Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5377

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
109,078	+				-0.9
109,078	+				-0.4
109,078	+				+0.7
109,079	-				+1.1
109,213	+				+1.7
109,213	+				-0.5
109,214	-				-0.9
109,300	-				+0.1
109,300	-				-0.5
109,357	+				-1.2
109,358	-		Pf1N1B4_5376	0.10	+0.3
109,361	-		Pf1N1B4_5376	0.11	+1.1
109,482	+		Pf1N1B4_5376	0.35	+0.1
109,483	-		Pf1N1B4_5376	0.35	-0.2
109,483	-		Pf1N1B4_5376	0.35	+0.3
109,612	+		Pf1N1B4_5376	0.61	-0.9
109,777	+				+1.5
109,791	+				+1.1
109,791	+				+0.1
109,791	+				-0.1
109,791	+				+0.1
109,792	-				+1.1
109,792	-				-1.6
109,792	-				-0.5
109,792	-				+1.1
109,792	-				-2.2
109,792	-				+0.2
109,966	-				+0.1
109,966	-				+0.4
109,966	-				-0.2
109,966	-				-1.5
110,005	+				-0.9
110,005	+				+0.1
110,005	+				-1.7
110,019	-				+1.1
110,154	-		Pf1N1B4_5377	0.28	-1.8
110,170	+		Pf1N1B4_5377	0.31	-1.1
110,263	-		Pf1N1B4_5377	0.50	-1.8
110,289	-		Pf1N1B4_5377	0.55	-1.2
110,390	+		Pf1N1B4_5377	0.75	+0.5
110,391	-		Pf1N1B4_5377	0.76	-0.3
110,494	-				-0.7
110,494	-				+0.2
110,494	-				-0.5
110,580	+				-0.5
110,581	-				-0.5
110,605	+				+1.1
110,605	+				+0.8
110,605	+				+1.5
110,605	+				-1.7
110,605	+				-0.2
110,605	+				-0.0
110,606	-				+1.1
110,606	-				+1.5
110,606	-				+0.5
110,606	-				-0.2
110,606	-				-0.5
110,606	-				+1.1
110,606	-				+0.8
110,606	-				-0.2
110,606	-				+0.5
110,609	+				-0.5
110,609	+				-0.2
110,609	+				-0.2
110,609	+				-0.2
110,610	-				-0.2
110,610	-				+0.1
110,653	+				-0.7
110,653	+				-2.1
110,653	+				+0.8
110,654	-				+0.5
110,654	-				+0.3
110,689	+				-0.2
110,690	-				+0.1
110,697	+				+0.4
110,697	+				+0.7
110,697	+				-0.5
110,698	-				+0.7
110,698	-				+0.9
110,698	-				+1.1
110,698	-				-0.2
111,110	+				+2.1
111,110	+				+0.5
111,111	-				+2.7
111,111	-				-1.7
111,111	-				-0.9
111,111	-				+0.9
111,111	-				-0.9