Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5106 and Pf1N1B4_5107 are separated by 231 nucleotides Pf1N1B4_5107 and Pf1N1B4_5238 are separated by 202 nucleotides Pf1N1B4_5238 and Pf1N1B4_5108 are separated by 152 nucleotides
Pf1N1B4_5106 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein, at 5,659,544 to 5,661,058
_5106
Pf1N1B4_5107 - Putative collagenase, at 5,661,290 to 5,663,290
_5107
Pf1N1B4_5238 - tRNA-Gln-TTG, at 5,663,493 to 5,663,564
_5238
Pf1N1B4_5108 - Capsule biosynthesis protein capA, at 5,663,717 to 5,664,829
_5108
Position (kb) 5661
5662
5663
5664 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5660.397 kb on + strand, within Pf1N1B4_5106 at 5660.474 kb on + strand, within Pf1N1B4_5106 at 5660.480 kb on + strand at 5660.481 kb on - strand, within Pf1N1B4_5106 at 5660.481 kb on - strand, within Pf1N1B4_5106 at 5660.594 kb on + strand at 5660.733 kb on - strand at 5660.751 kb on - strand, within Pf1N1B4_5106 at 5660.822 kb on + strand, within Pf1N1B4_5106 at 5660.822 kb on + strand, within Pf1N1B4_5106 at 5660.822 kb on + strand, within Pf1N1B4_5106 at 5660.823 kb on - strand, within Pf1N1B4_5106 at 5660.823 kb on - strand at 5660.823 kb on - strand, within Pf1N1B4_5106 at 5660.823 kb on - strand, within Pf1N1B4_5106 at 5660.835 kb on - strand, within Pf1N1B4_5106 at 5660.909 kb on + strand at 5660.909 kb on + strand at 5660.910 kb on - strand at 5660.910 kb on - strand at 5660.972 kb on + strand at 5660.973 kb on - strand at 5660.973 kb on - strand at 5660.973 kb on - strand at 5661.384 kb on - strand at 5661.820 kb on + strand, within Pf1N1B4_5107 at 5662.719 kb on - strand, within Pf1N1B4_5107 at 5662.940 kb on + strand, within Pf1N1B4_5107 at 5662.941 kb on - strand, within Pf1N1B4_5107 at 5663.467 kb on + strand at 5663.631 kb on + strand at 5663.820 kb on - strand at 5663.828 kb on + strand at 5663.828 kb on + strand at 5663.829 kb on - strand, within Pf1N1B4_5108 at 5663.829 kb on - strand, within Pf1N1B4_5108 at 5663.906 kb on + strand, within Pf1N1B4_5108 at 5663.907 kb on - strand, within Pf1N1B4_5108 at 5664.137 kb on - strand, within Pf1N1B4_5108
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM remove 5,660,397 + Pf1N1B4_5106 0.56 +0.6 5,660,474 + Pf1N1B4_5106 0.61 -1.1 5,660,480 + +0.3 5,660,481 - Pf1N1B4_5106 0.62 +0.0 5,660,481 - Pf1N1B4_5106 0.62 -0.1 5,660,594 + -0.3 5,660,733 - -0.7 5,660,751 - Pf1N1B4_5106 0.80 +0.5 5,660,822 + Pf1N1B4_5106 0.84 -0.4 5,660,822 + Pf1N1B4_5106 0.84 +0.3 5,660,822 + Pf1N1B4_5106 0.84 -0.7 5,660,823 - Pf1N1B4_5106 0.84 +0.3 5,660,823 - -0.7 5,660,823 - Pf1N1B4_5106 0.84 -0.3 5,660,823 - Pf1N1B4_5106 0.84 -1.0 5,660,835 - Pf1N1B4_5106 0.85 -1.3 5,660,909 + -1.3 5,660,909 + -0.1 5,660,910 - -1.7 5,660,910 - -0.3 5,660,972 + +1.5 5,660,973 - +0.3 5,660,973 - -0.7 5,660,973 - -3.0 5,661,384 - -1.0 5,661,820 + Pf1N1B4_5107 0.26 -3.0 5,662,719 - Pf1N1B4_5107 0.71 -0.5 5,662,940 + Pf1N1B4_5107 0.82 +0.1 5,662,941 - Pf1N1B4_5107 0.83 -2.9 5,663,467 + +0.9 5,663,631 + +0.1 5,663,820 - -1.3 5,663,828 + +0.9 5,663,828 + +0.3 5,663,829 - Pf1N1B4_5108 0.10 -1.7 5,663,829 - Pf1N1B4_5108 0.10 +0.3 5,663,906 + Pf1N1B4_5108 0.17 -2.3 5,663,907 - Pf1N1B4_5108 0.17 -0.6 5,664,137 - Pf1N1B4_5108 0.38 -0.3
Or see this region's nucleotide sequence