Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5253

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
10,357	-				-0.1
10,384	+				-1.0
10,401	-				+1.1
10,401	-				+1.6
10,453	-				+0.7
10,453	-				-0.3
10,496	-				-1.0
10,496	-				+3.7
10,496	-				+0.5
10,496	-				-1.2
10,500	-				-0.2
10,500	-				-0.2
10,500	-				+0.6
10,500	-				-0.1
10,552	-				+0.7
10,733	+		Pf1N1B4_5252	0.27	-1.4
10,780	-		Pf1N1B4_5252	0.33	-0.0
10,803	+		Pf1N1B4_5252	0.36	-0.9
10,803	+		Pf1N1B4_5252	0.36	+3.1
10,819	+		Pf1N1B4_5252	0.38	-0.8
10,821	+		Pf1N1B4_5252	0.39	+1.9
10,821	+		Pf1N1B4_5252	0.39	-0.9
10,821	+		Pf1N1B4_5252	0.39	+0.4
10,822	-		Pf1N1B4_5252	0.39	+1.8
10,822	-		Pf1N1B4_5252	0.39	+0.8
10,822	-		Pf1N1B4_5252	0.39	-1.3
10,841	-		Pf1N1B4_5252	0.41	-0.9
10,929	+		Pf1N1B4_5252	0.53	+1.7
11,130	+		Pf1N1B4_5252	0.81	+1.3
11,131	-		Pf1N1B4_5252	0.81	+0.6
11,131	-		Pf1N1B4_5252	0.81	-2.4
11,131	-		Pf1N1B4_5252	0.81	+0.7
11,134	+		Pf1N1B4_5252	0.81	+0.1
11,134	+		Pf1N1B4_5252	0.81	-0.3
11,159	+		Pf1N1B4_5252	0.84	-0.3
11,205	+				-0.3
11,206	-				+1.1
11,206	-				-1.2
11,206	-				+0.1
11,408	+		Pf1N1B4_5253	0.16	+1.1
11,408	+		Pf1N1B4_5253	0.16	-2.4
11,408	+		Pf1N1B4_5253	0.16	+0.3
11,408	+		Pf1N1B4_5253	0.16	+2.1
11,409	-		Pf1N1B4_5253	0.16	+1.3
11,423	+		Pf1N1B4_5253	0.18	+0.9
11,423	+		Pf1N1B4_5253	0.18	+1.1
11,424	-		Pf1N1B4_5253	0.18	+0.7
11,432	+		Pf1N1B4_5253	0.19	-2.1
11,432	+				-0.9
11,433	-		Pf1N1B4_5253	0.20	+1.8
11,790	-				+0.3
11,790	-		Pf1N1B4_5253	0.66	-0.5
11,864	+		Pf1N1B4_5253	0.76	+1.8
11,920	+		Pf1N1B4_5253	0.83	-0.2
11,920	+		Pf1N1B4_5253	0.83	+2.1
11,920	+		Pf1N1B4_5253	0.83	-1.9
11,920	+		Pf1N1B4_5253	0.83	+1.9
11,921	-		Pf1N1B4_5253	0.84	+0.2
11,921	-		Pf1N1B4_5253	0.84	-0.9
11,924	+		Pf1N1B4_5253	0.84	-0.1
11,924	+		Pf1N1B4_5253	0.84	+1.5
11,924	+		Pf1N1B4_5253	0.84	+0.4
11,925	-		Pf1N1B4_5253	0.84	+0.1
11,925	-		Pf1N1B4_5253	0.84	-1.2
11,969	+				+0.1
11,969	+				-0.2
12,033	+				-0.7
12,033	+				-1.7
12,033	+				-0.5
12,033	+				+1.7
12,034	-				+1.2
12,034	-				+0.1
12,034	-				+0.2
12,068	-				-1.2
12,068	-				+0.3
12,153	+				-0.2
12,418	-		Pf1N1B4_5254	0.11	+0.1
12,485	-		Pf1N1B4_5254	0.19	+0.2
12,485	-		Pf1N1B4_5254	0.19	-2.1
12,485	-		Pf1N1B4_5254	0.19	-1.2
12,546	+		Pf1N1B4_5254	0.26	-0.4
12,547	-				-0.2
12,547	-		Pf1N1B4_5254	0.26	-0.9
12,549	+		Pf1N1B4_5254	0.27	-1.2
12,549	+		Pf1N1B4_5254	0.27	-0.2
12,549	+		Pf1N1B4_5254	0.27	-2.5
12,741	+		Pf1N1B4_5254	0.49	+1.8
12,859	+		Pf1N1B4_5254	0.63	-1.7
12,860	-				+0.1
12,860	-		Pf1N1B4_5254	0.63	+0.4
12,952	+		Pf1N1B4_5254	0.74	-0.5
12,953	-		Pf1N1B4_5254	0.74	-0.4