Experiment: Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0871 and Synpcc7942_0872 are separated by 31 nucleotides Synpcc7942_0872 and Synpcc7942_0873 are separated by 167 nucleotides Synpcc7942_0873 and Synpcc7942_0874 are separated by 193 nucleotides
Synpcc7942_0870: Synpcc7942_0870 - hypothetical protein, at 871,886 to 872,113
_0870
Synpcc7942_0871: Synpcc7942_0871 - hypothetical protein, at 872,106 to 872,330
_0871
Synpcc7942_0872: Synpcc7942_0872 - hypothetical protein, at 872,362 to 872,940
_0872
Synpcc7942_0873: Synpcc7942_0873 - hypothetical protein, at 873,108 to 874,196
_0873
Synpcc7942_0874: Synpcc7942_0874 - DEAD/DEAH box helicase-like, at 874,390 to 877,449
_0874
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 872.352 kb on - strand at 872.410 kb on - strand at 872.423 kb on + strand, within Synpcc7942_0872 at 872.424 kb on - strand, within Synpcc7942_0872 at 872.474 kb on - strand, within Synpcc7942_0872 at 872.537 kb on + strand, within Synpcc7942_0872 at 872.576 kb on + strand, within Synpcc7942_0872 at 872.576 kb on + strand, within Synpcc7942_0872 at 872.576 kb on + strand, within Synpcc7942_0872 at 872.576 kb on + strand, within Synpcc7942_0872 at 872.584 kb on - strand, within Synpcc7942_0872 at 872.584 kb on - strand, within Synpcc7942_0872 at 872.688 kb on + strand, within Synpcc7942_0872 at 872.688 kb on + strand, within Synpcc7942_0872 at 872.696 kb on - strand, within Synpcc7942_0872 at 872.763 kb on + strand, within Synpcc7942_0872 at 872.788 kb on + strand, within Synpcc7942_0872 at 872.807 kb on + strand, within Synpcc7942_0872 at 872.921 kb on - strand at 872.934 kb on - strand at 873.041 kb on - strand at 873.186 kb on + strand at 873.225 kb on + strand, within Synpcc7942_0873 at 873.227 kb on + strand, within Synpcc7942_0873 at 873.279 kb on - strand, within Synpcc7942_0873 at 873.289 kb on - strand, within Synpcc7942_0873 at 873.459 kb on - strand, within Synpcc7942_0873 at 873.592 kb on + strand, within Synpcc7942_0873 at 873.615 kb on + strand, within Synpcc7942_0873 at 873.703 kb on + strand, within Synpcc7942_0873 at 873.719 kb on + strand, within Synpcc7942_0873 at 873.729 kb on - strand, within Synpcc7942_0873 at 873.784 kb on - strand, within Synpcc7942_0873 at 873.963 kb on + strand, within Synpcc7942_0873 at 873.971 kb on - strand, within Synpcc7942_0873 at 873.971 kb on - strand, within Synpcc7942_0873 at 874.340 kb on + strand at 874.396 kb on + strand at 874.527 kb on + strand at 874.528 kb on - strand at 874.575 kb on + strand at 874.575 kb on + strand at 874.583 kb on - strand at 874.691 kb on - strand at 874.691 kb on - strand at 874.717 kb on + strand, within Synpcc7942_0874 at 874.790 kb on - strand, within Synpcc7942_0874 at 874.809 kb on + strand, within Synpcc7942_0874 at 874.852 kb on + strand, within Synpcc7942_0874 at 874.856 kb on - strand, within Synpcc7942_0874 at 874.859 kb on + strand, within Synpcc7942_0874 at 874.867 kb on - strand, within Synpcc7942_0874 at 874.997 kb on + strand, within Synpcc7942_0874 at 875.105 kb on - strand, within Synpcc7942_0874 at 875.122 kb on - strand, within Synpcc7942_0874 at 875.127 kb on - strand, within Synpcc7942_0874
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 20 mM remove 872,352 - -0.5 872,410 - +2.7 872,423 + Synpcc7942_0872 0.11 +0.2 872,424 - Synpcc7942_0872 0.11 -1.3 872,474 - Synpcc7942_0872 0.19 -2.3 872,537 + Synpcc7942_0872 0.30 +0.8 872,576 + Synpcc7942_0872 0.37 +0.5 872,576 + Synpcc7942_0872 0.37 -3.3 872,576 + Synpcc7942_0872 0.37 -0.9 872,576 + Synpcc7942_0872 0.37 -1.3 872,584 - Synpcc7942_0872 0.38 -0.2 872,584 - Synpcc7942_0872 0.38 -0.8 872,688 + Synpcc7942_0872 0.56 +0.1 872,688 + Synpcc7942_0872 0.56 -0.2 872,696 - Synpcc7942_0872 0.58 -2.2 872,763 + Synpcc7942_0872 0.69 +0.2 872,788 + Synpcc7942_0872 0.74 +0.4 872,807 + Synpcc7942_0872 0.77 -0.5 872,921 - -0.8 872,934 - -1.1 873,041 - +1.7 873,186 + +0.7 873,225 + Synpcc7942_0873 0.11 -1.1 873,227 + Synpcc7942_0873 0.11 +1.8 873,279 - Synpcc7942_0873 0.16 -0.0 873,289 - Synpcc7942_0873 0.17 -0.3 873,459 - Synpcc7942_0873 0.32 +0.2 873,592 + Synpcc7942_0873 0.44 +1.0 873,615 + Synpcc7942_0873 0.47 -0.7 873,703 + Synpcc7942_0873 0.55 +1.8 873,719 + Synpcc7942_0873 0.56 +1.2 873,729 - Synpcc7942_0873 0.57 +0.2 873,784 - Synpcc7942_0873 0.62 -0.7 873,963 + Synpcc7942_0873 0.79 +1.0 873,971 - Synpcc7942_0873 0.79 -1.1 873,971 - Synpcc7942_0873 0.79 -0.8 874,340 + +2.4 874,396 + -0.3 874,527 + -2.9 874,528 - +0.6 874,575 + -0.8 874,575 + -0.8 874,583 - +1.8 874,691 - -0.3 874,691 - +0.1 874,717 + Synpcc7942_0874 0.11 -0.3 874,790 - Synpcc7942_0874 0.13 +0.9 874,809 + Synpcc7942_0874 0.14 +0.0 874,852 + Synpcc7942_0874 0.15 -0.8 874,856 - Synpcc7942_0874 0.15 -0.1 874,859 + Synpcc7942_0874 0.15 -0.8 874,867 - Synpcc7942_0874 0.16 +1.5 874,997 + Synpcc7942_0874 0.20 -0.5 875,105 - Synpcc7942_0874 0.23 +0.7 875,122 - Synpcc7942_0874 0.24 -2.3 875,127 - Synpcc7942_0874 0.24 -0.7
Or see this region's nucleotide sequence