Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5573 and Pf1N1B4_5574 are separated by 98 nucleotides Pf1N1B4_5574 and Pf1N1B4_5575 are separated by 749 nucleotides
Pf1N1B4_5573 - hypothetical protein, at 344,053 to 344,199
_5573
Pf1N1B4_5574 - hypothetical protein, at 344,298 to 344,504
_5574
Pf1N1B4_5575 - hypothetical protein, at 345,254 to 345,634
_5575
Position (kb) 344
345 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.363 kb on + strand at 343.363 kb on + strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.486 kb on - strand at 343.560 kb on - strand at 343.564 kb on - strand at 343.565 kb on + strand at 343.565 kb on + strand at 343.566 kb on - strand at 343.566 kb on - strand at 343.566 kb on - strand at 343.681 kb on - strand at 343.801 kb on + strand at 343.802 kb on - strand at 343.802 kb on - strand at 343.802 kb on - strand at 343.837 kb on - strand at 343.919 kb on - strand at 343.919 kb on - strand at 343.919 kb on - strand at 343.919 kb on - strand at 343.919 kb on - strand at 343.920 kb on + strand at 343.920 kb on + strand at 343.963 kb on - strand at 343.992 kb on + strand at 343.992 kb on + strand at 343.993 kb on - strand at 343.993 kb on - strand at 343.993 kb on - strand at 343.993 kb on - strand at 343.993 kb on - strand at 343.993 kb on - strand at 344.252 kb on - strand at 344.252 kb on - strand at 344.252 kb on - strand at 344.252 kb on - strand at 344.252 kb on - strand at 344.252 kb on - strand at 344.362 kb on - strand, within Pf1N1B4_5574 at 344.362 kb on - strand, within Pf1N1B4_5574 at 344.388 kb on - strand, within Pf1N1B4_5574 at 344.674 kb on + strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.779 kb on - strand at 344.885 kb on + strand at 344.885 kb on + strand at 344.886 kb on - strand at 344.886 kb on - strand at 344.995 kb on - strand at 345.001 kb on + strand at 345.002 kb on - strand at 345.004 kb on + strand at 345.005 kb on - strand at 345.005 kb on - strand at 345.016 kb on - strand at 345.020 kb on - strand at 345.020 kb on - strand at 345.053 kb on - strand at 345.093 kb on + strand at 345.178 kb on - strand at 345.255 kb on + strand at 345.343 kb on - strand, within Pf1N1B4_5575 at 345.378 kb on - strand at 345.380 kb on + strand, within Pf1N1B4_5575 at 345.380 kb on + strand, within Pf1N1B4_5575 at 345.416 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM remove 343,363 + +0.5 343,363 + -0.5 343,364 - +0.5 343,364 - -0.4 343,364 - +0.7 343,486 - +0.1 343,560 - -2.1 343,564 - +1.1 343,565 + -0.4 343,565 + -0.5 343,566 - -0.8 343,566 - -2.7 343,566 - +0.8 343,681 - +1.6 343,801 + +0.8 343,802 - +0.4 343,802 - -0.1 343,802 - +1.6 343,837 - -0.3 343,919 - +0.9 343,919 - -1.5 343,919 - +0.7 343,919 - +0.6 343,919 - +1.1 343,920 + +1.3 343,920 + +0.1 343,963 - +1.5 343,992 + +1.1 343,992 + +1.1 343,993 - +0.5 343,993 - -0.4 343,993 - -0.8 343,993 - +0.7 343,993 - -1.5 343,993 - +0.4 344,252 - +0.1 344,252 - +1.4 344,252 - +0.1 344,252 - +0.6 344,252 - +0.5 344,252 - +1.1 344,362 - Pf1N1B4_5574 0.31 -0.1 344,362 - Pf1N1B4_5574 0.31 +0.9 344,388 - Pf1N1B4_5574 0.43 +0.5 344,674 + +0.7 344,675 - +0.1 344,675 - +0.1 344,675 - +0.3 344,675 - +0.5 344,675 - +0.2 344,779 - +1.8 344,885 + -1.5 344,885 + +1.5 344,886 - -2.3 344,886 - +0.1 344,995 - +0.2 345,001 + -0.9 345,002 - -0.2 345,004 + +1.1 345,005 - -1.7 345,005 - -1.3 345,016 - +0.4 345,020 - -0.4 345,020 - +0.6 345,053 - +0.5 345,093 + +0.8 345,178 - -0.5 345,255 + -1.1 345,343 - Pf1N1B4_5575 0.23 +0.5 345,378 - +0.1 345,380 + Pf1N1B4_5575 0.33 +0.1 345,380 + Pf1N1B4_5575 0.33 -1.3 345,416 - -1.3
Or see this region's nucleotide sequence