - strand, within cbbZp at 2695.231 kb on - strand, within cbbZp at 2695.246 kb on - strand, within cbbZp at 2695.273 kb on - strand, within cbbZp at 2695.280 kb on - strand, within cbbZp at 2695.280 kb on - strand at 2695.280 kb on - strand, within cbbZp at 2695.281 kb on - strand, within cbbZp at 2695.294 kb on + strand, within cbbZp at 2695.311 kb on + strand, within cbbZp at 2695.311 kb on + strand, within cbbZp at 2695.325 kb on + strand, within cbbZp at 2695.330 kb on + strand, within cbbZp at 2695.384 kb on + strand, within cbbZp at 2695.384 kb on + strand, within cbbZp at 2695.389 kb on + strand, within cbbZp at 2695.392 kb on - strand, within cbbZp at 2695.397 kb on - strand, within cbbZp at 2695.423 kb on + strand, within cbbZp at 2695.432 kb on + strand, within cbbZp at 2695.432 kb on - strand, within cbbZp at 2695.440 kb on - strand, within cbbZp at 2695.458 kb on + strand, within cbbZp at 2695.488 kb on - strand, within cbbZp at 2695.492 kb on - strand, within cbbZp at 2695.514 kb on + strand, within cbbZp at 2695.521 kb on + strand, within cbbZp at 2695.529 kb on + strand, within cbbZp at 2695.529 kb on + strand, within cbbZp at 2695.535 kb on - strand, within cbbZp at 2695.537 kb on - strand, within cbbZp at 2695.569 kb on + strand, within cbbZp at 2695.571 kb on + strand, within cbbZp at 2695.588 kb on + strand, within cbbZp at 2695.695 kb on + strand, within cbbZp at 2695.703 kb on - strand, within cbbZp at 2695.715 kb on - strand, within cbbZp at 2695.738 kb on + strand, within cbbZp at 2695.764 kb on + strand, within cbbZp at 2695.788 kb on - strand at 2695.815 kb on - strand at 2695.817 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 20 mM remove 2,692,944 + -1.1 2,693,014 + -3.3 2,693,697 + +2.0 2,693,697 + +1.2 2,693,697 + +0.1 2,693,705 - +0.3 2,693,705 - +0.4 2,693,705 - -0.3 2,693,705 - +1.3 2,693,705 - +3.8 2,693,720 + +0.0 2,693,728 - -3.3 2,693,728 - -1.3 2,693,737 + -2.3 2,693,750 - -4.1 2,693,750 - +1.5 2,694,965 - +1.0 2,695,084 + -2.3 2,695,085 + +0.8 2,695,085 + -1.3 2,695,087 - -0.4 2,695,093 - +0.3 2,695,108 + +0.1 2,695,108 + +0.8 2,695,116 - -0.7 2,695,116 - -0.7 2,695,116 - +1.2 2,695,126 - -0.4 2,695,127 - +2.3 2,695,136 - cbbZp Synpcc7942_2613 0.11 -1.0 2,695,149 + cbbZp Synpcc7942_2613 0.12 -0.3 2,695,157 - cbbZp Synpcc7942_2613 0.13 -2.3 2,695,178 + cbbZp Synpcc7942_2613 0.16 +0.7 2,695,205 + cbbZp Synpcc7942_2613 0.19 -1.3 2,695,220 + cbbZp Synpcc7942_2613 0.21 +2.1 2,695,223 + cbbZp Synpcc7942_2613 0.21 -1.9 2,695,231 - cbbZp Synpcc7942_2613 0.22 -0.1 2,695,231 - cbbZp Synpcc7942_2613 0.22 +1.5 2,695,246 - cbbZp Synpcc7942_2613 0.24 -1.9 2,695,273 - cbbZp Synpcc7942_2613 0.27 -0.3 2,695,280 - cbbZp Synpcc7942_2613 0.28 -2.3 2,695,280 - -1.3 2,695,280 - cbbZp Synpcc7942_2613 0.28 -0.1 2,695,281 - cbbZp Synpcc7942_2613 0.28 -1.0 2,695,294 + cbbZp Synpcc7942_2613 0.30 +0.7 2,695,311 + cbbZp Synpcc7942_2613 0.32 +0.7 2,695,311 + cbbZp Synpcc7942_2613 0.32 -1.3 2,695,325 + cbbZp Synpcc7942_2613 0.34 -2.3 2,695,330 + cbbZp Synpcc7942_2613 0.34 -0.3 2,695,384 + cbbZp Synpcc7942_2613 0.41 -1.9 2,695,384 + cbbZp Synpcc7942_2613 0.41 -2.3 2,695,389 + cbbZp Synpcc7942_2613 0.41 -1.1 2,695,392 - cbbZp Synpcc7942_2613 0.42 +0.1 2,695,397 - cbbZp Synpcc7942_2613 0.42 +0.6 2,695,423 + cbbZp Synpcc7942_2613 0.45 +0.2 2,695,432 + cbbZp Synpcc7942_2613 0.47 -0.3 2,695,432 - cbbZp Synpcc7942_2613 0.47 -0.3 2,695,440 - cbbZp Synpcc7942_2613 0.48 +1.5 2,695,458 + cbbZp Synpcc7942_2613 0.50 +0.0 2,695,488 - cbbZp Synpcc7942_2613 0.53 +1.0 2,695,492 - cbbZp Synpcc7942_2613 0.54 -1.3 2,695,514 + cbbZp Synpcc7942_2613 0.57 -3.9 2,695,521 + cbbZp Synpcc7942_2613 0.57 -0.1 2,695,529 + cbbZp Synpcc7942_2613 0.58 -1.3 2,695,529 + cbbZp Synpcc7942_2613 0.58 +2.3 2,695,535 - cbbZp Synpcc7942_2613 0.59 +1.5 2,695,537 - cbbZp Synpcc7942_2613 0.59 -0.3 2,695,569 + cbbZp Synpcc7942_2613 0.63 +0.9 2,695,571 + cbbZp Synpcc7942_2613 0.64 +1.0 2,695,588 + cbbZp Synpcc7942_2613 0.66 -2.9 2,695,695 + cbbZp Synpcc7942_2613 0.79 +0.7 2,695,703 - cbbZp Synpcc7942_2613 0.80 +0.7 2,695,715 - cbbZp Synpcc7942_2613 0.81 -0.7 2,695,738 + cbbZp Synpcc7942_2613 0.84 -0.3 2,695,764 + cbbZp Synpcc7942_2613 0.87 -1.3 2,695,788 - +0.8 2,695,815 - +1.0 2,695,817 + +1.5
Or see this region's nucleotide sequence