Experiment: Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0217 and tRNApro are separated by 55 nucleotides tRNApro and Synpcc7942_0218 are separated by 23 nucleotides Synpcc7942_0218 and Synpcc7942_0219 are separated by 124 nucleotides Synpcc7942_0219 and minD are separated by 2 nucleotides minD and glk are separated by 100 nucleotides
Synpcc7942_0217: Synpcc7942_0217 - phosphatase-like, at 219,113 to 219,871
_0217
Synpcc7942_R0029: tRNApro - tRNA-Pro, at 219,927 to 220,000
tRNApro
Synpcc7942_0218: Synpcc7942_0218 - hypothetical protein, at 220,024 to 220,191
_0218
Synpcc7942_0219: Synpcc7942_0219 - hypothetical protein, at 220,316 to 220,636
_0219
Synpcc7942_0220: minD - probable cell division inhibitor MinD, at 220,639 to 221,397
minD
Synpcc7942_0221: glk - glucokinase, at 221,498 to 222,535
glk
Position (kb) 220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 219.362 kb on + strand, within Synpcc7942_0217 at 219.369 kb on + strand, within Synpcc7942_0217 at 219.369 kb on + strand, within Synpcc7942_0217 at 219.369 kb on + strand, within Synpcc7942_0217 at 219.370 kb on - strand, within Synpcc7942_0217 at 219.377 kb on - strand, within Synpcc7942_0217 at 219.412 kb on + strand, within Synpcc7942_0217 at 219.430 kb on + strand, within Synpcc7942_0217 at 219.433 kb on - strand, within Synpcc7942_0217 at 219.444 kb on + strand, within Synpcc7942_0217 at 219.444 kb on + strand, within Synpcc7942_0217 at 219.452 kb on - strand, within Synpcc7942_0217 at 219.500 kb on - strand, within Synpcc7942_0217 at 219.500 kb on - strand, within Synpcc7942_0217 at 219.502 kb on + strand, within Synpcc7942_0217 at 219.502 kb on + strand, within Synpcc7942_0217 at 219.505 kb on - strand, within Synpcc7942_0217 at 219.509 kb on + strand, within Synpcc7942_0217 at 219.510 kb on - strand, within Synpcc7942_0217 at 219.525 kb on + strand, within Synpcc7942_0217 at 219.552 kb on + strand, within Synpcc7942_0217 at 219.558 kb on + strand, within Synpcc7942_0217 at 219.566 kb on - strand, within Synpcc7942_0217 at 219.583 kb on + strand, within Synpcc7942_0217 at 219.602 kb on - strand, within Synpcc7942_0217 at 219.613 kb on + strand, within Synpcc7942_0217 at 219.641 kb on + strand, within Synpcc7942_0217 at 219.647 kb on + strand at 219.649 kb on - strand, within Synpcc7942_0217 at 219.681 kb on + strand, within Synpcc7942_0217 at 219.688 kb on - strand, within Synpcc7942_0217 at 219.692 kb on + strand, within Synpcc7942_0217 at 219.694 kb on - strand, within Synpcc7942_0217 at 219.698 kb on + strand, within Synpcc7942_0217 at 219.733 kb on + strand, within Synpcc7942_0217 at 219.733 kb on + strand, within Synpcc7942_0217 at 219.733 kb on + strand, within Synpcc7942_0217 at 219.733 kb on + strand, within Synpcc7942_0217 at 219.736 kb on - strand, within Synpcc7942_0217 at 219.741 kb on - strand at 219.741 kb on - strand, within Synpcc7942_0217 at 219.743 kb on + strand, within Synpcc7942_0217 at 219.755 kb on + strand, within Synpcc7942_0217 at 219.755 kb on + strand, within Synpcc7942_0217 at 219.755 kb on + strand, within Synpcc7942_0217 at 219.758 kb on - strand, within Synpcc7942_0217 at 219.758 kb on - strand, within Synpcc7942_0217 at 219.760 kb on + strand, within Synpcc7942_0217 at 219.760 kb on + strand, within Synpcc7942_0217 