Experiment: Chlorate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0102 and Synpcc7942_0103 are separated by 30 nucleotides Synpcc7942_0103 and Synpcc7942_0104 overlap by 14 nucleotides Synpcc7942_0104 and nadE are separated by 244 nucleotides
Synpcc7942_0102: Synpcc7942_0102 - hypothetical protein, at 102,674 to 103,237
_0102
Synpcc7942_0103: Synpcc7942_0103 - Ankyrin, at 103,268 to 103,645
_0103
Synpcc7942_0104: Synpcc7942_0104 - hypothetical protein, at 103,632 to 104,408
_0104
Synpcc7942_0105: nadE - NAD synthetase, at 104,653 to 106,377
nadE
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 102.635 kb on + strand at 102.635 kb on + strand at 102.680 kb on - strand at 102.809 kb on + strand, within Synpcc7942_0102 at 102.875 kb on + strand, within Synpcc7942_0102 at 102.877 kb on + strand, within Synpcc7942_0102 at 102.943 kb on - strand, within Synpcc7942_0102 at 102.948 kb on - strand, within Synpcc7942_0102 at 102.986 kb on - strand, within Synpcc7942_0102 at 103.248 kb on - strand at 103.293 kb on + strand at 103.301 kb on - strand at 103.307 kb on + strand, within Synpcc7942_0103 at 103.438 kb on - strand, within Synpcc7942_0103 at 103.508 kb on + strand, within Synpcc7942_0103 at 103.620 kb on - strand at 103.700 kb on - strand at 103.757 kb on - strand, within Synpcc7942_0104 at 103.757 kb on - strand, within Synpcc7942_0104 at 103.907 kb on - strand, within Synpcc7942_0104 at 103.947 kb on + strand, within Synpcc7942_0104 at 103.957 kb on + strand, within Synpcc7942_0104 at 103.957 kb on + strand, within Synpcc7942_0104 at 103.957 kb on + strand, within Synpcc7942_0104 at 103.989 kb on - strand, within Synpcc7942_0104 at 103.992 kb on + strand, within Synpcc7942_0104 at 104.047 kb on + strand, within Synpcc7942_0104 at 104.117 kb on + strand, within Synpcc7942_0104 at 104.137 kb on + strand, within Synpcc7942_0104 at 104.148 kb on - strand, within Synpcc7942_0104 at 104.188 kb on + strand, within Synpcc7942_0104 at 104.188 kb on + strand, within Synpcc7942_0104 at 104.196 kb on - strand, within Synpcc7942_0104 at 104.196 kb on - strand, within Synpcc7942_0104 at 104.239 kb on + strand, within Synpcc7942_0104 at 104.247 kb on + strand, within Synpcc7942_0104 at 104.258 kb on - strand, within Synpcc7942_0104 at 104.280 kb on + strand, within Synpcc7942_0104 at 104.287 kb on + strand, within Synpcc7942_0104 at 104.288 kb on - strand, within Synpcc7942_0104 at 104.294 kb on + strand, within Synpcc7942_0104 at 104.299 kb on + strand, within Synpcc7942_0104 at 104.302 kb on - strand, within Synpcc7942_0104 at 104.319 kb on - strand, within Synpcc7942_0104 at 104.331 kb on + strand at 104.339 kb on - strand at 104.346 kb on + strand at 104.364 kb on - strand at 104.365 kb on - strand at 104.380 kb on + strand at 104.574 kb on + strand at 104.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 20 mM remove 102,635 + +0.1 102,635 + -1.1 102,680 - +0.3 102,809 + Synpcc7942_0102 0.24 -1.2 102,875 + Synpcc7942_0102 0.36 +1.1 102,877 + Synpcc7942_0102 0.36 +0.5 102,943 - Synpcc7942_0102 0.48 -0.3 102,948 - Synpcc7942_0102 0.49 +0.6 102,986 - Synpcc7942_0102 0.55 +0.3 103,248 - -0.5 103,293 + -0.2 103,301 - +1.0 103,307 + Synpcc7942_0103 0.10 +1.9 103,438 - Synpcc7942_0103 0.45 +2.1 103,508 + Synpcc7942_0103 0.63 +0.9 103,620 - +2.2 103,700 - +2.3 103,757 - Synpcc7942_0104 0.16 +0.3 103,757 - Synpcc7942_0104 0.16 -0.2 103,907 - Synpcc7942_0104 0.35 +2.3 103,947 + Synpcc7942_0104 0.41 +2.9 103,957 + Synpcc7942_0104 0.42 -0.1 103,957 + Synpcc7942_0104 0.42 +1.5 103,957 + Synpcc7942_0104 0.42 -0.8 103,989 - Synpcc7942_0104 0.46 +1.3 103,992 + Synpcc7942_0104 0.46 +0.1 104,047 + Synpcc7942_0104 0.53 +2.6 104,117 + Synpcc7942_0104 0.62 +0.6 104,137 + Synpcc7942_0104 0.65 +2.2 104,148 - Synpcc7942_0104 0.66 +1.5 104,188 + Synpcc7942_0104 0.72 +1.9 104,188 + Synpcc7942_0104 0.72 -1.2 104,196 - Synpcc7942_0104 0.73 -1.2 104,196 - Synpcc7942_0104 0.73 -0.7 104,239 + Synpcc7942_0104 0.78 +1.8 104,247 + Synpcc7942_0104 0.79 +0.9 104,258 - Synpcc7942_0104 0.81 +1.8 104,280 + Synpcc7942_0104 0.83 -0.1 104,287 + Synpcc7942_0104 0.84 +2.8 104,288 - Synpcc7942_0104 0.84 +0.1 104,294 + Synpcc7942_0104 0.85 +2.3 104,299 + Synpcc7942_0104 0.86 +1.0 104,302 - Synpcc7942_0104 0.86 -1.0 104,319 - Synpcc7942_0104 0.88 +1.4 104,331 + -0.3 104,339 - -0.2 104,346 + +1.8 104,364 - -2.2 104,365 - +0.7 104,380 + +1.8 104,574 + -1.6 104,581 - +1.2
Or see this region's nucleotide sequence