Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5801

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_5800 and Pf1N1B4_5801 overlap by 27 nucleotidesPf1N1B4_5801 and Pf1N1B4_5802 are separated by 146 nucleotides Pf1N1B4_5800 - Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10), at 235,274 to 236,638 _5800 Pf1N1B4_5801 - hypothetical protein, at 236,612 to 236,746 _5801 Pf1N1B4_5802 - benABC operon transcriptional activator BenR, at 236,893 to 237,744 _5802 Position (kb) 236 237Strain fitness (log2 ratio) -2 -1 0 1 2at 235.632 kb on + strand, within Pf1N1B4_5800at 235.633 kb on - strand, within Pf1N1B4_5800at 235.633 kb on - strand, within Pf1N1B4_5800at 235.707 kb on + strand, within Pf1N1B4_5800at 235.803 kb on + strand, within Pf1N1B4_5800at 235.870 kb on - strand, within Pf1N1B4_5800at 235.870 kb on - strand, within Pf1N1B4_5800at 236.037 kb on + strand, within Pf1N1B4_5800at 236.037 kb on + strand, within Pf1N1B4_5800at 236.037 kb on + strand, within Pf1N1B4_5800at 236.038 kb on - strand, within Pf1N1B4_5800at 236.043 kb on + strand, within Pf1N1B4_5800at 236.043 kb on + strand, within Pf1N1B4_5800at 236.043 kb on + strand, within Pf1N1B4_5800at 236.043 kb on + strand, within Pf1N1B4_5800at 236.043 kb on + strand, within Pf1N1B4_5800at 236.043 kb on + strand, within Pf1N1B4_5800at 236.043 kb on + strand, within Pf1N1B4_5800at 236.044 kb on - strand, within Pf1N1B4_5800at 236.044 kb on - strand, within Pf1N1B4_5800at 236.322 kb on + strand, within Pf1N1B4_5800at 236.322 kb on + strand, within Pf1N1B4_5800at 236.323 kb on - strand, within Pf1N1B4_5800at 236.323 kb on - strand, within Pf1N1B4_5800at 236.323 kb on - strand, within Pf1N1B4_5800at 236.323 kb on - strand, within Pf1N1B4_5800at 236.323 kb on - strand, within Pf1N1B4_5800at 236.323 kb on - strandat 236.386 kb on + strand, within Pf1N1B4_5800at 236.454 kb on + strand, within Pf1N1B4_5800at 236.497 kb on - strand, within Pf1N1B4_5800at 236.577 kb on + strandat 236.577 kb on + strandat 236.619 kb on + strandat 236.723 kb on + strand, within Pf1N1B4_5801at 237.046 kb on - strand, within Pf1N1B4_5802at 237.046 kb on - strand, within Pf1N1B4_5802at 237.046 kb on - strand, within Pf1N1B4_5802at 237.072 kb on - strand, within Pf1N1B4_5802at 237.113 kb on + strand, within Pf1N1B4_5802at 237.192 kb on - strand, within Pf1N1B4_5802at 237.192 kb on - strand, within Pf1N1B4_5802at 237.294 kb on - strandat 237.507 kb on - strand, within Pf1N1B4_5802at 237.507 kb on - strand, within Pf1N1B4_5802at 237.507 kb on - strand, within Pf1N1B4_5802at 237.507 kb on - strand, within Pf1N1B4_5802at 237.564 kb on - strand, within Pf1N1B4_5802at 237.564 kb on - strand, within Pf1N1B4_5802at 237.564 kb on - strand, within Pf1N1B4_5802at 237.564 kb on - strand, within Pf1N1B4_5802at 237.623 kb on + strand, within Pf1N1B4_5802at 237.624 kb on - strand, within Pf1N1B4_5802at 237.648 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
remove
235,632 + Pf1N1B4_5800 0.26 +0.2
235,633 - Pf1N1B4_5800 0.26 -0.9
235,633 - Pf1N1B4_5800 0.26 +0.7
235,707 + Pf1N1B4_5800 0.32 -0.9
235,803 + Pf1N1B4_5800 0.39 +0.1
235,870 - Pf1N1B4_5800 0.44 -1.1
235,870 - Pf1N1B4_5800 0.44 -0.5
236,037 + Pf1N1B4_5800 0.56 -0.2
236,037 + Pf1N1B4_5800 0.56 -1.4
236,037 + Pf1N1B4_5800 0.56 -2.7
236,038 - Pf1N1B4_5800 0.56 +0.5
236,043 + Pf1N1B4_5800 0.56 +0.4
236,043 + Pf1N1B4_5800 0.56 +0.8
236,043 + Pf1N1B4_5800 0.56 +1.0
236,043 + Pf1N1B4_5800 0.56 -0.3
236,043 + Pf1N1B4_5800 0.56 -0.8
236,043 + Pf1N1B4_5800 0.56 -0.3
236,043 + Pf1N1B4_5800 0.56 -0.9
236,044 - Pf1N1B4_5800 0.56 -0.3
236,044 - Pf1N1B4_5800 0.56 +1.2
236,322 + Pf1N1B4_5800 0.77 -1.0
236,322 + Pf1N1B4_5800 0.77 -2.4
236,323 - Pf1N1B4_5800 0.77 -0.6
236,323 - Pf1N1B4_5800 0.77 -0.8
236,323 - Pf1N1B4_5800 0.77 -1.1
236,323 - Pf1N1B4_5800 0.77 +0.1
236,323 - Pf1N1B4_5800 0.77 -1.0
236,323 - +0.5
236,386 + Pf1N1B4_5800 0.81 +0.5
236,454 + Pf1N1B4_5800 0.86 -0.5
236,497 - Pf1N1B4_5800 0.90 +0.7
236,577 + -1.0
236,577 + -0.5
236,619 + -0.5
236,723 + Pf1N1B4_5801 0.82 +0.5
237,046 - Pf1N1B4_5802 0.18 +0.1
237,046 - Pf1N1B4_5802 0.18 -0.1
237,046 - Pf1N1B4_5802 0.18 -1.1
237,072 - Pf1N1B4_5802 0.21 -0.0
237,113 + Pf1N1B4_5802 0.26 +2.0
237,192 - Pf1N1B4_5802 0.35 -0.0
237,192 - Pf1N1B4_5802 0.35 -0.4
237,294 - +0.5
237,507 - Pf1N1B4_5802 0.72 -1.9
237,507 - Pf1N1B4_5802 0.72 -0.5
237,507 - Pf1N1B4_5802 0.72 -0.0
237,507 - Pf1N1B4_5802 0.72 +0.5
237,564 - Pf1N1B4_5802 0.79 -1.4
237,564 - Pf1N1B4_5802 0.79 +0.9
237,564 - Pf1N1B4_5802 0.79 +1.5
237,564 - Pf1N1B4_5802 0.79 -0.7
237,623 + Pf1N1B4_5802 0.86 -1.1
237,624 - Pf1N1B4_5802 0.86 -0.5
237,648 + +1.5

Or see this region's nucleotide sequence