Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_715 and Pf1N1B4_716 are separated by 261 nucleotides Pf1N1B4_716 and Pf1N1B4_717 are separated by 27 nucleotides
Pf1N1B4_715 - Iron-regulated protein A precursor, at 814,643 to 815,986
_715
Pf1N1B4_716 - Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites, at 816,248 to 817,675
_716
Pf1N1B4_717 - Iron-regulated protein A precursor, at 817,703 to 818,767
_717
Position (kb) 816
817
818 Strain fitness (log2 ratio) -2
-1
0
1
2 at 815.378 kb on + strand, within Pf1N1B4_715 at 815.379 kb on - strand, within Pf1N1B4_715 at 815.431 kb on + strand, within Pf1N1B4_715 at 815.460 kb on - strand at 815.460 kb on - strand, within Pf1N1B4_715 at 815.637 kb on - strand, within Pf1N1B4_715 at 815.656 kb on + strand, within Pf1N1B4_715 at 815.663 kb on + strand, within Pf1N1B4_715 at 815.664 kb on - strand, within Pf1N1B4_715 at 815.675 kb on + strand, within Pf1N1B4_715 at 815.676 kb on - strand, within Pf1N1B4_715 at 815.831 kb on + strand, within Pf1N1B4_715 at 816.006 kb on + strand at 816.007 kb on - strand at 816.207 kb on - strand at 816.645 kb on - strand, within Pf1N1B4_716 at 816.740 kb on - strand, within Pf1N1B4_716 at 817.093 kb on + strand, within Pf1N1B4_716 at 817.229 kb on + strand, within Pf1N1B4_716 at 817.229 kb on + strand, within Pf1N1B4_716 at 817.229 kb on + strand, within Pf1N1B4_716 at 817.231 kb on + strand, within Pf1N1B4_716 at 817.398 kb on - strand, within Pf1N1B4_716 at 817.673 kb on + strand at 817.676 kb on + strand at 817.677 kb on - strand at 817.823 kb on + strand, within Pf1N1B4_717 at 817.824 kb on - strand, within Pf1N1B4_717 at 818.101 kb on - strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.183 kb on + strand, within Pf1N1B4_717 at 818.183 kb on + strand, within Pf1N1B4_717 at 818.183 kb on + strand, within Pf1N1B4_717 at 818.183 kb on + strand, within Pf1N1B4_717 at 818.184 kb on - strand, within Pf1N1B4_717 at 818.184 kb on - strand, within Pf1N1B4_717 at 818.184 kb on - strand, within Pf1N1B4_717 at 818.580 kb on - strand, within Pf1N1B4_717 at 818.672 kb on + strand at 818.672 kb on + strand at 818.672 kb on + strand at 818.672 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM remove 815,378 + Pf1N1B4_715 0.55 +0.6 815,379 - Pf1N1B4_715 0.55 +0.5 815,431 + Pf1N1B4_715 0.59 -1.0 815,460 - +2.0 815,460 - Pf1N1B4_715 0.61 -0.3 815,637 - Pf1N1B4_715 0.74 +1.2 815,656 + Pf1N1B4_715 0.75 -1.3 815,663 + Pf1N1B4_715 0.76 -0.1 815,664 - Pf1N1B4_715 0.76 +0.6 815,675 + Pf1N1B4_715 0.77 +1.0 815,676 - Pf1N1B4_715 0.77 +0.6 815,831 + Pf1N1B4_715 0.88 -0.6 816,006 + +0.1 816,007 - +0.3 816,207 - -1.8 816,645 - Pf1N1B4_716 0.28 -1.2 816,740 - Pf1N1B4_716 0.34 -1.3 817,093 + Pf1N1B4_716 0.59 -1.7 817,229 + Pf1N1B4_716 0.69 +0.7 817,229 + Pf1N1B4_716 0.69 -0.0 817,229 + Pf1N1B4_716 0.69 -1.5 817,231 + Pf1N1B4_716 0.69 -0.3 817,398 - Pf1N1B4_716 0.81 -0.2 817,673 + +0.6 817,676 + +1.0 817,677 - -1.0 817,823 + Pf1N1B4_717 0.11 -0.4 817,824 - Pf1N1B4_717 0.11 -0.8 818,101 - Pf1N1B4_717 0.37 +0.5 818,129 + Pf1N1B4_717 0.40 +0.3 818,129 + Pf1N1B4_717 0.40 -1.3 818,129 + -1.0 818,129 + Pf1N1B4_717 0.40 +1.6 818,129 + Pf1N1B4_717 0.40 -0.3 818,129 + +1.0 818,129 + Pf1N1B4_717 0.40 -1.6 818,129 + Pf1N1B4_717 0.40 +0.1 818,129 + Pf1N1B4_717 0.40 +0.4 818,129 + Pf1N1B4_717 0.40 +0.3 818,130 - Pf1N1B4_717 0.40 -0.6 818,130 - Pf1N1B4_717 0.40 -0.3 818,130 - Pf1N1B4_717 0.40 -1.6 818,130 - Pf1N1B4_717 0.40 -2.0 818,130 - Pf1N1B4_717 0.40 -0.8 818,130 - Pf1N1B4_717 0.40 -0.9 818,130 - Pf1N1B4_717 0.40 -0.6 818,130 - Pf1N1B4_717 0.40 -0.3 818,183 + Pf1N1B4_717 0.45 +0.7 818,183 + Pf1N1B4_717 0.45 -1.7 818,183 + Pf1N1B4_717 0.45 +0.2 818,183 + Pf1N1B4_717 0.45 -1.3 818,184 - Pf1N1B4_717 0.45 -1.8 818,184 - Pf1N1B4_717 0.45 -2.1 818,184 - Pf1N1B4_717 0.45 -1.3 818,580 - Pf1N1B4_717 0.82 -1.3 818,672 + -1.3 818,672 + -1.6 818,672 + -0.6 818,672 + +1.6
Or see this region's nucleotide sequence