Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5346

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
86,352	+		Pf1N1B4_5344	0.36	+0.7
86,352	+		Pf1N1B4_5344	0.36	+0.5
86,352	+		Pf1N1B4_5344	0.36	+0.9
86,353	-		Pf1N1B4_5344	0.36	+1.1
86,353	-		Pf1N1B4_5344	0.36	+0.2
86,353	-		Pf1N1B4_5344	0.36	-0.2
86,353	-		Pf1N1B4_5344	0.36	-1.2
86,369	+				+0.5
86,369	+		Pf1N1B4_5344	0.38	+0.8
86,369	+		Pf1N1B4_5344	0.38	-0.5
86,369	+		Pf1N1B4_5344	0.38	+0.7
86,370	-		Pf1N1B4_5344	0.38	-0.5
86,370	-		Pf1N1B4_5344	0.38	-0.2
86,370	-		Pf1N1B4_5344	0.38	-0.2
86,370	-		Pf1N1B4_5344	0.38	-0.2
86,444	+		Pf1N1B4_5344	0.48	-0.2
86,444	+		Pf1N1B4_5344	0.48	-1.1
86,444	+		Pf1N1B4_5344	0.48	+0.3
86,445	-		Pf1N1B4_5344	0.48	-0.3
86,445	-		Pf1N1B4_5344	0.48	-2.1
86,557	+		Pf1N1B4_5344	0.64	-0.5
86,557	+		Pf1N1B4_5344	0.64	-1.6
86,557	+		Pf1N1B4_5344	0.64	+0.1
86,558	-		Pf1N1B4_5344	0.64	+0.7
86,571	+		Pf1N1B4_5344	0.65	+0.3
86,572	-				+1.1
86,658	-		Pf1N1B4_5344	0.77	-2.1
86,696	+		Pf1N1B4_5344	0.83	-0.2
86,737	+		Pf1N1B4_5344	0.88	+0.5
86,827	+				-1.2
86,827	+				+0.3
86,909	-		Pf1N1B4_5345	0.35	+0.7
87,088	+				+0.6
87,156	+				-0.1
87,156	+				-0.4
87,156	+				-0.3
87,207	+				+0.3
87,207	+				+0.3
87,207	+				-0.2
87,207	+				-0.2
87,208	-				-0.0
87,208	-				+0.8
87,208	-				-1.7
87,208	-				+0.1
87,208	-				-1.5
87,208	-				-0.9
87,208	-				+3.7
87,401	-		Pf1N1B4_5346	0.34	-1.7
87,401	-		Pf1N1B4_5346	0.34	-0.8
87,401	-		Pf1N1B4_5346	0.34	-2.2
87,401	-		Pf1N1B4_5346	0.34	-0.9
87,401	-		Pf1N1B4_5346	0.34	+0.6
87,401	-				+0.5
87,401	-		Pf1N1B4_5346	0.34	-0.8
87,401	-		Pf1N1B4_5346	0.34	+0.5
87,401	-				+0.1
87,401	-				-0.5
87,597	+		Pf1N1B4_5346	0.62	-1.2
87,835	+				+0.5
87,914	+				-1.7
87,914	+				+0.8
87,914	+				-1.5
87,915	-				-1.2
87,920	+				-0.1
87,986	-				+2.1
88,016	-				-0.9
88,495	-		Pf1N1B4_5348	0.33	-0.2
88,495	-		Pf1N1B4_5348	0.33	-0.5
88,495	-		Pf1N1B4_5348	0.33	-0.5
88,560	-				+1.1
88,560	-		Pf1N1B4_5348	0.86	-0.3
88,642	-				+0.5
88,671	+				+2.9
88,672	-				-0.5
88,793	-				+0.4
88,803	+				-0.0
88,804	-				-0.1
88,859	-				-1.2