Experiment: Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tyrS and mrcA are separated by 69 nucleotides mrcA and Synpcc7942_2572 are separated by 80 nucleotides Synpcc7942_2572 and mntB are separated by 138 nucleotides
Synpcc7942_2570: tyrS - tyrosyl-tRNA synthetase, at 2,648,824 to 2,650,032
tyrS
Synpcc7942_2571: mrcA - Penicillin-binding protein 1A, at 2,650,102 to 2,651,979
mrcA
Synpcc7942_2572: Synpcc7942_2572 - hypothetical protein, at 2,652,060 to 2,652,377
_2572
Synpcc7942_2573: mntB - manganese transport system membrane protein MntB, at 2,652,516 to 2,653,346
mntB
Position (kb)
2650
2651
2652 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2650.042 kb on + strand at 2650.052 kb on - strand at 2650.069 kb on + strand at 2650.098 kb on + strand at 2650.107 kb on - strand at 2650.109 kb on + strand at 2650.118 kb on - strand at 2650.123 kb on + strand at 2650.123 kb on + strand at 2650.131 kb on - strand at 2650.131 kb on - strand at 2650.131 kb on - strand at 2650.131 kb on - strand at 2650.168 kb on + strand at 2650.176 kb on - strand at 2650.196 kb on + strand at 2650.201 kb on + strand at 2650.201 kb on + strand at 2650.201 kb on + strand at 2650.201 kb on + strand at 2650.201 kb on + strand at 2650.201 kb on + strand at 2650.201 kb on + strand at 2650.204 kb on - strand at 2650.209 kb on - strand at 2650.209 kb on - strand at 2650.209 kb on - strand at 2650.209 kb on - strand at 2650.209 kb on - strand at 2650.210 kb on - strand at 2650.213 kb on + strand at 2650.213 kb on + strand at 2650.228 kb on - strand at 2650.238 kb on + strand at 2650.246 kb on - strand at 2650.246 kb on - strand at 2650.246 kb on - strand at 2650.249 kb on + strand at 2650.275 kb on - strand at 2650.276 kb on + strand at 2650.284 kb on - strand at 2650.307 kb on + strand, within mrcA at 2650.308 kb on - strand, within mrcA at 2650.320 kb on + strand, within mrcA at 2650.338 kb on - strand, within mrcA at 2650.389 kb on - strand, within mrcA at 2650.429 kb on - strand, within mrcA at 2650.429 kb on - strand, within mrcA at 2650.429 kb on - strand, within mrcA at 2650.474 kb on - strand, within mrcA at 2650.480 kb on + strand, within mrcA at 2650.480 kb on + strand, within mrcA at 2650.495 kb on + strand, within mrcA at 2650.501 kb on + strand, within mrcA at 2650.564 kb on - strand, within mrcA at 2650.569 kb on + strand, within mrcA at 2650.635 kb on + strand, within mrcA at 2650.637 kb on - strand, within mrcA at 2650.653 kb on + strand, within mrcA at 2650.653 kb on + strand, within mrcA at 2650.661 kb on - strand, within mrcA at 2650.715 kb on + strand, within mrcA at 2650.722 kb on + strand, within mrcA at 2650.723 kb on - strand, within mrcA at 2650.736 kb on - strand, within mrcA at 2650.758 kb on + strand, within mrcA at 2650.758 kb on + strand, within mrcA at 2650.758 kb on + strand, within mrcA at 2650.766 kb on - strand, within mrcA at 2650.769 kb on + strand, within mrcA at 2650.769 kb on + strand, within mrcA at 2650.769 kb on + strand, within mrcA at 2650.769 kb on + strand, within mrcA at 2650.777 kb on - strand, within mrcA at 2650.777 kb on - strand, within mrcA at 2650.777 kb on - strand, within mrcA at 2650.777 kb on - strand, within mrcA at 2650.788 kb on + strand, within mrcA at 2650.788 kb on + strand, within mrcA at 2650.801 kb on - strand, within mrcA at 2650.801 kb on - strand, within mrcA at 2650.801 kb on - strand, within mrcA at 2650.819 kb on - strand, within mrcA at 2650.834 kb on + strand, within mrcA at 2650.837 kb on - strand, within mrcA at 2650.856 kb on - strand, within mrcA at 2650.868 kb on + strand, within mrcA at 2650.891 kb on - strand, within mrcA at 2650.902 kb on + strand, within mrcA at 2650.910 kb on - strand, within mrcA at 2650.925 kb on + strand, within mrcA at 2650.925 kb on + strand, within mrcA at 2650.933 kb on - strand, within mrcA at 2650.945 kb on + strand, within mrcA at 2650.945 kb on + strand, within mrcA at 2650.953 kb on - strand, within mrcA at 2650.984 kb on - strand, within mrcA at 2650.986 kb on - strand, within mrcA at 2651.004 kb on + strand, within mrcA at 2651.004 kb on + strand, within mrcA at 2651.005 kb on - strand, within mrcA at 2651.012 kb on - strand, within mrcA at 2651.082 kb on + strand, within mrcA at 2651.102 kb on - strand, within mrcA at 2651.112 kb on - strand, within mrcA at 2651.114 kb on - strand, within mrcA at 2651.149 kb on + strand, within mrcA at 2651.157 kb on + strand, within mrcA at 2651.170 kb on - strand, within mrcA at 2651.176 kb on + strand, within mrcA at 2651.177 kb on + strand, within mrcA at 2651.177 kb on - strand, within mrcA at 2651.195 kb on + strand, within mrcA at 2651.197 kb on + strand at 2651.197 kb on + strand, within mrcA at 2651.199 kb on + strand, within mrcA at 2651.199 kb on + strand, within mrcA at 2651.199 kb on + strand, within mrcA at 2651.202 kb on - strand, within mrcA at 2651.205 kb on - strand, within mrcA at 2651.207 kb on - strand, within mrcA at 2651.207 kb on - strand, within mrcA at 2651.207 kb on - strand, within mrcA at 2651.207 kb on - strand, within mrcA at 2651.214 kb on - strand, within mrcA at 2651.229 kb on + strand, within mrcA at 2651.242 kb on - strand, within mrcA at 2651.242 kb on - strand, within mrcA at 2651.256 kb on + strand, within mrcA at 2651.256 kb on + strand, within mrcA at 2651.264 kb on - strand, within mrcA at 2651.266 kb on + strand, within mrcA at 2651.266 kb on + strand, within mrcA at 2651.266 kb on + strand, within mrcA at 2651.274 kb on - strand, within mrcA at 2651.286 kb on - strand, within mrcA at 2651.306 kb on + strand, within mrcA at 2651.312 kb on + strand, within mrcA at 2651.315 kb on + strand, within mrcA at 2651.355 kb on + strand, within mrcA at 2651.358 kb on - strand, within mrcA at 2651.358 kb on - strand, within mrcA at 2651.377 kb on + strand, within mrcA at 2651.381 kb on + strand, within mrcA at 2651.389 kb on - strand, within mrcA at 2651.396 kb on + strand, within mrcA at 2651.407 kb on - strand, within mrcA at 2651.412 kb on - strand, within mrcA at 2651.428 kb on - strand, within mrcA at 2651.450 kb on + strand, within mrcA at 2651.490 kb on + strand, within mrcA at 2651.503 kb on - strand, within mrcA at 2651.570 kb on - strand, within mrcA at 2651.577 kb on + strand, within mrcA at 2651.599 kb on + strand, within mrcA at 2651.612 kb on + strand, within mrcA at 2651.612 kb on + strand, within mrcA at 2651.614 kb on - strand, within mrcA at 2651.614 kb on - strand, within mrcA at 2651.627 kb on + strand, within mrcA at 2651.629 kb on + strand, within mrcA at 2651.678 kb on - strand, within mrcA at 2651.682 kb on + strand, within mrcA at 2651.682 kb on + strand, within mrcA at 2651.682 kb on - strand, within mrcA at 2651.696 kb on - strand, within mrcA at 2651.702 kb on - strand, within mrcA at 2651.739 kb on + strand, within mrcA at 2651.747 kb on - strand, within mrcA at 2651.747 kb on - strand, within mrcA at 2651.762 kb on - strand, within mrcA at 2651.810 kb on + strand at 2651.825 kb on + strand at 2651.825 kb on - strand at 2651.853 kb on - strand at 2651.950 kb on - strand at 2651.995 kb on - strand at 2652.114 kb on + strand, within Synpcc7942_2572 at 2652.361 kb on - strand at 2652.387 kb on - strand at 2652.387 kb on - strand at 2652.551 kb on + strand at 2652.712 kb on + strand, within mntB at 2652.807 kb on + strand, within mntB at 2652.814 kb on - strand, within mntB at 2652.814 kb on - strand, within mntB at 2652.873 kb on - strand, within mntB at 2652.913 kb on + strand, within mntB
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 20 mM remove 2,650,042 + -2.1 2,650,052 - -1.3 2,650,069 + -1.9 2,650,098 + -2.3 2,650,107 - +1.0 2,650,109 + -0.9 2,650,118 - +0.8 2,650,123 + -0.9 2,650,123 + +0.4 2,650,131 - +0.3 2,650,131 - -2.9 2,650,131 - -1.8 2,650,131 - -0.3 2,650,168 + +3.2 2,650,176 - -0.2 2,650,196 + -1.3 2,650,201 + +0.7 2,650,201 + -0.3 2,650,201 + +1.5 2,650,201 + -1.3 2,650,201 + -0.5 2,650,201 + +0.3 2,650,201 + -2.6 2,650,204 - -1.3 2,650,209 - +0.5 2,650,209 - -1.0 2,650,209 - -0.7 2,650,209 - +0.7 2,650,209 - +0.5 2,650,210 - +1.2 2,650,213 + -0.8 2,650,213 + -0.8 2,650,228 - +0.7 2,650,238 + -0.8 2,650,246 - -1.7 2,650,246 - +0.1 2,650,246 - -0.6 2,650,249 + +0.3 2,650,275 - -2.9 2,650,276 + -0.2 2,650,284 - +1.7 2,650,307 + mrcA Synpcc7942_2571 0.11 +0.5 2,650,308 - mrcA Synpcc7942_2571 0.11 +1.5 2,650,320 + mrcA Synpcc7942_2571 0.12 +1.4 2,650,338 - mrcA Synpcc7942_2571 0.13 +0.1 2,650,389 - mrcA Synpcc7942_2571 0.15 -0.1 2,650,429 - mrcA Synpcc7942_2571 0.17 -0.3 2,650,429 - mrcA Synpcc7942_2571 0.17 +1.5 2,650,429 - mrcA Synpcc7942_2571 