Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0565

Experiment: Chlorate 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntuvrB and Synpcc7942_0564 are separated by 119 nucleotidesSynpcc7942_0564 and Synpcc7942_0565 are separated by 100 nucleotidesSynpcc7942_0565 and Synpcc7942_0566 are separated by 11 nucleotidesSynpcc7942_0566 and Synpcc7942_0567 are separated by 1 nucleotides Synpcc7942_0563: uvrB - excinuclease ABC subunit B, at 543,654 to 545,654 uvrB Synpcc7942_0564: Synpcc7942_0564 - ATPase, at 545,774 to 546,487 _0564 Synpcc7942_0565: Synpcc7942_0565 - FHA domain containing protein, at 546,588 to 547,250 _0565 Synpcc7942_0566: Synpcc7942_0566 - HAD-superfamily hydrolase subfamily IIB, at 547,262 to 548,017 _0566 Synpcc7942_0567: Synpcc7942_0567 - hypothetical protein, at 548,019 to 549,368 _0567 Position (kb) 546 547 548Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 545.622 kb on - strandat 545.622 kb on - strandat 545.639 kb on + strandat 545.639 kb on + strandat 545.647 kb on - strandat 545.708 kb on - strandat 545.722 kb on + strandat 545.735 kb on - strandat 545.740 kb on - strandat 545.750 kb on - strandat 545.750 kb on - strandat 545.771 kb on + strandat 545.779 kb on - strandat 545.795 kb on - strandat 545.798 kb on + strandat 545.823 kb on + strandat 545.839 kb on + strandat 545.854 kb on - strand, within Synpcc7942_0564at 545.862 kb on + strand, within Synpcc7942_0564at 545.868 kb on + strand, within Synpcc7942_0564at 545.868 kb on + strand, within Synpcc7942_0564at 545.868 kb on + strand, within Synpcc7942_0564at 545.870 kb on - strand, within Synpcc7942_0564at 545.896 kb on + strand, within Synpcc7942_0564at 545.903 kb on - strand, within Synpcc7942_0564at 545.928 kb on + strand, within Synpcc7942_0564at 545.928 kb on + strand, within Synpcc7942_0564at 545.928 kb on + strand, within Synpcc7942_0564at 545.928 kb on + strand, within Synpcc7942_0564at 545.928 kb on + strand, within Synpcc7942_0564at 545.936 kb on - strand, within Synpcc7942_0564at 545.936 kb on - strand, within Synpcc7942_0564at 545.936 kb on - strand, within Synpcc7942_0564at 545.936 kb on - strand, within Synpcc7942_0564at 545.938 kb on + strand, within Synpcc7942_0564at 545.938 kb on + strand, within Synpcc7942_0564at 545.946 kb on - strand, within Synpcc7942_0564at 545.946 kb on - strand, within Synpcc7942_0564at 545.957 kb on + strand, within Synpcc7942_0564at 545.957 kb on + strand, within Synpcc7942_0564at 545.957 kb on + strand, within Synpcc7942_0564at 545.957 kb on + strand, within Synpcc7942_0564at 545.962 kb on + strand, within Synpcc7942_0564at 545.964 kb on + strand, within Synpcc7942_0564at 545.965 kb on - strand, within Synpcc7942_0564at 545.970 kb on - strand, within Synpcc7942_0564at 545.990 kb on + strand, within Synpcc7942_0564at 545.990 kb on + strand, within Synpcc7942_0564at 545.992 kb on - strand, within Synpcc7942_0564at 545.995 kb on + strand, within Synpcc7942_0564at 545.997 kb on - strand, within