at 219.760 kb on + strand, within Synpcc7942_0217 at 219.760 kb on + strand, within Synpcc7942_0217 at 219.763 kb on - strand, within Synpcc7942_0217 at 219.763 kb on - strand, within Synpcc7942_0217 at 219.795 kb on + strand, within Synpcc7942_0217 at 219.795 kb on + strand, within Synpcc7942_0217 at 219.804 kb on - strand at 219.850 kb on - strand at 219.866 kb on + strand at 219.874 kb on - strand at 219.899 kb on - strand at 219.899 kb on - strand at 220.021 kb on + strand at 220.030 kb on - strand at 220.051 kb on - strand, within Synpcc7942_0218 at 220.051 kb on - strand, within Synpcc7942_0218 at 220.188 kb on - strand at 220.222 kb on + strand at 220.230 kb on - strand at 220.246 kb on + strand at 220.251 kb on + strand at 220.259 kb on - strand at 220.314 kb on + strand at 220.314 kb on + strand at 220.319 kb on + strand at 220.319 kb on + strand at 220.319 kb on + strand at 220.319 kb on + strand at 220.319 kb on + strand at 220.319 kb on + strand at 220.322 kb on - strand at 220.327 kb on - strand at 220.327 kb on - strand at 220.334 kb on - strand at 220.346 kb on - strand at 220.372 kb on + strand, within Synpcc7942_0219 at 220.374 kb on - strand, within Synpcc7942_0219 at 220.374 kb on - strand, within Synpcc7942_0219 at 220.377 kb on + strand, within Synpcc7942_0219 at 220.463 kb on + strand, within Synpcc7942_0219 at 220.468 kb on + strand, within Synpcc7942_0219 at 220.484 kb on - strand, within Synpcc7942_0219 at 220.490 kb on - strand, within Synpcc7942_0219 at 220.542 kb on - strand, within Synpcc7942_0219 at 220.548 kb on - strand, within Synpcc7942_0219 at 220.563 kb on - strand, within Synpcc7942_0219 at 220.577 kb on + strand, within Synpcc7942_0219 at 220.611 kb on - strand at 220.631 kb on + strand at 220.631 kb on + strand at 220.631 kb on + strand at 220.631 kb on - strand at 220.631 kb on - strand at 220.639 kb on - strand at 220.639 kb on - strand at 220.639 kb on - strand at 220.674 kb on + strand at 220.674 kb on + strand at 220.682 kb on - strand at 220.682 kb on - strand at 220.692 kb on - strand at 220.706 kb on + strand at 220.714 kb on - strand at 220.719 kb on - strand, within minD at 220.732 kb on + strand, within minD at 220.761 kb on - strand, within minD at 220.786 kb on - strand, within minD at 220.795 kb on - strand, within minD at 220.814 kb on - strand, within minD at 220.881 kb on + strand, within minD at 220.903 kb on + strand, within minD at 220.943 kb on - strand, within minD at 221.035 kb on + strand, within minD at 221.056 kb on - strand, within minD at 221.066 kb on + strand, within minD at 221.074 kb on - strand, within minD at 221.122 kb on - strand, within minD at 221.158 kb on - strand, within minD at 221.159 kb on + strand, within minD at 221.175 kb on - strand, within minD at 221.245 kb on + strand, within minD at 221.245 kb on + strand, within minD at 221.245 kb on + strand, within minD at 221.253 kb on - strand, within minD at 221.254 kb on - strand, within minD at 221.263 kb on - strand, within minD at 221.282 kb on + strand, within minD at 221.287 kb on + strand, within minD at 221.290 kb on - strand, within minD at 221.290 kb on - strand, within minD at 221.292 kb on + strand, within minD at 221.292 kb on + strand, within minD at 221.300 kb on - strand, within