0.17 +0.4 2,650,474 - mrcA Synpcc7942_2571 0.20 -1.3 2,650,480 + mrcA Synpcc7942_2571 0.20 +1.0 2,650,480 + mrcA Synpcc7942_2571 0.20 -0.0 2,650,495 + mrcA Synpcc7942_2571 0.21 -1.3 2,650,501 + mrcA Synpcc7942_2571 0.21 -1.9 2,650,564 - mrcA Synpcc7942_2571 0.25 -0.6 2,650,569 + mrcA Synpcc7942_2571 0.25 -1.3 2,650,635 + mrcA Synpcc7942_2571 0.28 +0.6 2,650,637 - mrcA Synpcc7942_2571 0.28 -0.1 2,650,653 + mrcA Synpcc7942_2571 0.29 +0.4 2,650,653 + mrcA Synpcc7942_2571 0.29 -2.0 2,650,661 - mrcA Synpcc7942_2571 0.30 +0.1 2,650,715 + mrcA Synpcc7942_2571 0.33 -0.3 2,650,722 + mrcA Synpcc7942_2571 0.33 -0.3 2,650,723 - mrcA Synpcc7942_2571 0.33 -2.9 2,650,736 - mrcA Synpcc7942_2571 0.34 -3.9 2,650,758 + mrcA Synpcc7942_2571 0.35 -1.3 2,650,758 + mrcA Synpcc7942_2571 0.35 -1.6 2,650,758 + mrcA Synpcc7942_2571 0.35 -2.3 2,650,766 - mrcA Synpcc7942_2571 0.35 -2.3 2,650,769 + mrcA Synpcc7942_2571 0.36 +0.5 2,650,769 + mrcA Synpcc7942_2571 0.36 +0.7 2,650,769 + mrcA Synpcc7942_2571 0.36 +0.3 2,650,769 + mrcA Synpcc7942_2571 0.36 +0.9 2,650,777 - mrcA Synpcc7942_2571 0.36 -0.2 2,650,777 - mrcA Synpcc7942_2571 0.36 +0.7 2,650,777 - mrcA Synpcc7942_2571 0.36 -0.6 2,650,777 - mrcA Synpcc7942_2571 0.36 -0.6 2,650,788 + mrcA Synpcc7942_2571 0.37 -1.3 2,650,788 + mrcA Synpcc7942_2571 0.37 -1.3 2,650,801 - mrcA Synpcc7942_2571 0.37 -3.3 2,650,801 - mrcA Synpcc7942_2571 0.37 +0.1 2,650,801 - mrcA Synpcc7942_2571 0.37 -3.3 2,650,819 - mrcA Synpcc7942_2571 0.38 -1.3 2,650,834 + mrcA Synpcc7942_2571 0.39 -0.1 2,650,837 - mrcA Synpcc7942_2571 0.39 -1.3 2,650,856 - mrcA Synpcc7942_2571 0.40 -1.1 2,650,868 + mrcA Synpcc7942_2571 0.41 -1.3 2,650,891 - mrcA Synpcc7942_2571 0.42 -1.3 2,650,902 + mrcA Synpcc7942_2571 0.43 +1.5 2,650,910 - mrcA Synpcc7942_2571 0.43 +3.0 2,650,925 + mrcA Synpcc7942_2571 0.44 +0.0 2,650,925 + mrcA Synpcc7942_2571 0.44 -0.6 2,650,933 - mrcA Synpcc7942_2571 0.44 -2.3 2,650,945 + mrcA Synpcc7942_2571 0.45 +0.4 2,650,945 + mrcA Synpcc7942_2571 0.45 +2.8 2,650,953 - mrcA Synpcc7942_2571 0.45 +1.0 2,650,984 - mrcA Synpcc7942_2571 0.47 -1.3 2,650,986 - mrcA Synpcc7942_2571 0.47 -2.3 2,651,004 + mrcA Synpcc7942_2571 0.48 +1.9 2,651,004 + mrcA Synpcc7942_2571 0.48 +0.8 2,651,005 - mrcA Synpcc7942_2571 0.48 -3.3 2,651,012 - mrcA Synpcc7942_2571 0.48 +0.3 2,651,082 + mrcA Synpcc7942_2571 0.52 +0.7 2,651,102 - mrcA Synpcc7942_2571 0.53 -0.3 2,651,112 - mrcA Synpcc7942_2571 0.54 -0.6 2,651,114 - mrcA Synpcc7942_2571 0.54 -1.3 2,651,149 + mrcA Synpcc7942_2571 0.56 -1.3 2,651,157 + mrcA Synpcc7942_2571 0.56 +1.5 2,651,170 - mrcA Synpcc7942_2571 0.57 -0.7 2,651,176 + mrcA Synpcc7942_2571 0.57 +0.1 2,651,177 + mrcA Synpcc7942_2571 0.57 -1.3 2,651,177 - mrcA Synpcc7942_2571 0.57 +1.4 2,651,195 + mrcA Synpcc7942_2571 0.58 -1.3 2,651,197 + -0.3 2,651,197 + mrcA Synpcc7942_2571 0.58 -2.3 2,651,199 + mrcA Synpcc7942_2571 0.58 -1.0 