Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5251

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
8,594	+				-0.2
8,595	-				-0.5
8,595	-				+0.3
8,642	+				+0.1
8,643	-				-1.2
8,654	+				+0.1
8,655	-				-2.5
8,659	-				-0.5
8,659	-				-0.2
8,659	-				-0.5
8,659	-				+1.7
8,659	-				-0.5
8,676	-				-0.9
8,761	+				+0.8
8,761	+				-1.2
8,814	+				+0.7
8,818	+				-0.9
8,819	-				-1.5
8,819	-				+2.3
9,008	-				-0.5
9,074	+				-1.4
9,074	+				+0.1
9,075	-				+0.2
9,406	+				+1.1
9,406	+				+0.7
9,406	+				+0.5
9,406	+				+0.5
9,406	+				-0.1
9,407	-				+0.1
9,407	-				-0.7
9,407	-				+1.1
9,407	-				+0.7
9,410	+				-2.1
9,410	+				-0.2
9,411	-				+1.1
9,411	-				+0.1
9,417	+				+0.5
9,417	+				-0.9
9,418	-				+0.2
9,418	-				-1.1
9,418	-				-1.7
9,418	-				-0.2
9,418	-				+1.4
9,418	-				+0.5
9,418	-				+0.3
9,418	-				-0.6
9,418	-				-1.2
9,418	-				-0.5
9,418	-				-0.2
9,422	-				-0.8
9,422	-				-0.8
9,518	+				+0.3
9,518	+				-0.8
9,519	-				-0.2
9,558	+				-1.5
9,558	+				-0.2
9,596	+				-0.3
9,597	-				+2.1
9,640	-		Pf1N1B4_5251	0.14	-0.5
9,640	-		Pf1N1B4_5251	0.14	+0.6
9,640	-		Pf1N1B4_5251	0.14	+0.3
9,640	-		Pf1N1B4_5251	0.14	+0.8
9,640	-		Pf1N1B4_5251	0.14	-0.9
9,640	-		Pf1N1B4_5251	0.14	-1.6
9,712	+		Pf1N1B4_5251	0.23	-0.8
9,920	+				-0.5
9,920	+		Pf1N1B4_5251	0.47	+0.1
10,136	+		Pf1N1B4_5251	0.73	+0.1
10,136	+		Pf1N1B4_5251	0.73	-0.6
10,136	+		Pf1N1B4_5251	0.73	+0.1
10,136	+		Pf1N1B4_5251	0.73	+0.2
10,136	+		Pf1N1B4_5251	0.73	-1.4
10,136	+		Pf1N1B4_5251	0.73	+0.5
10,136	+		Pf1N1B4_5251	0.73	+1.1
10,136	+		Pf1N1B4_5251	0.73	-0.9
10,137	-		Pf1N1B4_5251	0.73	+0.1
10,137	-		Pf1N1B4_5251	0.73	-1.3
10,137	-				-0.5
10,137	-				+1.1
10,357	-				-0.1
10,384	+				-1.0
10,401	-				+1.1
10,401	-				+1.6
10,453	-				+0.7
10,453	-				-0.3
10,496	-				-1.0
10,496	-				+3.7
10,496	-				+0.5
10,496	-				-1.2
10,500	-				-0.2
10,500	-				-0.2
10,500	-				+0.6
10,500	-				-0.1
10,552	-				+0.7
10,733	+		Pf1N1B4_5252	0.27	-1.4
10,780	-		Pf1N1B4_5252	0.33	-0.0
10,803	+		Pf1N1B4_5252	0.36	-0.9
10,803	+		Pf1N1B4_5252	0.36	+3.1
10,819	+		Pf1N1B4_5252	0.38	-0.8
10,821	+		Pf1N1B4_5252	0.39	+1.9
10,821	+		Pf1N1B4_5252	0.39	-0.9
10,821	+		Pf1N1B4_5252	0.39	+0.4
10,822	-		Pf1N1B4_5252	0.39	+1.8
10,822	-		Pf1N1B4_5252	0.39	+0.8
10,822	-		Pf1N1B4_5252	0.39	-1.3
10,841	-		Pf1N1B4_5252	0.41	-0.9
10,929	+		Pf1N1B4_5252	0.53	+1.7
11,130	+		Pf1N1B4_5252	0.81	+1.3
11,131	-		Pf1N1B4_5252	0.81	+0.6
11,131	-		Pf1N1B4_5252	0.81	-2.4
11,131	-		Pf1N1B4_5252	0.81	+0.7
11,134	+		Pf1N1B4_5252	0.81	+0.1
11,134	+		Pf1N1B4_5252	0.81	-0.3
11,159	+		Pf1N1B4_5252	0.84	-0.3
11,205	+				-0.3
11,206	-				+1.1
11,206	-				-1.2
11,206	-				+0.1