Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2571

Experiment: Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttyrS and mrcA are separated by 69 nucleotidesmrcA and Synpcc7942_2572 are separated by 80 nucleotidesSynpcc7942_2572 and mntB are separated by 138 nucleotides Synpcc7942_2570: tyrS - tyrosyl-tRNA synthetase, at 2,648,824 to 2,650,032 tyrS Synpcc7942_2571: mrcA - Penicillin-binding protein 1A, at 2,650,102 to 2,651,979 mrcA Synpcc7942_2572: Synpcc7942_2572 - hypothetical protein, at 2,652,060 to 2,652,377 _2572 Synpcc7942_2573: mntB - manganese transport system membrane protein MntB, at 2,652,516 to 2,653,346 mntB Position (kb) 2650 2651 2652Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2650.042 kb on + strandat 2650.052 kb on - strandat 2650.069 kb on + strandat 2650.098 kb on + strandat 2650.107 kb on - strandat 2650.109 kb on + strandat 2650.118 kb on - strandat 2650.123 kb on + strandat 2650.123 kb on + strandat 2650.131 kb on - strandat 2650.131 kb on - strandat 2650.131 kb on - strandat 2650.131 kb on - strandat 2650.168 kb on + strandat 2650.176 kb on - strandat 2650.196 kb on + strandat 2650.201 kb on + strandat 2650.201 kb on + strandat 2650.201 kb on + strandat 2650.201 kb on + strandat 2650.201 kb on + strandat 2650.201 kb on + strandat 2650.201 kb on + strandat 2650.204 kb on - strandat 2650.209 kb on - strandat 2650.209 kb on - strandat 2650.209 kb on - strandat 2650.209 kb on - strandat 2650.209 kb on - strandat 2650.210 kb on - strandat 2650.213 kb on + strandat 2650.213 kb on + strandat 2650.228 kb on - strandat 2650.238 kb on + strandat 2650.246 kb on - strandat 2650.246 kb on - strandat 2650.246 kb on - strandat 2650.249 kb on + strandat 2650.275 kb on - strandat 2650.276 kb on + strandat 2650.284 kb on - strandat 2650.307 kb on + strand, within mrcAat 2650.308 kb on - strand, within mrcAat 2650.320 kb on + strand, within mrcAat 2650.338 kb on - strand, within mrcAat 2650.389 kb on - strand, within mrcAat 2650.429 kb on - strand, within mrcAat 2650.429 kb on - strand, within mrcAat 2650.429 kb on - strand, within mrcAat 2650.474 kb on - strand, within mrcAat 2650.480 kb on + strand, within mrcAat 2650.480 kb on + strand, within mrcAat 2650.495 kb on + strand, within mrcAat 2650.501 kb on + strand, within mrcAat 2650.564 kb on - strand, within mrcAat 2650.569 kb on + strand, within mrcAat 2650.635 kb on + strand, within mrcAat 2650.637 kb on - strand, within mrcAat 2650.653 kb on + strand, within mrcAat 2650.653 kb on + strand, within mrcAat 2650.661 kb on - strand, within mrcAat 2650.715 kb on + strand, within mrcAat 2650.722 kb on + strand, within mrcAat 2650.723 kb on - strand, within mrcAat 2650.736 kb on - strand, within mrcAat 2650.758 kb on + strand, within mrcAat 2650.758 kb on + strand, within mrcAat 2650.758 kb on + strand, within mrcAat 2650.766 kb