Synpcc7942_0564at 545.998 kb on - strand, within Synpcc7942_0564at 546.000 kb on + strandat 546.000 kb on + strand, within Synpcc7942_0564at 546.000 kb on + strand, within Synpcc7942_0564at 546.000 kb on + strand, within Synpcc7942_0564at 546.003 kb on - strand, within Synpcc7942_0564at 546.005 kb on + strand, within Synpcc7942_0564at 546.008 kb on - strand, within Synpcc7942_0564at 546.008 kb on - strand, within Synpcc7942_0564at 546.013 kb on - strand, within Synpcc7942_0564at 546.018 kb on + strand, within Synpcc7942_0564at 546.018 kb on + strand, within Synpcc7942_0564at 546.026 kb on - strand, within Synpcc7942_0564at 546.041 kb on + strand, within Synpcc7942_0564at 546.048 kb on + strand, within Synpcc7942_0564at 546.049 kb on - strand, within Synpcc7942_0564at 546.065 kb on + strand, within Synpcc7942_0564at 546.073 kb on + strand, within Synpcc7942_0564at 546.105 kb on + strand, within Synpcc7942_0564at 546.105 kb on + strand, within Synpcc7942_0564at 546.113 kb on - strand, within Synpcc7942_0564at 546.113 kb on - strand, within Synpcc7942_0564at 546.130 kb on - strand, within Synpcc7942_0564at 546.155 kb on + strand, within Synpcc7942_0564at 546.211 kb on + strand, within Synpcc7942_0564at 546.211 kb on - strand, within Synpcc7942_0564at 546.219 kb on - strand, within Synpcc7942_0564at 546.265 kb on + strand, within Synpcc7942_0564at 546.289 kb on + strand, within Synpcc7942_0564at 546.309 kb on - strand, within Synpcc7942_0564at 546.327 kb on + strand, within Synpcc7942_0564at 546.334 kb on - strand, within Synpcc7942_0564at 546.335 kb on - strand, within Synpcc7942_0564at 546.346 kb on - strand, within Synpcc7942_0564at 546.356 kb on + strand, within Synpcc7942_0564at 546.361 kb on + strand, within Synpcc7942_0564at 546.399 kb on + strand, within Synpcc7942_0564at 546.460 kb on + strandat 546.465 kb on + strandat 546.468 kb on - strandat 546.498 kb on + strandat 546.516 kb on - strandat 546.522 kb on + strandat 546.535 kb on - strandat 546.583 kb on + strandat 546.669 kb on + strand, within Synpcc7942_0565at 546.669 kb on + strand, within Synpcc7942_0565at 546.711 kb on - strand, within Synpcc7942_0565at 546.730 kb on + strand, within Synpcc7942_0565at 546.730 kb on + strand, within Synpcc7942_0565at 546.742 kb on + strand, within Synpcc7942_0565at 546.753 kb on + strand, within Synpcc7942_0565at 546.753 kb on + strand, within Synpcc7942_0565at 546.763 kb on + strand, within Synpcc7942_0565at 546.771 kb on - strand, within Synpcc7942_0565at 546.782 kb on - strand, within Synpcc7942_0565at 546.813 kb on + strand, within Synpcc7942_0565at 546.819 kb on + strand, within Synpcc7942_0565at 546.842 kb on - strand, within Synpcc7942_0565at 546.880 kb on + strand, within Synpcc7942_0565at 546.934 kb on - strand, within Synpcc7942_0565at 546.957 kb on + strand, within Synpcc7942_0565at 546.957 kb on + strand, within Synpcc7942_0565at 546.964 kb on + strand, within Synpcc7942_0565at 547.021 kb on - strand, within Synpcc7942_0565at 547.031 