Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_589 and Pf1N1B4_590 are separated by 219 nucleotides Pf1N1B4_590 and Pf1N1B4_591 are separated by 108 nucleotides
Pf1N1B4_589 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 679,222 to 680,691
_589
Pf1N1B4_590 - Phosphogluconate repressor HexR, RpiR family, at 680,911 to 681,780
_590
Pf1N1B4_591 - Aldose 1-epimerase, at 681,889 to 682,758
_591
Position (kb) 680
681
682 Strain fitness (log2 ratio) -2
-1
0
1
2 at 680.726 kb on - strand at 680.869 kb on + strand at 680.881 kb on + strand at 680.882 kb on - strand at 680.882 kb on - strand at 680.882 kb on - strand at 680.882 kb on - strand at 680.898 kb on + strand at 680.899 kb on - strand at 681.160 kb on + strand, within Pf1N1B4_590 at 681.160 kb on + strand, within Pf1N1B4_590 at 681.160 kb on + strand at 681.161 kb on - strand, within Pf1N1B4_590 at 681.161 kb on - strand, within Pf1N1B4_590 at 681.161 kb on - strand, within Pf1N1B4_590 at 681.202 kb on + strand, within Pf1N1B4_590 at 681.203 kb on - strand, within Pf1N1B4_590 at 681.203 kb on - strand, within Pf1N1B4_590 at 681.204 kb on + strand, within Pf1N1B4_590 at 681.618 kb on + strand, within Pf1N1B4_590 at 681.618 kb on + strand, within Pf1N1B4_590 at 681.619 kb on - strand, within Pf1N1B4_590 at 681.619 kb on - strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.622 kb on + strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.623 kb on - strand, within Pf1N1B4_590 at 681.624 kb on + strand, within Pf1N1B4_590 at 681.624 kb on + strand, within Pf1N1B4_590 at 681.624 kb on + strand, within Pf1N1B4_590 at 681.625 kb on - strand, within Pf1N1B4_590 at 681.774 kb on + strand at 681.774 kb on + strand at 681.774 kb on + strand at 681.774 kb on + strand at 681.775 kb on - strand at 681.778 kb on + strand at 681.779 kb on - strand at 682.007 kb on - strand, within Pf1N1B4_591 at 682.007 kb on - strand at 682.269 kb on + strand, within Pf1N1B4_591 at 682.269 kb on + strand, within Pf1N1B4_591 at 682.396 kb on + strand, within Pf1N1B4_591 at 682.397 kb on - strand, within Pf1N1B4_591 at 682.397 kb on - strand, within Pf1N1B4_591 at 682.397 kb on - strand, within Pf1N1B4_591 at 682.397 kb on - strand, within Pf1N1B4_591 at 682.397 kb on - strand, within Pf1N1B4_591 at 682.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM remove 680,726 - +0.7 680,869 + +0.9 680,881 + -0.5 680,882 - +0.6 680,882 - +1.1 680,882 - +1.4 680,882 - +1.3 680,898 + +0.9 680,899 - +1.5 681,160 + Pf1N1B4_590 0.29 +0.8 681,160 + Pf1N1B4_590 0.29 +0.6 681,160 + +1.5 681,161 - Pf1N1B4_590 0.29 +1.1 681,161 - Pf1N1B4_590 0.29 +1.2 681,161 - Pf1N1B4_590 0.29 -0.5 681,202 + Pf1N1B4_590 0.33 -1.1 681,203 - Pf1N1B4_590 0.34 +1.6 681,203 - Pf1N1B4_590 0.34 -0.1 