on - strand, within mrcAat 2650.769 kb on + strand, within mrcAat 2650.769 kb on + strand, within mrcAat 2650.769 kb on + strand, within mrcAat 2650.769 kb on + strand, within mrcAat 2650.777 kb on - strand, within mrcAat 2650.777 kb on - strand, within mrcAat 2650.777 kb on - strand, within mrcAat 2650.777 kb on - strand, within mrcAat 2650.788 kb on + strand, within mrcAat 2650.788 kb on + strand, within mrcAat 2650.801 kb on - strand, within mrcAat 2650.801 kb on - strand, within mrcAat 2650.801 kb on - strand, within mrcAat 2650.819 kb on - strand, within mrcAat 2650.834 kb on + strand, within mrcAat 2650.837 kb on - strand, within mrcAat 2650.856 kb on - strand, within mrcAat 2650.868 kb on + strand, within mrcAat 2650.891 kb on - strand, within mrcAat 2650.902 kb on + strand, within mrcAat 2650.910 kb on - strand, within mrcAat 2650.925 kb on + strand, within mrcAat 2650.925 kb on + strand, within mrcAat 2650.933 kb on - strand, within mrcAat 2650.945 kb on + strand, within mrcAat 2650.945 kb on + strand, within mrcAat 2650.953 kb on - strand, within mrcAat 2650.984 kb on - strand, within mrcAat 2650.986 kb on - strand, within mrcAat 2651.004 kb on + strand, within mrcAat 2651.004 kb on + strand, within mrcAat 2651.005 kb on - strand, within mrcAat 2651.012 kb on - strand, within mrcAat 2651.082 kb on + strand, within mrcAat 2651.102 kb on - strand, within mrcAat 2651.112 kb on - strand, within mrcAat 2651.114 kb on - strand, within mrcAat 2651.149 kb on + strand, within mrcAat 2651.157 kb on + strand, within mrcAat 2651.170 kb on - strand, within mrcAat 2651.176 kb on + strand, within mrcAat 2651.177 kb on + strand, within mrcAat 2651.177 kb on - strand, within mrcAat 2651.195 kb on + strand, within mrcAat 2651.197 kb on + strandat 2651.197 kb on + strand, within mrcAat 2651.199 kb on + strand, within mrcAat 2651.199 kb on + strand, within mrcAat 2651.199 kb on + strand, within mrcAat 2651.202 kb on - strand, within mrcAat 2651.205 kb on - strand, within mrcAat 2651.207 kb on - strand, within mrcAat 2651.207 kb on - strand, within mrcAat 2651.207 kb on - strand, within mrcAat 2651.207 kb on - strand, within mrcAat 2651.214 kb on - strand, within mrcAat 2651.229 kb on + strand, within mrcAat 2651.242 kb on - strand, within mrcAat 2651.242 kb on - strand, within mrcAat 2651.256 kb on + strand, within mrcAat 2651.256 kb on + strand, within mrcAat 2651.264 kb on - strand, within mrcAat 2651.266 kb on + strand, within mrcAat 2651.266 kb on + strand, within mrcAat 2651.266 kb on + strand, within mrcAat 2651.274 kb on - strand, within mrcAat 2651.286 kb on - strand, within mrcAat 2651.306 kb on + strand, within mrcAat 2651.312 kb on + strand, within mrcAat 2651.315 kb on + strand, within mrcAat 2651.355 kb on + strand, within mrcAat 2651.358 kb on - strand, within mrcAat 2651.358 kb on - strand, within