minD at 221.305 kb on + strand, within minD at 221.313 kb on - strand, within minD at 221.313 kb on - strand, within minD at 221.313 kb on - strand, within minD at 221.313 kb on - strand, within minD at 221.319 kb on + strand, within minD at 221.321 kb on - strand, within minD at 221.355 kb on - strand at 221.385 kb on + strand at 221.393 kb on - strand at 221.393 kb on - strand at 221.405 kb on + strand at 221.418 kb on - strand at 221.419 kb on + strand at 221.437 kb on - strand at 221.459 kb on + strand at 221.461 kb on + strand at 221.467 kb on + strand at 221.467 kb on - strand at 221.469 kb on - strand at 221.494 kb on + strand at 221.494 kb on + strand at 221.494 kb on + strand at 221.494 kb on + strand at 221.494 kb on + strand at 221.494 kb on + strand at 221.502 kb on - strand at 221.502 kb on - strand at 221.502 kb on - strand at 221.502 kb on - strand at 221.582 kb on - strand at 221.582 kb on - strand at 221.614 kb on - strand, within glk at 221.615 kb on - strand, within glk at 221.617 kb on + strand, within glk at 221.619 kb on - strand, within glk at 221.619 kb on - strand, within glk at 221.625 kb on - strand, within glk at 221.636 kb on + strand, within glk
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 20 mM remove 219,362 + Synpcc7942_0217 0.33 +0.8 219,369 + Synpcc7942_0217 0.34 +0.6 219,369 + Synpcc7942_0217 0.34 +0.1 219,369 + Synpcc7942_0217 0.34 -1.2 219,370 - Synpcc7942_0217 0.34 +1.9 219,377 - Synpcc7942_0217 0.35 +2.5 219,412 + Synpcc7942_0217 0.39 -1.2 219,430 + Synpcc7942_0217 0.42 +0.5 219,433 - Synpcc7942_0217 0.42 +0.9 219,444 + Synpcc7942_0217 0.44 +2.1 219,444 + Synpcc7942_0217 0.44 -0.2 219,452 - Synpcc7942_0217 0.45 +2.3 219,500 - Synpcc7942_0217 0.51 +0.9 219,500 - Synpcc7942_0217 0.51 -0.8 219,502 + Synpcc7942_0217 0.51 -1.0 219,502 + Synpcc7942_0217 0.51 -2.2 219,505 - Synpcc7942_0217 0.52 +0.1 219,509 + Synpcc7942_0217 0.52 -2.2 219,510 - Synpcc7942_0217 0.52 -0.4 219,525 + Synpcc7942_0217 0.54 +0.2 219,552 + Synpcc7942_0217 0.58 -3.6 219,558 + Synpcc7942_0217 0.59 +2.1 219,566 - Synpcc7942_0217 0.60 +1.4 219,583 + Synpcc7942_0217 0.62 +0.8 219,602 - Synpcc7942_0217 0.64 +1.0 219,613 + Synpcc7942_0217 0.66 +1.0 219,641 + Synpcc7942_0217 0.70 +0.1 219,647 + +0.4 219,649 - Synpcc7942_0217 0.71 +0.4 219,681 + Synpcc7942_0217 0.75 +1.4 219,688 - Synpcc7942_0217 0.76 +0.2 219,692 + Synpcc7942_0217 0.76 -0.2 219,694 - Synpcc7942_0217 0.77 +0.4 219,698 + Synpcc7942_0217 0.77 +1.4 219,733 + Synpcc7942_0217 0.82 -0.2 219,733 + Synpcc7942_0217 0.82 +2.5 219,733 + Synpcc7942_0217 0.82 -1.2 219,733 + Synpcc7942_0217 0.82 +1.2 219,736 - Synpcc7942_0217 0.82 +1.1 219,741 - -2.2 219,741 - Synpcc7942_0217 0.83 +2.2 219,743 + Synpcc7942_0217 0.83 -0.2 219,755 + Synpcc7942_0217 0.85 +1.1 219,755 + Synpcc7942_0217 0.85 -2.2 219,755 + Synpcc7942_0217 0.85 +2.3 219,758 - Synpcc7942_0217 0.85 -0.9 219,758 - Synpcc7942_0217 0.85 -0.6 219,760 + Synpcc7942_0217 0.85 +0.9 219,760 + Synpcc7942_0217 0.85 +1.2 219,760 + Synpcc7942_0217 0.85 +0.8 219,760 + Synpcc7942_0217 0.85 +0.3 219,763 - Synpcc7942_0217 0.86 +2.4 219,763 - Synpcc7942_0217 0.86 +1.4 219,795 + Synpcc7942_0217 0.90 +0.2 219,795 + Synpcc7942_0217 0.90 -0.2 219,804 - +1.6 219,850 - +1.9 219,866 + +1.4 219,874 - +0.4 219,899 - -0.6 