2,651,199 + mrcA Synpcc7942_2571 0.58 -1.3 2,651,199 + mrcA Synpcc7942_2571 0.58 +1.6 2,651,202 - mrcA Synpcc7942_2571 0.59 +0.7 2,651,205 - mrcA Synpcc7942_2571 0.59 -0.3 2,651,207 - mrcA Synpcc7942_2571 0.59 -0.4 2,651,207 - mrcA Synpcc7942_2571 0.59 -4.3 2,651,207 - mrcA Synpcc7942_2571 0.59 +1.0 2,651,207 - mrcA Synpcc7942_2571 0.59 -1.3 2,651,214 - mrcA Synpcc7942_2571 0.59 +1.9 2,651,229 + mrcA Synpcc7942_2571 0.60 +0.1 2,651,242 - mrcA Synpcc7942_2571 0.61 -1.0 2,651,242 - mrcA Synpcc7942_2571 0.61 +1.2 2,651,256 + mrcA Synpcc7942_2571 0.61 -1.3 2,651,256 + mrcA Synpcc7942_2571 0.61 -0.3 2,651,264 - mrcA Synpcc7942_2571 0.62 -1.3 2,651,266 + mrcA Synpcc7942_2571 0.62 +1.2 2,651,266 + mrcA Synpcc7942_2571 0.62 +0.8 2,651,266 + mrcA Synpcc7942_2571 0.62 -0.7 2,651,274 - mrcA Synpcc7942_2571 0.62 -0.6 2,651,286 - mrcA Synpcc7942_2571 0.63 +0.3 2,651,306 + mrcA Synpcc7942_2571 0.64 -0.7 2,651,312 + mrcA Synpcc7942_2571 0.64 -2.3 2,651,315 + mrcA Synpcc7942_2571 0.65 -0.4 2,651,355 + mrcA Synpcc7942_2571 0.67 +1.0 2,651,358 - mrcA Synpcc7942_2571 0.67 +1.0 2,651,358 - mrcA Synpcc7942_2571 0.67 -0.4 2,651,377 + mrcA Synpcc7942_2571 0.68 +0.8 2,651,381 + mrcA Synpcc7942_2571 0.68 -0.7 2,651,389 - mrcA Synpcc7942_2571 0.69 -0.5 2,651,396 + mrcA Synpcc7942_2571 0.69 -2.3 2,651,407 - mrcA Synpcc7942_2571 0.69 -0.3 2,651,412 - mrcA Synpcc7942_2571 0.70 -0.3 2,651,428 - mrcA Synpcc7942_2571 0.71 +0.3 2,651,450 + mrcA Synpcc7942_2571 0.72 -0.0 2,651,490 + mrcA Synpcc7942_2571 0.74 -0.1 2,651,503 - mrcA Synpcc7942_2571 0.75 +2.9 2,651,570 - mrcA Synpcc7942_2571 0.78 +1.0 2,651,577 + mrcA Synpcc7942_2571 0.79 +0.2 2,651,599 + mrcA Synpcc7942_2571 0.80 +1.6 2,651,612 + mrcA Synpcc7942_2571 0.80 -1.3 2,651,612 + mrcA Synpcc7942_2571 0.80 +1.2 2,651,614 - mrcA Synpcc7942_2571 0.81 +1.3 2,651,614 - mrcA Synpcc7942_2571 0.81 +0.0 2,651,627 + mrcA Synpcc7942_2571 0.81 +0.0 2,651,629 + mrcA Synpcc7942_2571 0.81 -1.0 2,651,678 - mrcA Synpcc7942_2571 0.84 +1.4 2,651,682 + mrcA Synpcc7942_2571 0.84 +1.0 2,651,682 + mrcA Synpcc7942_2571 0.84 +2.0 2,651,682 - mrcA Synpcc7942_2571 0.84 -1.3 2,651,696 - mrcA Synpcc7942_2571 0.85 -2.3 2,651,702 - mrcA Synpcc7942_2571 0.85 -1.3 2,651,739 + mrcA Synpcc7942_2571 0.87 +1.3 2,651,747 - mrcA Synpcc7942_2571 0.88 -2.3 2,651,747 - mrcA Synpcc7942_2571 0.88 -2.9 2,651,762 - mrcA Synpcc7942_2571 0.88 -0.3 2,651,810 + -1.3 2,651,825 + -0.3 2,651,825 - -1.3 2,651,853 - -1.3 2,651,950 - +0.7 2,651,995 - -1.3 2,652,114 + Synpcc7942_2572 0.17 +1.1 2,652,361 - +1.0 2,652,387 - +1.5 2,652,387 - +1.3 2,652,551 + +0.3 2,652,712 + mntB Synpcc7942_2573 0.24 +0.6 2,652,807 + mntB Synpcc7942_2573 0.35 -0.6 2,652,814 - mntB Synpcc7942_2573 0.36 +1.1 2,652,814 - mntB Synpcc7942_2573 0.36 +0.1 2,652,873 - mntB Synpcc7942_2573 0.43 -1.5 2,652,913 + mntB Synpcc7942_2573 0.48 +2.2
Or see this region's nucleotide sequence