mrcAat 2651.377 kb on + strand, within mrcAat 2651.381 kb on + strand, within mrcAat 2651.389 kb on - strand, within mrcAat 2651.396 kb on + strand, within mrcAat 2651.407 kb on - strand, within mrcAat 2651.412 kb on - strand, within mrcAat 2651.428 kb on - strand, within mrcAat 2651.450 kb on + strand, within mrcAat 2651.490 kb on + strand, within mrcAat 2651.503 kb on - strand, within mrcAat 2651.570 kb on - strand, within mrcAat 2651.577 kb on + strand, within mrcAat 2651.599 kb on + strand, within mrcAat 2651.612 kb on + strand, within mrcAat 2651.612 kb on + strand, within mrcAat 2651.614 kb on - strand, within mrcAat 2651.614 kb on - strand, within mrcAat 2651.627 kb on + strand, within mrcAat 2651.629 kb on + strand, within mrcAat 2651.678 kb on - strand, within mrcAat 2651.682 kb on + strand, within mrcAat 2651.682 kb on + strand, within mrcAat 2651.682 kb on - strand, within mrcAat 2651.696 kb on - strand, within mrcAat 2651.702 kb on - strand, within mrcAat 2651.739 kb on + strand, within mrcAat 2651.747 kb on - strand, within mrcAat 2651.747 kb on - strand, within mrcAat 2651.762 kb on - strand, within mrcAat 2651.810 kb on + strandat 2651.825 kb on + strandat 2651.825 kb on - strandat 2651.853 kb on - strandat 2651.950 kb on - strandat 2651.995 kb on - strandat 2652.114 kb on + strand, within Synpcc7942_2572at 2652.361 kb on - strandat 2652.387 kb on - strandat 2652.387 kb on - strandat 2652.551 kb on + strandat 2652.712 kb on + strand, within mntBat 2652.807 kb on + strand, within mntBat 2652.814 kb on - strand, within mntBat 2652.814 kb on - strand, within mntBat 2652.873 kb on - strand, within mntBat 2652.913 kb on + strand, within mntB

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 20 mM
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2,650,042 + -2.1
2,650,052 - -1.3
2,650,069 + -1.9
2,650,098 + -2.3
2,650,107 - +1.0
2,650,109 + -0.9
2,650,118 - +0.8
2,650,123 + -0.9
2,650,123 + +0.4
2,650,131 - +0.3
2,650,131 - -2.9
2,650,131 - -1.8
2,650,131 - -0.3
2,650,168 + +3.2
2,650,176 - -0.2
2,650,196 + -1.3
2,650,201 + +0.7
2,650,201 + -0.3
2,650,201 + +1.5
2,650,201 + -1.3
2,650,201 + -0.5
2,650,201 + +0.3
2,650,201 + -2.6
2,650,204 - -1.3
2,650,209 - +0.5
2,650,209 - -1.0
2,650,209 - -0.7
2,650,209 - +0.7
2,650,209 - +0.5
2,650,210 - +1.2
2,650,213 + -0.8
2,650,213 + -0.8
2,650,228 - +0.7
2,650,238 + -0.8
2,650,246 - -1.7
2,650,246 - +0.1
2,650,246 - -0.6
2,650,249 + +0.3
2,650,275 - -2.9
2,650,276 + -0.2
2,650,284 - +1.7
2,650,307 + mrcA Synpcc7942_2571 0.11 +0.5
2,650,308 - mrcA Synpcc7942_2571 0.11 +1.5
2,650,320 + mrcA Synpcc7942_2571 0.12 +1.4
2,650,338 - mrcA Synpcc7942_2571 0.13 +0.1
2,650,389 - mrcA Synpcc7942_2571 0.15 -0.1
2,650,429 - mrcA Synpcc7942_2571 0.17 -0.3
2,650,429 - mrcA Synpcc7942_2571 0.17 +1.5
2,650,429 - mrcA Synpcc7942_2571 0.17 +0.4