681,204 + Pf1N1B4_590 0.34 +0.9 681,618 + Pf1N1B4_590 0.81 -0.3 681,618 + Pf1N1B4_590 0.81 +0.4 681,619 - Pf1N1B4_590 0.81 -1.1 681,619 - Pf1N1B4_590 0.81 -1.7 681,622 + Pf1N1B4_590 0.82 +0.7 681,622 + Pf1N1B4_590 0.82 +1.7 681,622 + Pf1N1B4_590 0.82 +0.4 681,622 + Pf1N1B4_590 0.82 +1.4 681,622 + +1.9 681,622 + Pf1N1B4_590 0.82 +1.8 681,622 + Pf1N1B4_590 0.82 +0.6 681,622 + Pf1N1B4_590 0.82 +0.6 681,622 + Pf1N1B4_590 0.82 +0.3 681,622 + Pf1N1B4_590 0.82 +2.1 681,622 + -0.1 681,622 + Pf1N1B4_590 0.82 +1.2 681,622 + Pf1N1B4_590 0.82 +0.3 681,622 + Pf1N1B4_590 0.82 +0.0 681,622 + Pf1N1B4_590 0.82 +1.2 681,622 + Pf1N1B4_590 0.82 +0.1 681,622 + Pf1N1B4_590 0.82 +0.6 681,622 + Pf1N1B4_590 0.82 +0.2 681,622 + -0.4 681,622 + Pf1N1B4_590 0.82 +0.8 681,622 + Pf1N1B4_590 0.82 +2.1 681,622 + Pf1N1B4_590 0.82 +1.4 681,622 + Pf1N1B4_590 0.82 +1.6 681,622 + Pf1N1B4_590 0.82 +0.2 681,622 + Pf1N1B4_590 0.82 -0.1 681,622 + Pf1N1B4_590 0.82 +0.6 681,623 - Pf1N1B4_590 0.82 -0.1 681,623 - Pf1N1B4_590 0.82 +0.6 681,623 - Pf1N1B4_590 0.82 +0.3 681,623 - Pf1N1B4_590 0.82 +0.3 681,623 - Pf1N1B4_590 0.82 +0.6 681,623 - Pf1N1B4_590 0.82 -0.5 681,623 - Pf1N1B4_590 0.82 -2.7 681,623 - Pf1N1B4_590 0.82 +0.6 681,623 - Pf1N1B4_590 0.82 +1.9 681,623 - Pf1N1B4_590 0.82 -0.9 681,623 - Pf1N1B4_590 0.82 -0.7 681,623 - Pf1N1B4_590 0.82 +0.7 681,623 - Pf1N1B4_590 0.82 -0.7 681,623 - Pf1N1B4_590 0.82 +1.9 681,623 - Pf1N1B4_590 0.82 +0.8 681,623 - Pf1N1B4_590 0.82 -0.4 681,623 - Pf1N1B4_590 0.82 +0.9 681,623 - Pf1N1B4_590 0.82 +1.4 681,623 - Pf1N1B4_590 0.82 +1.3 681,623 - Pf1N1B4_590 0.82 +0.7 681,623 - Pf1N1B4_590 0.82 +0.3 681,623 - Pf1N1B4_590 0.82 -0.0 681,623 - Pf1N1B4_590 0.82 -0.7 681,623 - Pf1N1B4_590 0.82 -0.1 681,623 - Pf1N1B4_590 0.82 +0.8 681,623 - Pf1N1B4_590 0.82 +0.9 681,623 - Pf1N1B4_590 0.82 -0.4 681,623 - Pf1N1B4_590 0.82 +0.9 681,623 - Pf1N1B4_590 0.82 -1.0 681,623 - Pf1N1B4_590 0.82 -0.1 681,623 - Pf1N1B4_590 0.82 -0.7 681,623 - Pf1N1B4_590 0.82 +1.1 681,623 - Pf1N1B4_590 0.82 +0.6 681,623 - Pf1N1B4_590 0.82 -0.5 681,623 - Pf1N1B4_590 0.82 +0.9 681,623 - Pf1N1B4_590 0.82 +0.1 681,623 - Pf1N1B4_590 0.82 +0.7 681,623 - Pf1N1B4_590 0.82 +0.3 681,624 + Pf1N1B4_590 0.82 -0.1 681,624 + Pf1N1B4_590 0.82 +1.1 681,624 + Pf1N1B4_590 0.82 +1.3 681,625 - Pf1N1B4_590 0.82 +2.1 681,774 + +0.3 681,774 + +0.4 681,774 + -0.5 681,774 + +0.3 681,775 - +0.9 681,778 + -0.4 681,779 - +1.5 682,007 - Pf1N1B4_591 0.14 -0.4 682,007 - +2.1 682,269 + Pf1N1B4_591 0.44 -0.1 682,269 + Pf1N1B4_591 0.44 +0.9 682,396 + Pf1N1B4_591 0.58 -0.4 682,397 - Pf1N1B4_591 0.58 -0.9 682,397 - Pf1N1B4_591 0.58 -1.9 682,397 - Pf1N1B4_591 0.58 -1.3 682,397 - Pf1N1B4_591 0.58 -1.2 682,397 - Pf1N1B4_591 0.58 -1.4 682,742 - -0.8
Or see this region's nucleotide sequence