kb on - strand, within Synpcc7942_0565at 547.038 kb on + strand, within Synpcc7942_0565at 547.060 kb on + strand, within Synpcc7942_0565at 547.066 kb on - strand, within Synpcc7942_0565at 547.068 kb on - strand, within Synpcc7942_0565at 547.072 kb on + strand, within Synpcc7942_0565at 547.100 kb on + strandat 547.105 kb on + strand, within Synpcc7942_0565at 547.168 kb on + strand, within Synpcc7942_0565at 547.168 kb on + strand, within Synpcc7942_0565at 547.168 kb on + strand, within Synpcc7942_0565at 547.175 kb on + strand, within Synpcc7942_0565at 547.190 kb on - strandat 547.223 kb on + strandat 547.236 kb on - strandat 547.282 kb on + strandat 547.288 kb on + strandat 547.296 kb on - strandat 547.302 kb on + strandat 547.327 kb on + strandat 547.333 kb on + strandat 547.366 kb on - strand, within Synpcc7942_0566at 547.371 kb on + strand, within Synpcc7942_0566at 547.371 kb on - strand, within Synpcc7942_0566at 547.398 kb on + strand, within Synpcc7942_0566at 547.398 kb on + strand, within Synpcc7942_0566at 547.403 kb on - strand, within Synpcc7942_0566at 547.403 kb on - strand, within Synpcc7942_0566at 547.408 kb on + strand, within Synpcc7942_0566at 547.414 kb on - strand, within Synpcc7942_0566at 547.421 kb on - strand, within Synpcc7942_0566at 547.435 kb on + strand, within Synpcc7942_0566at 547.437 kb on - strand, within Synpcc7942_0566at 547.448 kb on + strand, within Synpcc7942_0566at 547.456 kb on - strand, within Synpcc7942_0566at 547.519 kb on + strand, within Synpcc7942_0566at 547.524 kb on + strand, within Synpcc7942_0566at 547.528 kb on - strand, within Synpcc7942_0566at 547.575 kb on + strand, within Synpcc7942_0566at 547.594 kb on + strand, within Synpcc7942_0566at 547.594 kb on + strand, within Synpcc7942_0566at 547.607 kb on - strand, within Synpcc7942_0566at 547.739 kb on + strand, within Synpcc7942_0566at 547.748 kb on + strand, within Synpcc7942_0566at 547.752 kb on - strand, within Synpcc7942_0566at 547.764 kb on + strand, within Synpcc7942_0566at 547.816 kb on + strand, within Synpcc7942_0566at 547.824 kb on - strand, within Synpcc7942_0566at 547.905 kb on + strand, within Synpcc7942_0566at 547.905 kb on + strand, within Synpcc7942_0566at 547.905 kb on + strand, within Synpcc7942_0566at 547.905 kb on + strand, within Synpcc7942_0566at 547.912 kb on + strand, within Synpcc7942_0566at 547.930 kb on + strand, within Synpcc7942_0566at 547.936 kb on + strand, within Synpcc7942_0566at 547.936 kb on + strand, within Synpcc7942_0566at 547.938 kb on - strand, within Synpcc7942_0566at 547.955 kb on - strandat 547.997 kb on - strandat 548.017 kb on + strandat 548.017 kb on + strandat 548.059 kb on - strandat 548.061 kb on - strandat 548.099 kb on + strandat 548.115 kb on - strandat 548.201 kb on - strand, within Synpcc7942_0567at 548.236 kb on - strand, within Synpcc7942_0567at 548.244 kb on + strand, within Synpcc7942_0567at 548.244 kb on + strand, within Synpcc7942_0567at 548.244 kb on + strand, within Synpcc7942_0567at 548.246 kb on + strand, within Synpcc7942_0567