2,650,474 - mrcA Synpcc7942_2571 0.20 -1.3
2,650,480 + mrcA Synpcc7942_2571 0.20 +1.0
2,650,480 + mrcA Synpcc7942_2571 0.20 -0.0
2,650,495 + mrcA Synpcc7942_2571 0.21 -1.3
2,650,501 + mrcA Synpcc7942_2571 0.21 -1.9
2,650,564 - mrcA Synpcc7942_2571 0.25 -0.6
2,650,569 + mrcA Synpcc7942_2571 0.25 -1.3
2,650,635 + mrcA Synpcc7942_2571 0.28 +0.6
2,650,637 - mrcA Synpcc7942_2571 0.28 -0.1
2,650,653 + mrcA Synpcc7942_2571 0.29 +0.4
2,650,653 + mrcA Synpcc7942_2571 0.29 -2.0
2,650,661 - mrcA Synpcc7942_2571 0.30 +0.1
2,650,715 + mrcA Synpcc7942_2571 0.33 -0.3
2,650,722 + mrcA Synpcc7942_2571 0.33 -0.3
2,650,723 - mrcA Synpcc7942_2571 0.33 -2.9
2,650,736 - mrcA Synpcc7942_2571 0.34 -3.9
2,650,758 + mrcA Synpcc7942_2571 0.35 -1.3
2,650,758 + mrcA Synpcc7942_2571 0.35 -1.6
2,650,758 + mrcA Synpcc7942_2571 0.35 -2.3
2,650,766 - mrcA Synpcc7942_2571 0.35 -2.3
2,650,769 + mrcA Synpcc7942_2571 0.36 +0.5
2,650,769 + mrcA Synpcc7942_2571 0.36 +0.7
2,650,769 + mrcA Synpcc7942_2571 0.36 +0.3
2,650,769 + mrcA Synpcc7942_2571 0.36 +0.9
2,650,777 - mrcA Synpcc7942_2571 0.36 -0.2
2,650,777 - mrcA Synpcc7942_2571 0.36 +0.7
2,650,777 - mrcA Synpcc7942_2571 0.36 -0.6
2,650,777 - mrcA Synpcc7942_2571 0.36 -0.6
2,650,788 + mrcA Synpcc7942_2571 0.37 -1.3
2,650,788 + mrcA Synpcc7942_2571 0.37 -1.3
2,650,801 - mrcA Synpcc7942_2571 0.37 -3.3
2,650,801 - mrcA Synpcc7942_2571 0.37 +0.1
2,650,801 - mrcA Synpcc7942_2571 0.37 -3.3
2,650,819 - mrcA Synpcc7942_2571 0.38 -1.3
2,650,834 + mrcA Synpcc7942_2571 0.39 -0.1
2,650,837 - mrcA Synpcc7942_2571 0.39 -1.3
2,650,856 - mrcA Synpcc7942_2571 0.40 -1.1
2,650,868 + mrcA Synpcc7942_2571 0.41 -1.3
2,650,891 - mrcA Synpcc7942_2571 0.42 -1.3
2,650,902 + mrcA Synpcc7942_2571 0.43 +1.5
2,650,910 - mrcA Synpcc7942_2571 0.43 +3.0
2,650,925 + mrcA Synpcc7942_2571 0.44 +0.0
2,650,925 + mrcA Synpcc7942_2571 0.44 -0.6
2,650,933 - mrcA Synpcc7942_2571 0.44 -2.3
2,650,945 + mrcA Synpcc7942_2571 0.45 +0.4
2,650,945 + mrcA Synpcc7942_2571 0.45 +2.8
2,650,953 - mrcA Synpcc7942_2571 0.45 +1.0
2,650,984 - mrcA Synpcc7942_2571 0.47 -1.3
2,650,986 - mrcA Synpcc7942_2571 0.47 -2.3
2,651,004 + mrcA Synpcc7942_2571 0.48 +1.9
2,651,004 + mrcA Synpcc7942_2571 0.48 +0.8
2,651,005 - mrcA Synpcc7942_2571 0.48 -3.3
2,651,012 - mrcA Synpcc7942_2571 0.48 +0.3
2,651,082 + mrcA Synpcc7942_2571 0.52 +0.7
2,651,102 - mrcA Synpcc7942_2571 0.53 -0.3
2,651,112 - mrcA Synpcc7942_2571 0.54 -0.6
2,651,114 - mrcA Synpcc7942_2571 0.54 -1.3
2,651,149 + mrcA Synpcc7942_2571 0.56 -1.3
2,651,157 + mrcA Synpcc7942_2571 0.56 +1.5
2,651,170 - mrcA Synpcc7942_2571 0.57 -0.7
2,651,176 + mrcA Synpcc7942_2571 0.57 +0.1
2,651,177 + mrcA Synpcc7942_2571 0.57 -1.3
2,651,177 - mrcA Synpcc7942_2571 0.57 +1.4
2,651,195 + mrcA Synpcc7942_2571 0.58 -1.3
2,651,197 + -0.3
2,651,197 + mrcA Synpcc7942_2571 0.58 -2.3
2,651,199 + mrcA Synpcc7942_2571 0.58 -1.0
