Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_609

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_607 and Pf1N1B4_608 are separated by 109 nucleotidesPf1N1B4_608 and Pf1N1B4_609 are separated by 164 nucleotidesPf1N1B4_609 and Pf1N1B4_610 are separated by 177 nucleotides Pf1N1B4_607 - TonB-dependent hemin , ferrichrome receptor, at 699,251 to 701,812 _607 Pf1N1B4_608 - Heme oxygenase HemO, associated with heme uptake, at 701,922 to 702,530 _608 Pf1N1B4_609 - FIG039061: hypothetical protein related to heme utilization, at 702,695 to 703,090 _609 Pf1N1B4_610 - Methyl-accepting chemotaxis transducer, at 703,268 to 705,406 _610 Position (kb) 702 703 704Strain fitness (log2 ratio) -2 -1 0 1 2at 702.075 kb on + strand, within Pf1N1B4_608at 702.076 kb on - strand, within Pf1N1B4_608at 702.076 kb on - strand, within Pf1N1B4_608at 702.230 kb on + strand, within Pf1N1B4_608at 702.487 kb on + strandat 702.487 kb on + strandat 702.488 kb on - strandat 702.504 kb on + strandat 702.604 kb on + strandat 702.682 kb on - strandat 702.741 kb on + strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strandat 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 703.160 kb on + strandat 703.160 kb on + strandat 703.160 kb on + strandat 703.160 kb on + strandat 703.161 kb on - strandat 703.267 kb on + strandat 703.267 kb on + strandat 703.268 kb on - strandat 703.361 kb on + strandat 703.361 kb on + strandat 703.361 kb on + strandat 703.361 kb on + strandat 703.362 kb on - strandat 703.362 kb on - strandat 703.362 kb on - strandat 703.418 kb on - strandat 703.736 kb on + strand, within Pf1N1B4_610at 703.736 kb on + strand, within Pf1N1B4_610at 703.737 kb on - strand, within Pf1N1B4_610at 703.737 kb on - strand, within Pf1N1B4_610at 703.826 kb on + strand, within Pf1N1B4_610at 703.826 kb on + strand, within Pf1N1B4_610at 703.826 kb on + strand, within Pf1N1B4_610at 703.826 kb on + strand, within Pf1N1B4_610at 703.827 kb on - strand, within Pf1N1B4_610at 703.827 kb on - strand, within Pf1N1B4_610at 703.884 kb on - strand, within Pf1N1B4_610at 704.073 kb on + strand, within Pf1N1B4_610at 704.074 kb on - strand, within Pf1N1B4_610at 704.084 kb on + strand, within Pf1N1B4_610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
remove
702,075 + Pf1N1B4_608 0.25 +0.5
702,076 - Pf1N1B4_608 0.25 -1.4
702,076 - Pf1N1B4_608 0.25 +0.1
702,230 + Pf1N1B4_608 0.51 +0.0
702,487 + -0.1
702,487 + -0.3
702,488 - +0.5
702,504 + -1.1
702,604 + -2.2
702,682 - -1.4
702,741 + Pf1N1B4_609 0.12 -0.7
702,766 - Pf1N1B4_609 0.18 -0.7
702,766 - Pf1N1B4_609 0.18 -0.5
702,766 - Pf1N1B4_609 0.18 -1.8
702,766 - Pf1N1B4_609 0.18 -2.1
702,766 - -1.1
702,766 - Pf1N1B4_609 0.18 -0.7
702,766 - Pf1N1B4_609 0.18 -1.8
703,160 + -0.9
703,160 + -0.7
703,160 + -0.1
703,160 + -1.1
703,161 - +0.2
703,267 + +0.6
703,267 + -1.4
703,268 - -0.2
703,361 + -0.2
703,361 + -0.1
703,361 + -0.1
703,361 + +1.9
703,362 - -0.1
703,362 - -0.5
703,362 - -0.4
703,418 - -1.4
703,736 + Pf1N1B4_610 0.22 -0.5
703,736 + Pf1N1B4_610 0.22 +0.5
703,737 - Pf1N1B4_610 0.22 -0.1
703,737 - Pf1N1B4_610 0.22 -0.1
703,826 + Pf1N1B4_610 0.26 -0.7
703,826 + Pf1N1B4_610 0.26 -1.2
703,826 + Pf1N1B4_610 0.26 -0.2
703,826 + Pf1N1B4_610 0.26 -1.2
703,827 - Pf1N1B4_610 0.26 -0.2
703,827 - Pf1N1B4_610 0.26 +0.1
703,884 - Pf1N1B4_610 0.29 +0.5
704,073 + Pf1N1B4_610 0.38 +0.8
704,074 - Pf1N1B4_610 0.38 -0.8
704,084 + Pf1N1B4_610 0.38 -0.9

Or see this region's nucleotide sequence