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 20 mM
remove
545,622 - -0.8
545,622 - -1.7
545,639 + -1.1
545,639 + +1.5
545,647 - +0.6
545,708 - +1.3
545,722 + -1.3
545,735 - +1.0
545,740 - +1.6
545,750 - -1.3
545,750 - +2.7
545,771 + +2.1
545,779 - -0.8
545,795 - -1.3
545,798 + -1.3
545,823 + +0.3
545,839 + +1.0
545,854 - Synpcc7942_0564 0.11 +0.7
545,862 + Synpcc7942_0564 0.12 +0.3
545,868 + Synpcc7942_0564 0.13 +1.1
545,868 + Synpcc7942_0564 0.13 +3.4
545,868 + Synpcc7942_0564 0.13 -0.5
545,870 - Synpcc7942_0564 0.13 +0.3
545,896 + Synpcc7942_0564 0.17 +0.5
545,903 - Synpcc7942_0564 0.18 -0.3
545,928 + Synpcc7942_0564 0.22 +0.7
545,928 + Synpcc7942_0564 0.22 +2.3
545,928 + Synpcc7942_0564 0.22 +2.1
545,928 + Synpcc7942_0564 0.22 -2.8
545,928 + Synpcc7942_0564 0.22 -3.3
545,936 - Synpcc7942_0564 0.23 +1.2
545,936 - Synpcc7942_0564 0.23 +0.3
545,936 - Synpcc7942_0564 0.23 -1.6
545,936 - Synpcc7942_0564 0.23 +1.1
545,938 + Synpcc7942_0564 0.23 +1.9
545,938 + Synpcc7942_0564 0.23 -0.1
545,946 - Synpcc7942_0564 0.24 +1.5
545,946 - Synpcc7942_0564 0.24 +1.1
545,957 + Synpcc7942_0564 0.26 -0.7
545,957 + Synpcc7942_0564 0.26 +1.5
545,957 + Synpcc7942_0564 0.26 +0.9
545,957 + Synpcc7942_0564 0.26 +0.9
545,962 + Synpcc7942_0564 0.26 -2.3
545,964 + Synpcc7942_0564 0.27 -0.1
545,965 - Synpcc7942_0564 0.27 -1.3
545,970 - Synpcc7942_0564 0.27 -1.7
545,990 + Synpcc7942_0564 0.30 +2.3
545,990 + Synpcc7942_0564 0.30 +0.5
545,992 - Synpcc7942_0564 0.31 +0.4
545,995 + Synpcc7942_0564 0.31 -0.1
545,997 - Synpcc7942_0564 0.31 -0.3
545,998 - Synpcc7942_0564 0.31 +2.9
546,000 + +1.5
546,000 + Synpcc7942_0564 0.32 +1.1
546,000 + Synpcc7942_0564 0.32 -0.0
546,000 + Synpcc7942_0564 0.32 +1.3
546,003 - Synpcc7942_0564 0.32 -1.3
546,005 + Synpcc7942_0564 0.32 +1.1
546,008 - Synpcc7942_0564 0.33 +1.8
546,008 - Synpcc7942_0564 0.33 +1.6
546,013 - Synpcc7942_0564 0.33 -0.3
546,018 + Synpcc7942_0564 0.34 -0.2
546,018 + Synpcc7942_0564 0.34 +1.7
546,026 - Synpcc7942_0564 0.35 +1.9
546,041 + Synpcc7942_0564 0.37 -0.3
546,048 + Synpcc7942_0564 0.38 +0.3
546,049 - Synpcc7942_0564 0.39 -0.7
546,065 + Synpcc7942_0564 0.41 +2.0
546,073 + Synpcc7942_0564 0.42 +1.1
546,105 + Synpcc7942_0564 0.46 +3.6
546,105 + Synpcc7942_0564 0.46 -1.3
546,113 - Synpcc7942_0564 0.47 +0.3
546,113 - Synpcc7942_0564 0.47 +0.7
546,130 - Synpcc7942_0564 0.50 +1.9
546,155 + Synpcc7942_0564 0.53 -2.8
546,211 + Synpcc7942_0564 0.61 +2.3
546,211 - Synpcc7942_0564 0.61 +0.4
546,219 - Synpcc7942_0564 0.62 +0.6
546,265 + Synpcc7942_0564 0.69 +1.2
546,289 + Synpcc7942_0564 0.72 +1.7
546,309 - Synpcc7942_0564 0.75 +0.1
546,327 + Synpcc7942_0564 0.77 +0.1
546,334 - Synpcc7942_0564 0.78 -4.1
546,335 - Synpcc7942_0564 0.79 +1.0
546,346 - Synpcc7942_0564 0.80 +0.7
546,356 + Synpcc7942_0564 0.82 -1.3
546,361 + Synpcc7942_0564 0.82 +0.4
546,399 + Synpcc7942_0564 0.88 +0.5
546,460 + -2.3
546,465 + +2.2
546,468 - -0.4
546,498 + +1.1
546,516 - +0.7