2,651,199 + mrcA Synpcc7942_2571 0.58 -1.3
2,651,199 + mrcA Synpcc7942_2571 0.58 +1.6
2,651,202 - mrcA Synpcc7942_2571 0.59 +0.7
2,651,205 - mrcA Synpcc7942_2571 0.59 -0.3
2,651,207 - mrcA Synpcc7942_2571 0.59 -0.4
2,651,207 - mrcA Synpcc7942_2571 0.59 -4.3
2,651,207 - mrcA Synpcc7942_2571 0.59 +1.0
2,651,207 - mrcA Synpcc7942_2571 0.59 -1.3
2,651,214 - mrcA Synpcc7942_2571 0.59 +1.9
2,651,229 + mrcA Synpcc7942_2571 0.60 +0.1
2,651,242 - mrcA Synpcc7942_2571 0.61 -1.0
2,651,242 - mrcA Synpcc7942_2571 0.61 +1.2
2,651,256 + mrcA Synpcc7942_2571 0.61 -1.3
2,651,256 + mrcA Synpcc7942_2571 0.61 -0.3
2,651,264 - mrcA Synpcc7942_2571 0.62 -1.3
2,651,266 + mrcA Synpcc7942_2571 0.62 +1.2
2,651,266 + mrcA Synpcc7942_2571 0.62 +0.8
2,651,266 + mrcA Synpcc7942_2571 0.62 -0.7
2,651,274 - mrcA Synpcc7942_2571 0.62 -0.6
2,651,286 - mrcA Synpcc7942_2571 0.63 +0.3
2,651,306 + mrcA Synpcc7942_2571 0.64 -0.7
2,651,312 + mrcA Synpcc7942_2571 0.64 -2.3
2,651,315 + mrcA Synpcc7942_2571 0.65 -0.4
2,651,355 + mrcA Synpcc7942_2571 0.67 +1.0
2,651,358 - mrcA Synpcc7942_2571 0.67 +1.0
2,651,358 - mrcA Synpcc7942_2571 0.67 -0.4
2,651,377 + mrcA Synpcc7942_2571 0.68 +0.8
2,651,381 + mrcA Synpcc7942_2571 0.68 -0.7
2,651,389 - mrcA Synpcc7942_2571 0.69 -0.5
2,651,396 + mrcA Synpcc7942_2571 0.69 -2.3
2,651,407 - mrcA Synpcc7942_2571 0.69 -0.3
2,651,412 - mrcA Synpcc7942_2571 0.70 -0.3
2,651,428 - mrcA Synpcc7942_2571 0.71 +0.3
2,651,450 + mrcA Synpcc7942_2571 0.72 -0.0
2,651,490 + mrcA Synpcc7942_2571 0.74 -0.1
2,651,503 - mrcA Synpcc7942_2571 0.75 +2.9
2,651,570 - mrcA Synpcc7942_2571 0.78 +1.0
2,651,577 + mrcA Synpcc7942_2571 0.79 +0.2
2,651,599 + mrcA Synpcc7942_2571 0.80 +1.6
2,651,612 + mrcA Synpcc7942_2571 0.80 -1.3
2,651,612 + mrcA Synpcc7942_2571 0.80 +1.2
2,651,614 - mrcA Synpcc7942_2571 0.81 +1.3
2,651,614 - mrcA Synpcc7942_2571 0.81 +0.0
2,651,627 + mrcA Synpcc7942_2571 0.81 +0.0
2,651,629 + mrcA Synpcc7942_2571 0.81 -1.0
2,651,678 - mrcA Synpcc7942_2571 0.84 +1.4
2,651,682 + mrcA Synpcc7942_2571 0.84 +1.0
2,651,682 + mrcA Synpcc7942_2571 0.84 +2.0
2,651,682 - mrcA Synpcc7942_2571 0.84 -1.3
2,651,696 - mrcA Synpcc7942_2571 0.85 -2.3
2,651,702 - mrcA Synpcc7942_2571 0.85 -1.3
2,651,739 + mrcA Synpcc7942_2571 0.87 +1.3
2,651,747 - mrcA Synpcc7942_2571 0.88 -2.3
2,651,747 - mrcA Synpcc7942_2571 0.88 -2.9
2,651,762 - mrcA Synpcc7942_2571 0.88 -0.3
2,651,810 + -1.3
2,651,825 + -0.3
2,651,825 - -1.3
2,651,853 - -1.3
2,651,950 - +0.7
2,651,995 - -1.3
2,652,114 + Synpcc7942_2572 0.17 +1.1
2,652,361 - +1.0
2,652,387 - +1.5
2,652,387 - +1.3
2,652,551 + +0.3
2,652,712 + mntB Synpcc7942_2573 0.24 +0.6
2,652,807 + mntB Synpcc7942_2573 0.35 -0.6
2,652,814 - mntB Synpcc7942_2573 0.36 +1.1
2,652,814 - mntB Synpcc7942_2573 0.36 +0.1
2,652,873 - mntB Synpcc7942_2573 0.43 -1.5
2,652,913 + mntB Synpcc7942_2573 0.48 +2.2

Or see this region's nucleotide sequence