219,899 - -0.2 220,021 + +0.4 220,030 - -1.2 220,051 - Synpcc7942_0218 0.16 +0.9 220,051 - Synpcc7942_0218 0.16 -0.7 220,188 - +0.9 220,222 + +0.9 220,230 - +0.9 220,246 + +0.2 220,251 + +0.1 220,259 - +0.7 220,314 + -2.2 220,314 + +2.1 220,319 + +0.6 220,319 + -0.2 220,319 + +0.3 220,319 + +0.2 220,319 + +1.7 220,319 + -0.6 220,322 - -0.0 220,327 - +0.8 220,327 - -0.6 220,334 - -0.4 220,346 - +0.6 220,372 + Synpcc7942_0219 0.17 -0.6 220,374 - Synpcc7942_0219 0.18 +0.4 220,374 - Synpcc7942_0219 0.18 +1.5 220,377 + Synpcc7942_0219 0.19 -1.2 220,463 + Synpcc7942_0219 0.46 +1.4 220,468 + Synpcc7942_0219 0.47 +1.7 220,484 - Synpcc7942_0219 0.52 -0.6 220,490 - Synpcc7942_0219 0.54 +1.5 220,542 - Synpcc7942_0219 0.70 +2.1 220,548 - Synpcc7942_0219 0.72 +1.9 220,563 - Synpcc7942_0219 0.77 +1.1 220,577 + Synpcc7942_0219 0.81 +0.5 220,611 - +0.1 220,631 + -1.2 220,631 + -0.2 220,631 + -2.2 220,631 - +2.2 220,631 - -0.5 220,639 - -1.2 220,639 - -0.2 220,639 - -2.2 220,674 + +1.1 220,674 + -2.2 220,682 - -0.8 220,682 - +1.2 220,692 - +1.0 220,706 + -0.6 220,714 - +0.6 220,719 - minD Synpcc7942_0220 0.11 -0.2 220,732 + minD Synpcc7942_0220 0.12 -0.0 220,761 - minD Synpcc7942_0220 0.16 -0.9 220,786 - minD Synpcc7942_0220 0.19 -0.2 220,795 - minD Synpcc7942_0220 0.21 +1.1 220,814 - minD Synpcc7942_0220 0.23 +1.7 220,881 + minD Synpcc7942_0220 0.32 +0.4 220,903 + minD Synpcc7942_0220 0.35 +0.4 220,943 - minD Synpcc7942_0220 0.40 -0.2 221,035 + minD Synpcc7942_0220 0.52 +2.2 221,056 - minD Synpcc7942_0220 0.55 +2.1 221,066 + minD Synpcc7942_0220 0.56 +0.2 221,074 - minD Synpcc7942_0220 0.57 +1.6 221,122 - minD Synpcc7942_0220 0.64 -0.5 221,158 - minD Synpcc7942_0220 0.68 -0.2 221,159 + minD Synpcc7942_0220 0.69 -0.7 221,175 - minD Synpcc7942_0220 0.71 -2.0 221,245 + minD Synpcc7942_0220 0.80 -0.4 221,245 + minD Synpcc7942_0220 0.80 +1.9 221,245 + minD Synpcc7942_0220 0.80 +0.4 221,253 - minD Synpcc7942_0220 0.81 +0.3 221,254 - minD Synpcc7942_0220 0.81 -1.2 221,263 - minD Synpcc7942_0220 0.82 +1.7 221,282 + minD Synpcc7942_0220 0.85 -0.8 221,287 + minD Synpcc7942_0220 0.85 -0.3 221,290 - minD Synpcc7942_0220 0.86 -2.6 221,290 - minD Synpcc7942_0220 0.86 +1.3 221,292 + minD Synpcc7942_0220 0.86 -0.2 221,292 + minD Synpcc7942_0220 0.86 +0.4 221,300 - minD Synpcc7942_0220 0.87 -0.2 221,305 + minD Synpcc7942_0220 0.88 +0.1 221,313 - minD Synpcc7942_0220 0.89 -0.3 221,313 - minD Synpcc7942_0220 0.89 +0.7 221,313 - minD Synpcc7942_0220 0.89 +0.7 221,313 - minD Synpcc7942_0220 0.89 +0.8 221,319 + minD Synpcc7942_0220 0.90 +0.9 221,321 - minD Synpcc7942_0220 0.90 +2.7 221,355 - +0.4 221,385 + +0.8 221,393 - +4.2 221,393 - -1.6 221,405 + -0.2 221,418 - -1.2 221,419 + +1.1 221,437 - +0.0 221,459 + +1.4 221,461 + -1.2 221,467 + -1.8 221,467 - -0.6 221,469 - -1.5 221,494 + -1.2 221,494 + +0.4 221,494 + -0.6 221,494 + -0.2 221,494 + +1.0 221,494 + -0.2 221,502 - -0.6 221,502 - +0.6 221,502 - -1.2 221,502 - -0.5 221,582 - -0.1 221,582 - -2.2 221,614 - glk Synpcc7942_0221 0.11 +0.4 221,615 - glk Synpcc7942_0221 0.11 +1.9 221,617 + glk Synpcc7942_0221 0.11 +1.7 221,619 - glk Synpcc7942_0221 0.12 +0.1 221,619 - glk Synpcc7942_0221 0.12 +1.2 221,625 - glk Synpcc7942_0221 0.12 +1.7 221,636 + glk Synpcc7942_0221 0.13 -0.5
Or see this region's nucleotide sequence