Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_883

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
1,006,241	+				-0.9
1,006,241	+				-1.2
1,006,241	+				-1.2
1,006,241	+				-1.2
1,006,242	-				+0.5
1,006,242	-				+1.1
1,006,242	-				+0.4
1,006,266	+				-0.5
1,006,267	-				-2.4
1,006,284	+				-1.9
1,006,284	+				-0.1
1,006,284	+				-1.7
1,006,285	-				+0.8
1,006,285	-				-0.7
1,006,285	-				+1.5
1,006,285	-				-1.2
1,006,288	+				-1.0
1,006,288	+				-0.4
1,006,363	+				+0.0
1,006,433	+				+0.5
1,006,434	-				-0.9
1,006,705	+				+0.0
1,006,705	+				-1.2
1,006,705	+				+0.5
1,006,706	-		Pf1N1B4_882	0.10	-0.2
1,006,706	-		Pf1N1B4_882	0.10	+1.5
1,006,706	-		Pf1N1B4_882	0.10	+2.4
1,006,706	-		Pf1N1B4_882	0.10	-0.9
1,006,706	-		Pf1N1B4_882	0.10	+1.3
1,006,886	+		Pf1N1B4_882	0.44	-0.4
1,006,913	+		Pf1N1B4_882	0.50	+1.4
1,006,914	-		Pf1N1B4_882	0.50	+0.1
1,006,914	-		Pf1N1B4_882	0.50	+0.5
1,007,171	-				+1.1
1,007,171	-				+0.1
1,007,180	+				+0.8
1,007,180	+				-0.2
1,007,180	+				+0.1
1,007,181	-				+1.7
1,007,181	-				+0.1
1,007,245	+				-0.8
1,007,246	-				-2.1
1,007,246	-				-0.2
1,007,246	-				+0.9
1,007,286	+				-0.5
1,007,287	-				-0.9
1,007,287	-				+0.1
1,007,341	-		Pf1N1B4_883	0.18	-1.9
1,007,509	-		Pf1N1B4_883	0.46	+1.7
1,007,509	-		Pf1N1B4_883	0.46	-2.3
1,007,683	+		Pf1N1B4_883	0.75	-0.3
1,007,819	+				+0.1
1,007,819	+				-1.2
1,007,819	+				-0.0
1,007,819	+				-0.9
1,007,820	-				+1.9
1,007,820	-				+0.1
1,007,955	-				+0.1
1,007,955	-				+1.1
1,008,069	+		Pf1N1B4_884	0.16	-0.2
1,008,069	+				-0.9
1,008,069	+		Pf1N1B4_884	0.16	+0.8
1,008,069	+		Pf1N1B4_884	0.16	-0.7
1,008,070	-		Pf1N1B4_884	0.16	+0.1
1,008,080	-		Pf1N1B4_884	0.18	+0.8
1,008,094	-		Pf1N1B4_884	0.21	+0.0
1,008,273	+		Pf1N1B4_884	0.53	+0.5
1,008,273	+				-0.5
1,008,273	+		Pf1N1B4_884	0.53	+0.1
1,008,274	-		Pf1N1B4_884	0.53	+0.6
1,008,274	-		Pf1N1B4_884	0.53	-0.2
1,008,274	-		Pf1N1B4_884	0.53	-0.2
1,008,274	-		Pf1N1B4_884	0.53	-0.5
1,008,274	-		Pf1N1B4_884	0.53	-1.2
1,008,277	+		Pf1N1B4_884	0.54	-1.4
1,008,277	+		Pf1N1B4_884	0.54	+0.1
1,008,277	+		Pf1N1B4_884	0.54	-0.8
1,008,277	+		Pf1N1B4_884	0.54	-1.5
1,008,277	+		Pf1N1B4_884	0.54	+0.1
1,008,277	+		Pf1N1B4_884	0.54	-0.9
1,008,277	+		Pf1N1B4_884	0.54	+1.7
1,008,277	+		Pf1N1B4_884	0.54	+0.1
1,008,277	+		Pf1N1B4_884	0.54	-0.2
1,008,277	+		Pf1N1B4_884	0.54	+0.1
1,008,278	-		Pf1N1B4_884	0.54	+0.8
1,008,278	-		Pf1N1B4_884	0.54	-0.2
1,008,278	-		Pf1N1B4_884	0.54	-2.2
1,008,278	-		Pf1N1B4_884	0.54	-0.0
1,008,278	-		Pf1N1B4_884	0.54	+0.7
1,008,279	+		Pf1N1B4_884	0.54	+0.9
1,008,279	+		Pf1N1B4_884	0.54	+0.8
1,008,279	+		Pf1N1B4_884	0.54	-0.2
1,008,438	+		Pf1N1B4_884	0.83	-0.3
1,008,443	+		Pf1N1B4_884	0.84	+1.4
1,008,443	+		Pf1N1B4_884	0.84	-0.2
1,008,443	+		Pf1N1B4_884	0.84	-0.5
1,008,443	+		Pf1N1B4_884	0.84	-0.9
1,008,443	+		Pf1N1B4_884	0.84	-2.2
1,008,443	+		Pf1N1B4_884	0.84	-0.1
1,008,443	+		Pf1N1B4_884	0.84	-0.3
1,008,444	-		Pf1N1B4_884	0.84	-2.1
1,008,444	-		Pf1N1B4_884	0.84	+1.1
1,008,444	-		Pf1N1B4_884	0.84	-0.7
1,008,444	-		Pf1N1B4_884	0.84	+1.7
1,008,444	-		Pf1N1B4_884	0.84	+2.1
1,008,478	+				+0.1
1,008,529	+				+0.5
1,008,529	+				-0.7
1,008,529	+				-1.2
1,008,530	-				+0.4
1,008,530	-				-0.5
1,008,530	-				-0.5
1,008,538	+				+0.3
1,008,539	-				+1.1
1,008,539	-				+0.9
1,008,544	+				-1.3
1,008,544	+				-0.4
1,008,544	+				+1.6
1,008,544	+				+0.1
1,008,544	+				+0.4
1,008,544	+				-0.9
1,008,544	+				+0.0
1,008,544	+				-0.7
1,008,544	+				-0.5
1,008,545	-				-0.9
1,008,545	-				+0.5
1,008,545	-				-1.0
1,008,545	-				+1.1
1,008,545	-				-0.9
1,008,545	-				+0.8
1,008,554	+				+1.1
1,008,554	+				+1.1
1,008,555	-				+0.2
1,008,555	-				-0.4
1,008,556	+				-0.2
1,008,561	+				-0.2
1,008,561	+				-0.5
1,008,561	+				-1.3
1,008,562	-				-1.2
1,008,562	-				+1.1
1,008,562	-				+0.0
1,008,828	+		Pf1N1B4_885	0.46	+0.1
1,008,828	+		Pf1N1B4_885	0.46	+0.7
1,008,828	+		Pf1N1B4_885	0.46	+0.1
1,008,828	+		Pf1N1B4_885	0.46	+0.3
1,008,828	+		Pf1N1B4_885	0.46	-0.3
1,008,828	+		Pf1N1B4_885	0.46	+1.7