Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0295

Experiment: Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpsbO and sat are separated by 189 nucleotidessat and Synpcc7942_0296 are separated by 145 nucleotides Synpcc7942_0294: psbO - photosystem II manganese-stabilizing polypeptide, at 290,394 to 291,227 psbO Synpcc7942_0295: sat - sulfate adenylyltransferase, at 291,417 to 292,604 sat Synpcc7942_0296: Synpcc7942_0296 - hypothetical protein, at 292,750 to 294,765 _0296 Position (kb) 291 292 293Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 290.517 kb on + strand, within psbOat 290.871 kb on - strand, within psbOat 290.989 kb on - strand, within psbOat 291.223 kb on - strandat 291.254 kb on - strandat 291.260 kb on + strandat 291.266 kb on + strandat 291.362 kb on - strandat 291.402 kb on + strandat 291.451 kb on - strandat 292.079 kb on + strand, within satat 292.089 kb on + strand, within satat 292.570 kb on - strandat 292.594 kb on + strandat 292.610 kb on + strandat 292.618 kb on - strandat 292.620 kb on - strandat 292.729 kb on + strandat 292.741 kb on + strandat 293.045 kb on + strand, within Synpcc7942_0296at 293.157 kb on - strand, within Synpcc7942_0296at 293.252 kb on + strand, within Synpcc7942_0296at 293.271 kb on - strand, within Synpcc7942_0296at 293.271 kb on - strand, within Synpcc7942_0296at 293.354 kb on - strand, within Synpcc7942_0296at 293.415 kb on + strand, within Synpcc7942_0296at 293.423 kb on - strand, within Synpcc7942_0296

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 20 mM
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290,517 + psbO Synpcc7942_0294 0.15 -2.2
290,871 - psbO Synpcc7942_0294 0.57 -2.2
290,989 - psbO Synpcc7942_0294 0.71 -2.2
291,223 - +0.4
291,254 - -0.3
291,260 + -0.2
291,266 + -1.2
291,362 - -1.2
291,402 + -1.2
291,451 - -0.2
292,079 + sat Synpcc7942_0295 0.56 -1.2
292,089 + sat Synpcc7942_0295 0.57 -1.2
292,570 - +0.6
292,594 + -1.7
292,610 + +2.9
292,618 - +0.8
292,620 - -1.5
292,729 + -0.8
292,741 + +0.8
293,045 + Synpcc7942_0296 0.15 -2.8
293,157 - Synpcc7942_0296 0.20 -2.2
293,252 + Synpcc7942_0296 0.25 -2.2
293,271 - Synpcc7942_0296 0.26 -1.2
293,271 - Synpcc7942_0296 0.26 -3.2
293,354 - Synpcc7942_0296 0.30 -3.2
293,415 + Synpcc7942_0296 0.33 -3.8
293,423 - Synpcc7942_0296 0.33 -2.8

Or see this region's nucleotide sequence