546,522 + +2.0
546,535 - +2.0
546,583 + -0.3
546,669 + Synpcc7942_0565 0.12 -0.3
546,669 + Synpcc7942_0565 0.12 +1.5
546,711 - Synpcc7942_0565 0.19 -1.3
546,730 + Synpcc7942_0565 0.21 +0.9
546,730 + Synpcc7942_0565 0.21 +1.7
546,742 + Synpcc7942_0565 0.23 +1.0
546,753 + Synpcc7942_0565 0.25 +2.5
546,753 + Synpcc7942_0565 0.25 -1.7
546,763 + Synpcc7942_0565 0.26 -1.3
546,771 - Synpcc7942_0565 0.28 -0.5
546,782 - Synpcc7942_0565 0.29 +1.5
546,813 + Synpcc7942_0565 0.34 +1.8
546,819 + Synpcc7942_0565 0.35 +2.1
546,842 - Synpcc7942_0565 0.38 +0.3
546,880 + Synpcc7942_0565 0.44 +0.7
546,934 - Synpcc7942_0565 0.52 +0.5
546,957 + Synpcc7942_0565 0.56 -0.3
546,957 + Synpcc7942_0565 0.56 -0.3
546,964 + Synpcc7942_0565 0.57 +0.3
547,021 - Synpcc7942_0565 0.65 +0.7
547,031 - Synpcc7942_0565 0.67 +1.9
547,038 + Synpcc7942_0565 0.68 -0.3
547,060 + Synpcc7942_0565 0.71 -1.3
547,066 - Synpcc7942_0565 0.72 +1.4
547,068 - Synpcc7942_0565 0.72 +0.5
547,072 + Synpcc7942_0565 0.73 +2.0
547,100 + +1.7
547,105 + Synpcc7942_0565 0.78 +1.6
547,168 + Synpcc7942_0565 0.87 +2.6
547,168 + Synpcc7942_0565 0.87 -1.5
547,168 + Synpcc7942_0565 0.87 +2.5
547,175 + Synpcc7942_0565 0.89 +0.7
547,190 - +0.6
547,223 + +2.5
547,236 - +2.6
547,282 + +1.8
547,288 + +2.0
547,296 - -0.1
547,302 + +0.6
547,327 + -1.3
547,333 + -0.8
547,366 - Synpcc7942_0566 0.14 +0.7
547,371 + Synpcc7942_0566 0.14 +2.1
547,371 - Synpcc7942_0566 0.14 +1.1
547,398 + Synpcc7942_0566 0.18 +0.1
547,398 + Synpcc7942_0566 0.18 +2.1
547,403 - Synpcc7942_0566 0.19 -2.3
547,403 - Synpcc7942_0566 0.19 +2.7
547,408 + Synpcc7942_0566 0.19 +0.5
547,414 - Synpcc7942_0566 0.20 -2.3
547,421 - Synpcc7942_0566 0.21 +0.6
547,435 + Synpcc7942_0566 0.23 +0.8
547,437 - Synpcc7942_0566 0.23 -0.3
547,448 + Synpcc7942_0566 0.25 +0.5
547,456 - Synpcc7942_0566 0.26 -0.0
547,519 + Synpcc7942_0566 0.34 +0.7
547,524 + Synpcc7942_0566 0.35 +0.3
547,528 - Synpcc7942_0566 0.35 +0.2
547,575 + Synpcc7942_0566 0.41 +0.4
547,594 + Synpcc7942_0566 0.44 -0.3
547,594 + Synpcc7942_0566 0.44 +0.2
547,607 - Synpcc7942_0566 0.46 +1.2
547,739 + Synpcc7942_0566 0.63 +2.1
547,748 + Synpcc7942_0566 0.64 +0.1
547,752 - Synpcc7942_0566 0.65 -0.0
547,764 + Synpcc7942_0566 0.66 -0.6
547,816 + Synpcc7942_0566 0.73 -1.3
547,824 - Synpcc7942_0566 0.74 +2.3
547,905 + Synpcc7942_0566 0.85 -0.7
547,905 + Synpcc7942_0566 0.85 -0.3
547,905 + Synpcc7942_0566 0.85 +0.2
547,905 + Synpcc7942_0566 0.85 +1.5
547,912 + Synpcc7942_0566 0.86 +0.6
547,930 + Synpcc7942_0566 0.88 -3.3
547,936 + Synpcc7942_0566 0.89 -2.3
547,936 + Synpcc7942_0566 0.89 +0.2
547,938 - Synpcc7942_0566 0.89 -2.3
547,955 - +1.3
547,997 - +0.3
548,017 + +0.1
548,017 + -1.3
548,059 - +1.4
548,061 - -0.3
548,099 + +2.3
548,115 - +0.9
548,201 - Synpcc7942_0567 0.13 -1.3
548,236 - Synpcc7942_0567 0.16 +1.1
548,244 + Synpcc7942_0567 0.17 -3.3
548,244 + Synpcc7942_0567 0.17 +0.4
548,244 + Synpcc7942_0567 0.17 +0.8
548,246 + Synpcc7942_0567 0.17 +0.7

Or see this region's nucleotide sequence